Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0834

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0831 and Echvi_0832 are separated by 10 nucleotidesEchvi_0832 and Echvi_0833 are separated by 25 nucleotidesEchvi_0833 and Echvi_0834 are separated by 42 nucleotidesEchvi_0834 and Echvi_0835 overlap by 4 nucleotides Echvi_0831: Echvi_0831 - hypothetical protein, at 948,240 to 948,746 _0831 Echvi_0832: Echvi_0832 - hypothetical protein, at 948,757 to 949,425 _0832 Echvi_0833: Echvi_0833 - hypothetical protein, at 949,451 to 949,600 _0833 Echvi_0834: Echvi_0834 - hypothetical protein, at 949,643 to 949,960 _0834 Echvi_0835: Echvi_0835 - Uncharacterized iron-regulated membrane protein, at 949,957 to 951,282 _0835 Position (kb) 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 948.710 kb on + strandat 948.711 kb on - strandat 948.746 kb on + strandat 948.771 kb on + strandat 948.771 kb on + strandat 948.775 kb on + strandat 948.776 kb on - strandat 948.784 kb on + strandat 948.785 kb on - strandat 948.785 kb on - strandat 948.800 kb on + strandat 948.807 kb on + strandat 948.808 kb on - strandat 948.819 kb on - strandat 948.951 kb on - strand, within Echvi_0832at 949.032 kb on + strand, within Echvi_0832at 949.032 kb on + strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.076 kb on + strand, within Echvi_0832at 949.077 kb on - strand, within Echvi_0832at 949.087 kb on - strand, within Echvi_0832at 949.108 kb on - strand, within Echvi_0832at 949.145 kb on - strand, within Echvi_0832at 949.192 kb on - strand, within Echvi_0832at 949.247 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.251 kb on - strand, within Echvi_0832at 949.251 kb on - strand, within Echvi_0832at 949.282 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.338 kb on + strand, within Echvi_0832at 949.428 kb on + strandat 949.429 kb on - strandat 949.489 kb on - strand, within Echvi_0833at 949.519 kb on - strand, within Echvi_0833at 949.519 kb on - strand, within Echvi_0833at 949.523 kb on - strand, within Echvi_0833at 949.523 kb on - strand, within Echvi_0833at 949.525 kb on + strand, within Echvi_0833at 949.526 kb on - strand, within Echvi_0833at 949.526 kb on - strand, within Echvi_0833at 949.566 kb on + strand, within Echvi_0833at 949.566 kb on + strand, within Echvi_0833at 949.578 kb on - strand, within Echvi_0833at 949.657 kb on - strandat 949.657 kb on - strandat 949.785 kb on + strand, within Echvi_0834at 949.785 kb on + strand, within Echvi_0834at 949.786 kb on - strand, within Echvi_0834at 949.816 kb on + strand, within Echvi_0834at 949.852 kb on + strand, within Echvi_0834at 949.853 kb on - strand, within Echvi_0834at 949.853 kb on - strand, within Echvi_0834at 949.853 kb on - strand, within Echvi_0834at 949.872 kb on + strand, within Echvi_0834at 949.873 kb on - strand, within Echvi_0834at 949.874 kb on + strand, within Echvi_0834at 949.946 kb on + strandat 949.960 kb on + strandat 950.037 kb on + strandat 950.049 kb on - strandat 950.101 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.175 kb on - strand, within Echvi_0835at 950.175 kb on - strand, within Echvi_0835at 950.175 kb on - strand, within Echvi_0835at 950.270 kb on + strand, within Echvi_0835at 950.276 kb on - strand, within Echvi_0835at 950.276 kb on - strand, within Echvi_0835at 950.276 kb on - strand, within Echvi_0835at 950.327 kb on + strand, within Echvi_0835at 950.327 kb on + strand, within Echvi_0835at 950.327 kb on + strand, within Echvi_0835at 950.328 kb on - strand, within Echvi_0835at 950.330 kb on + strand, within Echvi_0835at 950.330 kb on + strand, within Echvi_0835at 950.331 kb on - strand, within Echvi_0835at 950.331 kb on - strand, within Echvi_0835at 950.331 kb on - strand, within Echvi_0835at 950.361 kb on + strand, within Echvi_0835at 950.362 kb on - strand, within Echvi_0835at 950.366 kb on + strand, within Echvi_0835at 950.366 kb on + strand, within Echvi_0835at 950.383 kb on - strand, within Echvi_0835at 950.402 kb on + strand, within Echvi_0835at 950.403 kb on - strand, within Echvi_0835at 950.427 kb on - strand, within Echvi_0835at 950.463 kb on + strand, within Echvi_0835at 950.463 kb on + strand, within Echvi_0835at 950.464 kb on - strand, within Echvi_0835at 950.670 kb on + strand, within Echvi_0835at 950.804 kb on - strand, within Echvi_0835at 950.865 kb on - strand, within Echvi_0835at 950.877 kb on - strand, within Echvi_0835at 950.892 kb on + strand, within Echvi_0835

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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948,710 + -0.6
948,711 - +0.2
948,746 + +0.7
948,771 + +1.0
948,771 + +0.4
948,775 + +0.6
948,776 - +1.5
948,784 + -1.0
948,785 - -2.0
948,785 - -0.2
948,800 + -2.0
948,807 + -0.6
948,808 - +0.5
948,819 - -0.9
948,951 - Echvi_0832 0.29 -0.4
949,032 + Echvi_0832 0.41 +1.4
949,032 + Echvi_0832 0.41 -1.3
949,033 - Echvi_0832 0.41 +0.7
949,033 - Echvi_0832 0.41 +0.7
949,034 + Echvi_0832 0.41 -0.2
949,034 + Echvi_0832 0.41 -0.5
949,034 + Echvi_0832 0.41 +0.5
949,035 - Echvi_0832 0.42 -0.0
949,035 - Echvi_0832 0.42 +0.1
949,042 - Echvi_0832 0.43 +0.4
949,042 - Echvi_0832 0.43 +0.3
949,042 - Echvi_0832 0.43 +0.8
949,068 - Echvi_0832 0.46 +0.5
949,068 - Echvi_0832 0.46 -0.3
949,076 + Echvi_0832 0.48 -0.3
949,077 - Echvi_0832 0.48 +0.1
949,087 - Echvi_0832 0.49 +0.6
949,108 - Echvi_0832 0.52 -0.5
949,145 - Echvi_0832 0.58 +0.7
949,192 - Echvi_0832 0.65 -3.2
949,247 + Echvi_0832 0.73 +2.6
949,250 + Echvi_0832 0.74 -0.3
949,250 + Echvi_0832 0.74 -0.4
949,250 + Echvi_0832 0.74 +0.8
949,251 - Echvi_0832 0.74 -1.0
949,251 - Echvi_0832 0.74 +0.7
949,282 - Echvi_0832 0.78 -1.2
949,323 - Echvi_0832 0.85 -1.9
949,323 - Echvi_0832 0.85 -0.3
949,323 - Echvi_0832 0.85 +0.5
949,338 + Echvi_0832 0.87 -2.1
949,428 + +0.2
949,429 - -1.4
949,489 - Echvi_0833 0.25 -0.5
949,519 - Echvi_0833 0.45 -0.4
949,519 - Echvi_0833 0.45 +0.3
949,523 - Echvi_0833 0.48 -0.6
949,523 - Echvi_0833 0.48 +0.8
949,525 + Echvi_0833 0.49 +0.8
949,526 - Echvi_0833 0.50 -0.3
949,526 - Echvi_0833 0.50 -0.5
949,566 + Echvi_0833 0.77 -0.3
949,566 + Echvi_0833 0.77 -1.4
949,578 - Echvi_0833 0.85 +0.2
949,657 - -0.9
949,657 - -2.5
949,785 + Echvi_0834 0.45 -0.7
949,785 + Echvi_0834 0.45 -1.3
949,786 - Echvi_0834 0.45 -0.3
949,816 + Echvi_0834 0.54 +0.1
949,852 + Echvi_0834 0.66 +0.1
949,853 - Echvi_0834 0.66 -0.4
949,853 - Echvi_0834 0.66 -1.6
949,853 - Echvi_0834 0.66 -0.8
949,872 + Echvi_0834 0.72 -0.5
949,873 - Echvi_0834 0.72 +0.2
949,874 + Echvi_0834 0.73 -0.5
949,946 + +2.2
949,960 + -0.8
950,037 + -1.3
950,049 - +0.6
950,101 + Echvi_0835 0.11 +0.2
950,174 + Echvi_0835 0.16 +0.6
950,174 + Echvi_0835 0.16 -0.6
950,174 + Echvi_0835 0.16 +0.8
950,174 + Echvi_0835 0.16 -1.2
950,174 + Echvi_0835 0.16 +0.3
950,175 - Echvi_0835 0.16 +0.4
950,175 - Echvi_0835 0.16 -0.7
950,175 - Echvi_0835 0.16 +0.2
950,270 + Echvi_0835 0.24 -1.0
950,276 - Echvi_0835 0.24 -0.2
950,276 - Echvi_0835 0.24 -0.1
950,276 - Echvi_0835 0.24 -0.5
950,327 + Echvi_0835 0.28 -1.2
950,327 + Echvi_0835 0.28 +0.0
950,327 + Echvi_0835 0.28 +0.4
950,328 - Echvi_0835 0.28 +0.9
950,330 + Echvi_0835 0.28 -0.0
950,330 + Echvi_0835 0.28 -0.2
950,331 - Echvi_0835 0.28 +1.3
950,331 - Echvi_0835 0.28 +0.0
950,331 - Echvi_0835 0.28 +1.0
950,361 + Echvi_0835 0.30 +1.0
950,362 - Echvi_0835 0.31 -1.3
950,366 + Echvi_0835 0.31 +1.1
950,366 + Echvi_0835 0.31 +0.2
950,383 - Echvi_0835 0.32 -0.0
950,402 + Echvi_0835 0.34 -1.5
950,403 - Echvi_0835 0.34 -0.6
950,427 - Echvi_0835 0.35 +0.3
950,463 + Echvi_0835 0.38 +1.2
950,463 + Echvi_0835 0.38 +0.0
950,464 - Echvi_0835 0.38 -0.8
950,670 + Echvi_0835 0.54 -1.0
950,804 - Echvi_0835 0.64 -2.1
950,865 - Echvi_0835 0.68 +0.4
950,877 - Echvi_0835 0.69 -0.5
950,892 + Echvi_0835 0.71 -0.1

Or see this region's nucleotide sequence