Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0572

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0570 and Echvi_0571 overlap by 38 nucleotidesEchvi_0571 and Echvi_0572 are separated by 23 nucleotidesEchvi_0572 and Echvi_0573 are separated by 199 nucleotides Echvi_0570: Echvi_0570 - hypothetical protein, at 648,864 to 650,018 _0570 Echvi_0571: Echvi_0571 - hypothetical protein, at 649,981 to 650,226 _0571 Echvi_0572: Echvi_0572 - hypothetical protein, at 650,250 to 651,383 _0572 Echvi_0573: Echvi_0573 - signal recognition particle-docking protein FtsY, at 651,583 to 652,548 _0573 Position (kb) 650 651 652Strain fitness (log2 ratio) -2 -1 0 1 2 3at 649.268 kb on + strand, within Echvi_0570at 649.272 kb on + strand, within Echvi_0570at 649.288 kb on - strand, within Echvi_0570at 649.319 kb on - strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.331 kb on + strand, within Echvi_0570at 649.332 kb on - strand, within Echvi_0570at 649.332 kb on - strand, within Echvi_0570at 649.458 kb on - strand, within Echvi_0570at 649.521 kb on - strand, within Echvi_0570at 649.571 kb on - strand, within Echvi_0570at 649.609 kb on + strand, within Echvi_0570at 649.613 kb on + strand, within Echvi_0570at 649.613 kb on + strand, within Echvi_0570at 649.614 kb on - strand, within Echvi_0570at 649.614 kb on - strand, within Echvi_0570at 649.616 kb on + strand, within Echvi_0570at 649.712 kb on + strand, within Echvi_0570at 649.712 kb on + strand, within Echvi_0570at 649.768 kb on - strand, within Echvi_0570at 649.769 kb on + strand, within Echvi_0570at 649.769 kb on + strand, within Echvi_0570at 649.770 kb on - strand, within Echvi_0570at 649.770 kb on - strand, within Echvi_0570at 649.916 kb on + strandat 649.916 kb on + strandat 649.916 kb on + strandat 649.917 kb on - strandat 649.948 kb on - strandat 650.004 kb on + strandat 650.005 kb on - strandat 650.028 kb on + strand, within Echvi_0571at 650.028 kb on + strand, within Echvi_0571at 650.029 kb on - strand, within Echvi_0571at 650.029 kb on - strand, within Echvi_0571at 650.032 kb on - strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.040 kb on - strand, within Echvi_0571at 650.040 kb on - strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.045 kb on + strand, within Echvi_0571at 650.046 kb on - strand, within Echvi_0571at 650.066 kb on - strand, within Echvi_0571at 650.094 kb on + strand, within Echvi_0571at 650.095 kb on - strand, within Echvi_0571at 650.099 kb on - strand, within Echvi_0571at 650.110 kb on + strand, within Echvi_0571at 650.173 kb on - strand, within Echvi_0571at 650.173 kb on - strand, within Echvi_0571at 650.195 kb on - strand, within Echvi_0571at 650.195 kb on - strand, within Echvi_0571at 650.228 kb on + strandat 650.228 kb on + strandat 650.229 kb on - strandat 650.240 kb on + strandat 650.262 kb on + strandat 650.263 kb on - strandat 650.263 kb on - strandat 650.275 kb on + strandat 650.275 kb on + strandat 650.275 kb on + strandat 650.276 kb on - strandat 650.276 kb on - strandat 650.276 kb on - strandat 650.279 kb on - strandat 650.279 kb on - strandat 650.279 kb on - strandat 650.280 kb on + strandat 650.400 kb on + strand, within Echvi_0572at 650.401 kb on - strand, within Echvi_0572at 650.401 kb on - strand, within Echvi_0572at 650.451 kb on - strand, within Echvi_0572at 650.451 kb on - strand, within Echvi_0572at 650.454 kb on + strand, within Echvi_0572at 650.485 kb on + strand, within Echvi_0572at 650.485 kb on + strand, within Echvi_0572at 650.490 kb on - strand, within Echvi_0572at 650.512 kb on + strand, within Echvi_0572at 650.515 kb on + strand, within Echvi_0572at 650.515 kb on + strand, within Echvi_0572at 650.515 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.521 kb on - strand, within Echvi_0572at 650.521 kb on - strand, within Echvi_0572at 650.521 kb on - strand, within Echvi_0572at 650.553 kb on + strand, within Echvi_0572at 650.554 kb on - strand, within Echvi_0572at 650.554 kb on - strand, within Echvi_0572at 650.578 kb on + strand, within Echvi_0572at 650.578 kb on + strand, within Echvi_0572at 650.579 kb on - strand, within Echvi_0572at 650.579 kb on - strand, within Echvi_0572at 650.579 kb on - strand, within Echvi_0572at 650.586 kb on - strand, within Echvi_0572at 650.671 kb on - strand, within Echvi_0572at 650.671 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.728 kb on + strand, within Echvi_0572at 650.730 kb on + strand, within Echvi_0572at 650.753 kb on + strand, within Echvi_0572at 650.755 kb on + strand, within Echvi_0572at 650.773 kb on + strand, within Echvi_0572at 650.786 kb on + strand, within Echvi_0572at 650.791 kb on + strand, within Echvi_0572at 650.792 kb on - strand, within Echvi_0572at 650.795 kb on + strand, within Echvi_0572at 650.795 kb on + strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.863 kb on + strand, within Echvi_0572at 650.864 kb on - strand, within Echvi_0572at 650.882 kb on + strand, within Echvi_0572at 650.883 kb on - strand, within Echvi_0572at 650.958 kb on - strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.996 kb on + strand, within Echvi_0572at 651.036 kb on - strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.039 kb on - strand, within Echvi_0572at 651.058 kb on + strand, within Echvi_0572at 651.177 kb on - strand, within Echvi_0572at 651.302 kb on + strandat 651.355 kb on - strandat 651.357 kb on - strandat 651.379 kb on - strandat 651.391 kb on - strandat 651.393 kb on + strandat 651.455 kb on + strandat 651.455 kb on + strandat 651.474 kb on + strandat 651.483 kb on + strandat 651.484 kb on - strandat 651.484 kb on - strandat 651.489 kb on + strandat 651.489 kb on + strandat 651.496 kb on - strandat 651.585 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
649,268 + Echvi_0570 0.35 -1.0
649,272 + Echvi_0570 0.35 +0.5
649,288 - Echvi_0570 0.37 +0.6
649,319 - Echvi_0570 0.39 -2.0
649,324 + Echvi_0570 0.40 +0.1
649,324 + Echvi_0570 0.40 -0.6
649,324 + Echvi_0570 0.40 -0.4
649,324 + Echvi_0570 0.40 -0.4
649,324 + Echvi_0570 0.40 -0.7
649,325 - Echvi_0570 0.40 +0.4
649,325 - Echvi_0570 0.40 +1.2
649,325 - Echvi_0570 0.40 -0.6
649,325 - Echvi_0570 0.40 -1.4
649,331 + Echvi_0570 0.40 +0.6
649,332 - Echvi_0570 0.41 +1.0
649,332 - Echvi_0570 0.41 +1.0
649,458 - Echvi_0570 0.51 -0.5
649,521 - Echvi_0570 0.57 +1.4
649,571 - Echvi_0570 0.61 +0.0
649,609 + Echvi_0570 0.65 -0.0
649,613 + Echvi_0570 0.65 +0.1
649,613 + Echvi_0570 0.65 +0.2
649,614 - Echvi_0570 0.65 -0.7
649,614 - Echvi_0570 0.65 +0.6
649,616 + Echvi_0570 0.65 +0.3
649,712 + Echvi_0570 0.73 -0.6
649,712 + Echvi_0570 0.73 +0.7
649,768 - Echvi_0570 0.78 +1.1
649,769 + Echvi_0570 0.78 -0.4
649,769 + Echvi_0570 0.78 +1.1
649,770 - Echvi_0570 0.78 +0.8
649,770 - Echvi_0570 0.78 +0.7
649,916 + -0.2
649,916 + +0.1
649,916 + -0.2
649,917 - -0.1
649,948 - +1.1
650,004 + +0.4
650,005 - -0.3
650,028 + Echvi_0571 0.19 -0.9
650,028 + Echvi_0571 0.19 +0.0
650,029 - Echvi_0571 0.20 -0.4
650,029 - Echvi_0571 0.20 +0.2
650,032 - Echvi_0571 0.21 -1.0
650,039 + Echvi_0571 0.24 +1.5
650,039 + Echvi_0571 0.24 -1.0
650,039 + Echvi_0571 0.24 +1.1
650,039 + Echvi_0571 0.24 +3.5
650,040 - Echvi_0571 0.24 -0.3
650,040 - Echvi_0571 0.24 -1.1
650,043 + Echvi_0571 0.25 -0.4
650,043 + Echvi_0571 0.25 +0.7
650,043 + Echvi_0571 0.25 -1.5
650,043 + Echvi_0571 0.25 -1.2
650,044 - Echvi_0571 0.26 -0.4
650,044 - Echvi_0571 0.26 -0.3
650,044 - Echvi_0571 0.26 +1.0
650,044 - Echvi_0571 0.26 +0.3
650,044 - Echvi_0571 0.26 -0.2
650,045 + Echvi_0571 0.26 -0.3
650,046 - Echvi_0571 0.26 -1.0
650,066 - Echvi_0571 0.35 -0.7
650,094 + Echvi_0571 0.46 -0.9
650,095 - Echvi_0571 0.46 -0.6
650,099 - Echvi_0571 0.48 +0.1
650,110 + Echvi_0571 0.52 -0.2
650,173 - Echvi_0571 0.78 -0.0
650,173 - Echvi_0571 0.78 -0.9
650,195 - Echvi_0571 0.87 -0.0
650,195 - Echvi_0571 0.87 -1.0
650,228 + -0.4
650,228 + +0.2
650,229 - +0.5
650,240 + -0.2
650,262 + +0.5
650,263 - -1.2
650,263 - -1.0
650,275 + +0.7
650,275 + -0.7
650,275 + +0.1
650,276 - +0.7
650,276 - -0.3
650,276 - +0.7
650,279 - -0.2
650,279 - -1.4
650,279 - -0.5
650,280 + +0.1
650,400 + Echvi_0572 0.13 -0.9
650,401 - Echvi_0572 0.13 -0.2
650,401 - Echvi_0572 0.13 +0.7
650,451 - Echvi_0572 0.18 +1.4
650,451 - Echvi_0572 0.18 +0.1
650,454 + Echvi_0572 0.18 +1.4
650,485 + Echvi_0572 0.21 +0.4
650,485 + Echvi_0572 0.21 -0.3
650,490 - Echvi_0572 0.21 +0.0
650,512 + Echvi_0572 0.23 +1.4
650,515 + Echvi_0572 0.23 +1.1
650,515 + Echvi_0572 0.23 -1.0
650,515 + Echvi_0572 0.23 -0.6
650,520 + Echvi_0572 0.24 +0.1
650,520 + Echvi_0572 0.24 +0.8
650,520 + Echvi_0572 0.24 -0.5
650,520 + Echvi_0572 0.24 +1.5
650,520 + Echvi_0572 0.24 -0.3
650,521 - Echvi_0572 0.24 +1.4
650,521 - Echvi_0572 0.24 +0.1
650,521 - Echvi_0572 0.24 +0.0
650,553 + Echvi_0572 0.27 +0.1
650,554 - Echvi_0572 0.27 +1.4
650,554 - Echvi_0572 0.27 -0.9
650,578 + Echvi_0572 0.29 +0.3
650,578 + Echvi_0572 0.29 +0.2
650,579 - Echvi_0572 0.29 -1.2
650,579 - Echvi_0572 0.29 +1.1
650,579 - Echvi_0572 0.29 +0.8
650,586 - Echvi_0572 0.30 +0.2
650,671 - Echvi_0572 0.37 +0.5
650,671 - Echvi_0572 0.37 +0.2
650,727 - Echvi_0572 0.42 -2.5
650,727 - Echvi_0572 0.42 +0.5
650,727 - Echvi_0572 0.42 +0.2
650,728 + Echvi_0572 0.42 -0.0
650,730 + Echvi_0572 0.42 +1.5
650,753 + Echvi_0572 0.44 +1.0
650,755 + Echvi_0572 0.45 +0.4
650,773 + Echvi_0572 0.46 -0.6
650,786 + Echvi_0572 0.47 -0.2
650,791 + Echvi_0572 0.48 +0.4
650,792 - Echvi_0572 0.48 +1.1
650,795 + Echvi_0572 0.48 -0.3
650,795 + Echvi_0572 0.48 +1.5
650,861 - Echvi_0572 0.54 +0.1
650,861 - Echvi_0572 0.54 -0.3
650,861 - Echvi_0572 0.54 -0.3
650,863 + Echvi_0572 0.54 +1.3
650,864 - Echvi_0572 0.54 +0.5
650,882 + Echvi_0572 0.56 +0.7
650,883 - Echvi_0572 0.56 +0.2
650,958 - Echvi_0572 0.62 +0.7
650,994 + Echvi_0572 0.66 -0.2
650,994 + Echvi_0572 0.66 +0.2
650,994 + Echvi_0572 0.66 -0.2
650,994 + Echvi_0572 0.66 -0.3
650,994 + Echvi_0572 0.66 +1.4
650,994 + Echvi_0572 0.66 -0.3
650,995 - Echvi_0572 0.66 -0.5
650,995 - Echvi_0572 0.66 +2.2
650,995 - Echvi_0572 0.66 -0.7
650,995 - Echvi_0572 0.66 +1.3
650,996 + Echvi_0572 0.66 +1.0
651,036 - Echvi_0572 0.69 +0.1
651,038 + Echvi_0572 0.69 +0.1
651,038 + Echvi_0572 0.69 -0.1
651,038 + Echvi_0572 0.69 +0.1
651,039 - Echvi_0572 0.70 +0.0
651,058 + Echvi_0572 0.71 +0.8
651,177 - Echvi_0572 0.82 -1.1
651,302 + -0.5
651,355 - +0.2
651,357 - -0.9
651,379 - +1.4
651,391 - +0.2
651,393 + -1.4
651,455 + -0.0
651,455 + +1.4
651,474 + -0.0
651,483 + +0.0
651,484 - +0.2
651,484 - -1.0
651,489 + +1.0
651,489 + -0.2
651,496 - +0.4
651,585 - +1.0

Or see this region's nucleotide sequence