Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2876

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,446,290	+				+0.8
3,446,291	-				+0.5
3,446,291	-				+1.2
3,446,291	-				+1.7
3,446,316	+				-0.3
3,446,316	+				-0.8
3,446,355	-				+0.2
3,446,365	-				-1.4
3,446,368	-				-0.6
3,446,380	+				-0.2
3,446,381	-				+0.1
3,446,381	-				-0.5
3,446,384	+				-0.1
3,446,385	-				+0.7
3,446,385	-				+0.1
3,446,414	-		Echvi_2875	0.12	+1.7
3,446,414	-		Echvi_2875	0.12	-0.4
3,446,430	-		Echvi_2875	0.14	+0.0
3,446,440	+		Echvi_2875	0.16	-0.3
3,446,441	-		Echvi_2875	0.16	-0.1
3,446,484	-		Echvi_2875	0.22	-0.5
3,446,486	+		Echvi_2875	0.22	+0.8
3,446,487	-		Echvi_2875	0.22	+0.0
3,446,518	+		Echvi_2875	0.26	+1.1
3,446,519	-		Echvi_2875	0.26	+1.2
3,446,524	+		Echvi_2875	0.27	+0.4
3,446,524	+		Echvi_2875	0.27	+0.6
3,446,524	+		Echvi_2875	0.27	+0.5
3,446,525	-		Echvi_2875	0.27	-0.7
3,446,525	-		Echvi_2875	0.27	-0.9
3,446,525	-		Echvi_2875	0.27	+0.1
3,446,525	-		Echvi_2875	0.27	-0.3
3,446,527	-		Echvi_2875	0.27	-0.0
3,446,527	-		Echvi_2875	0.27	+1.2
3,446,565	-		Echvi_2875	0.33	-0.5
3,446,565	-		Echvi_2875	0.33	+0.4
3,446,565	-		Echvi_2875	0.33	+1.7
3,446,577	+		Echvi_2875	0.34	-1.3
3,446,577	+		Echvi_2875	0.34	-0.0
3,446,616	-		Echvi_2875	0.39	+0.5
3,446,626	-		Echvi_2875	0.41	-0.1
3,446,667	+		Echvi_2875	0.46	-2.3
3,446,667	+		Echvi_2875	0.46	+1.7
3,446,712	+		Echvi_2875	0.52	+0.1
3,446,728	-		Echvi_2875	0.54	+0.4
3,446,734	-		Echvi_2875	0.55	-0.9
3,446,750	+		Echvi_2875	0.57	-0.1
3,446,782	-		Echvi_2875	0.62	+1.1
3,446,794	-		Echvi_2875	0.63	-0.7
3,446,839	-		Echvi_2875	0.69	-0.1
3,446,894	-		Echvi_2875	0.77	-0.6
3,446,894	-		Echvi_2875	0.77	-1.6
3,446,907	-		Echvi_2875	0.78	-0.2
3,446,907	-		Echvi_2875	0.78	-0.3
3,446,907	-		Echvi_2875	0.78	-0.2
3,446,907	-		Echvi_2875	0.78	+0.6
3,446,954	-		Echvi_2875	0.85	-0.8
3,446,994	+				-0.4
3,447,037	-				-0.0
3,447,047	-				-0.6
3,447,086	-				+0.3
3,447,086	-				+0.3
3,447,098	+				+0.3
3,447,113	-				-0.0
3,447,149	-				-1.3
3,447,149	-				-0.5
3,447,172	-				+0.3
3,447,173	+				+2.0
3,447,173	+				+0.0
3,447,173	+				+0.2
3,447,173	+				+0.3
3,447,174	-				+0.7
3,447,174	-				-0.2
3,447,174	-				-0.1
3,447,174	-				+1.7
3,447,174	-				+0.9
3,447,174	-				-0.6
3,447,174	-				+0.1
3,447,174	-				+0.1
3,447,174	-				-0.3
3,447,226	+				-1.4
3,447,227	-				-1.0
3,447,232	+				+0.1
3,447,232	+				+0.4
3,447,232	+				-0.1
3,447,233	-				+0.3
3,447,233	-				+0.1
3,447,233	-				+0.0
3,447,239	-				-0.2
3,447,239	-				-0.8
3,447,258	+				-0.6
3,447,271	-				-0.2
3,447,278	+				-0.4
3,447,342	+		Echvi_2876	0.14	+0.6
3,447,366	-		Echvi_2876	0.17	-0.9
3,447,403	+		Echvi_2876	0.21	+0.9
3,447,464	+		Echvi_2876	0.29	-0.1
3,447,465	-		Echvi_2876	0.29	+1.3
3,447,465	-		Echvi_2876	0.29	+0.9
3,447,465	-		Echvi_2876	0.29	+0.2
3,447,491	-		Echvi_2876	0.32	+0.6
3,447,517	+		Echvi_2876	0.36	+0.7
3,447,524	-		Echvi_2876	0.37	+0.5
3,447,525	+		Echvi_2876	0.37	+0.5
3,447,525	+		Echvi_2876	0.37	+0.4
3,447,526	-		Echvi_2876	0.37	+1.4
3,447,540	+		Echvi_2876	0.39	-0.6
3,447,541	-		Echvi_2876	0.39	-0.1
3,447,553	+		Echvi_2876	0.40	-0.7
3,447,565	+		Echvi_2876	0.42	+0.4
3,447,566	-		Echvi_2876	0.42	+0.4
3,447,589	+		Echvi_2876	0.45	+1.1
3,447,590	-		Echvi_2876	0.45	-0.4
3,447,616	+		Echvi_2876	0.48	+0.0
3,447,617	-		Echvi_2876	0.48	-0.3
3,447,694	-		Echvi_2876	0.58	-2.5
3,447,802	+		Echvi_2876	0.72	-0.5
3,447,802	+		Echvi_2876	0.72	-1.6
3,447,803	-		Echvi_2876	0.72	-1.7
3,447,846	+		Echvi_2876	0.77	+1.0
3,447,905	-		Echvi_2876	0.85	-0.7
3,447,905	-		Echvi_2876	0.85	-0.2
3,447,905	-		Echvi_2876	0.85	-0.2
3,447,905	-		Echvi_2876	0.85	+0.6
3,448,014	-				+0.1
3,448,018	+				+0.3
3,448,019	-				+0.1
3,448,019	-				-0.1
3,448,044	-				+0.4
3,448,065	-				+0.0
3,448,088	+				-0.2
3,448,134	-				+0.4
3,448,135	+				-0.0
3,448,198	+				-0.6
3,448,198	+				+0.7
3,448,198	+				-0.7
3,448,199	-				-0.5
3,448,357	-		Echvi_2877	0.13	+0.9
3,448,357	-		Echvi_2877	0.13	-0.1
3,448,375	+		Echvi_2877	0.15	-0.2
3,448,375	+		Echvi_2877	0.15	-0.2
3,448,375	+		Echvi_2877	0.15	+0.3
3,448,375	+		Echvi_2877	0.15	-0.2
3,448,376	-		Echvi_2877	0.15	+0.7
3,448,402	+		Echvi_2877	0.18	+0.4
3,448,412	+		Echvi_2877	0.19	+1.6
3,448,540	+		Echvi_2877	0.33	-0.2
3,448,540	+		Echvi_2877	0.33	-0.9
3,448,541	-		Echvi_2877	0.33	-0.3
3,448,575	+		Echvi_2877	0.36	-0.4
3,448,576	-		Echvi_2877	0.37	+0.3
3,448,576	-		Echvi_2877	0.37	-1.3
3,448,578	+		Echvi_2877	0.37	-0.4
3,448,596	+		Echvi_2877	0.39	+0.7
3,448,596	+		Echvi_2877	0.39	-1.6
3,448,597	-		Echvi_2877	0.39	-1.6
3,448,622	-		Echvi_2877	0.41	+0.7
3,448,622	-		Echvi_2877	0.41	+0.3
3,448,623	+		Echvi_2877	0.42	+0.7
3,448,623	+		Echvi_2877	0.42	+0.0
3,448,624	-		Echvi_2877	0.42	-0.7
3,448,746	+				-0.3
3,448,747	-		Echvi_2877	0.55	-0.5
3,448,747	-		Echvi_2877	0.55	+0.1
3,448,780	-		Echvi_2877	0.58	-1.8
3,448,882	+		Echvi_2877	0.69	-0.7
3,448,882	+		Echvi_2877	0.69	-0.4
3,448,892	-		Echvi_2877	0.70	+1.2
3,448,915	+		Echvi_2877	0.73	-0.5
3,448,916	-		Echvi_2877	0.73	-0.6
3,448,916	-		Echvi_2877	0.73	-0.1
3,448,996	+		Echvi_2877	0.81	-0.5
3,448,996	+		Echvi_2877	0.81	+1.0
3,448,996	+		Echvi_2877	0.81	-0.9
3,448,997	-		Echvi_2877	0.82	+0.1
3,448,997	-		Echvi_2877	0.82	+0.0
3,448,997	-		Echvi_2877	0.82	+0.7
3,448,997	-		Echvi_2877	0.82	-1.1
3,449,005	+		Echvi_2877	0.82	-0.7
3,449,006	-		Echvi_2877	0.82	+0.3