Strain Fitness in Agrobacterium fabrum C58 around Atu5410

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5409 and Atu5410 are separated by 627 nucleotidesAtu5410 and Atu5411 are separated by 19 nucleotides Atu5409: Atu5409 - ABC transporter substrate binding protein (amino acid), at 403,734 to 404,669 Atu5409 Atu5410: Atu5410 - ABC transporter nucleotide binding/ATPase, at 405,297 to 406,412 Atu5410 Atu5411: Atu5411 - ABC transporter substrate binding protein, at 406,432 to 407,472 Atu5411 Position (kb) 405 406 407Strain fitness (log2 ratio) -2 -1 0 1 2 3at 404.302 kb on + strand, within Atu5409at 404.315 kb on - strand, within Atu5409at 404.317 kb on + strand, within Atu5409at 404.323 kb on - strand, within Atu5409at 404.347 kb on - strand, within Atu5409at 404.372 kb on + strand, within Atu5409at 404.373 kb on + strand, within Atu5409at 404.380 kb on - strand, within Atu5409at 404.382 kb on + strand, within Atu5409at 404.426 kb on - strand, within Atu5409at 404.536 kb on + strand, within Atu5409at 404.583 kb on + strandat 404.601 kb on - strandat 404.769 kb on - strandat 404.769 kb on - strandat 404.890 kb on - strandat 405.179 kb on + strandat 405.181 kb on + strandat 405.189 kb on + strandat 405.256 kb on - strandat 405.264 kb on - strandat 405.268 kb on - strandat 405.270 kb on + strandat 405.425 kb on + strand, within Atu5410at 405.433 kb on - strand, within Atu5410at 405.474 kb on + strand, within Atu5410at 405.496 kb on + strand, within Atu5410at 405.506 kb on + strand, within Atu5410at 405.521 kb on - strand, within Atu5410at 405.539 kb on - strand, within Atu5410at 405.590 kb on - strand, within Atu5410at 405.697 kb on - strand, within Atu5410at 405.697 kb on - strand, within Atu5410at 405.703 kb on + strand, within Atu5410at 405.745 kb on - strand, within Atu5410at 405.753 kb on - strand, within Atu5410at 405.758 kb on - strand, within Atu5410at 405.758 kb on - strand, within Atu5410at 405.776 kb on + strand, within Atu5410at 405.810 kb on + strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.887 kb on + strand, within Atu5410at 405.901 kb on + strand, within Atu5410at 405.917 kb on + strand, within Atu5410at 405.999 kb on + strand, within Atu5410at 406.026 kb on + strand, within Atu5410at 406.039 kb on - strand, within Atu5410at 406.046 kb on - strand, within Atu5410at 406.168 kb on + strand, within Atu5410at 406.186 kb on + strand, within Atu5410at 406.192 kb on - strand, within Atu5410at 406.226 kb on - strand, within Atu5410at 406.243 kb on + strand, within Atu5410at 406.243 kb on + strand, within Atu5410at 406.243 kb on + strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.279 kb on + strand, within Atu5410at 406.302 kb on - strandat 406.339 kb on - strandat 406.344 kb on - strandat 406.363 kb on - strandat 406.378 kb on - strandat 406.398 kb on - strandat 406.416 kb on + strandat 406.416 kb on + strandat 406.421 kb on + strandat 406.429 kb on - strandat 406.532 kb on - strandat 406.535 kb on - strandat 406.572 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.596 kb on + strand, within Atu5411at 406.603 kb on - strand, within Atu5411at 406.603 kb on - strand, within Atu5411at 406.610 kb on + strand, within Atu5411at 406.647 kb on - strand, within Atu5411at 406.659 kb on + strand, within Atu5411at 406.667 kb on - strand, within Atu5411at 406.706 kb on + strand, within Atu5411at 406.759 kb on - strand, within Atu5411at 406.831 kb on + strand, within Atu5411at 406.844 kb on - strand, within Atu5411at 406.871 kb on - strand, within Atu5411at 406.886 kb on - strand, within Atu5411at 406.908 kb on + strand, within Atu5411at 406.915 kb on + strand, within Atu5411at 407.025 kb on + strand, within Atu5411at 407.025 kb on + strand, within Atu5411at 407.033 kb on - strand, within Atu5411at 407.033 kb on - strand, within Atu5411at 407.046 kb on + strand, within Atu5411at 407.054 kb on - strand, within Atu5411at 407.054 kb on - strand, within Atu5411at 407.054 kb on - strand, within Atu5411at 407.078 kb on + strand, within Atu5411at 407.079 kb on + strand, within Atu5411at 407.220 kb on + strand, within Atu5411at 407.256 kb on - strand, within Atu5411at 407.274 kb on + strand, within Atu5411at 407.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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404,302 + Atu5409 0.61 +0.4
404,315 - Atu5409 0.62 -0.0
404,317 + Atu5409 0.62 -0.0
404,323 - Atu5409 0.63 +0.7
404,347 - Atu5409 0.65 +0.2
404,372 + Atu5409 0.68 -0.4
404,373 + Atu5409 0.68 +2.5
404,380 - Atu5409 0.69 +0.1
404,382 + Atu5409 0.69 -0.8
404,426 - Atu5409 0.74 +0.2
404,536 + Atu5409 0.86 -0.2
404,583 + +0.8
404,601 - +0.1
404,769 - +0.1
404,769 - -0.2
404,890 - +1.8
405,179 + +0.1
405,181 + +0.1
405,189 + -0.2
405,256 - -0.2
405,264 - -0.2
405,268 - +1.2
405,270 + +1.0
405,425 + Atu5410 0.11 -0.8
405,433 - Atu5410 0.12 +0.2
405,474 + Atu5410 0.16 +1.8
405,496 + Atu5410 0.18 -0.5
405,506 + Atu5410 0.19 +0.6
405,521 - Atu5410 0.20 +0.5
405,539 - Atu5410 0.22 -0.2
405,590 - Atu5410 0.26 -0.0
405,697 - Atu5410 0.36 +1.2
405,697 - Atu5410 0.36 +0.2
405,703 + Atu5410 0.36 -0.0
405,745 - Atu5410 0.40 +1.3
405,753 - Atu5410 0.41 -0.4
405,758 - Atu5410 0.41 -0.3
405,758 - Atu5410 0.41 -0.4
405,776 + Atu5410 0.43 -0.2
405,810 + Atu5410 0.46 -0.0
405,818 - Atu5410 0.47 +0.1
405,818 - Atu5410 0.47 -0.8
405,818 - Atu5410 0.47 +0.4
405,818 - Atu5410 0.47 -0.2
405,818 - Atu5410 0.47 +2.4
405,887 + Atu5410 0.53 +0.7
405,901 + Atu5410 0.54 -1.2
405,917 + Atu5410 0.56 -0.1
405,999 + Atu5410 0.63 -1.6
406,026 + Atu5410 0.65 +0.5
406,039 - Atu5410 0.66 -0.4
406,046 - Atu5410 0.67 -0.7
406,168 + Atu5410 0.78 +0.2
406,186 + Atu5410 0.80 -0.1
406,192 - Atu5410 0.80 -0.5
406,226 - Atu5410 0.83 -0.7
406,243 + Atu5410 0.85 +2.8
406,243 + Atu5410 0.85 +0.2
406,243 + Atu5410 0.85 -1.4
406,251 - Atu5410 0.85 -0.1
406,251 - Atu5410 0.85 -0.4
406,251 - Atu5410 0.85 +0.2
406,251 - Atu5410 0.85 -0.4
406,279 + Atu5410 0.88 -0.5
406,302 - +0.0
406,339 - -0.2
406,344 - -0.7
406,363 - -1.0
406,378 - +0.9
406,398 - -0.0
406,416 + +0.4
406,416 + +1.4
406,421 + +0.7
406,429 - +0.1
406,532 - +0.2
406,535 - +0.5
406,572 + Atu5411 0.13 -0.1
406,582 + Atu5411 0.14 -1.0
406,582 + Atu5411 0.14 -0.2
406,582 + Atu5411 0.14 +0.1
406,582 + Atu5411 0.14 -2.1
406,582 + Atu5411 0.14 +1.1
406,582 + Atu5411 0.14 +0.1
406,590 - Atu5411 0.15 -0.6
406,590 - Atu5411 0.15 +1.5
406,590 - Atu5411 0.15 +0.2
406,590 - Atu5411 0.15 +0.6
406,590 - Atu5411 0.15 -0.4
406,596 + Atu5411 0.16 -0.3
406,603 - Atu5411 0.16 +0.6
406,603 - Atu5411 0.16 +0.9
406,610 + Atu5411 0.17 +1.6
406,647 - Atu5411 0.21 +0.2
406,659 + Atu5411 0.22 +0.1
406,667 - Atu5411 0.23 -1.2
406,706 + Atu5411 0.26 -0.4
406,759 - Atu5411 0.31 -0.3
406,831 + Atu5411 0.38 +0.5
406,844 - Atu5411 0.40 -0.2
406,871 - Atu5411 0.42 -0.5
406,886 - Atu5411 0.44 +1.2
406,908 + Atu5411 0.46 +0.5
406,915 + Atu5411 0.46 +0.3
407,025 + Atu5411 0.57 -0.8
407,025 + Atu5411 0.57 +0.8
407,033 - Atu5411 0.58 +0.9
407,033 - Atu5411 0.58 +0.5
407,046 + Atu5411 0.59 -1.7
407,054 - Atu5411 0.60 +1.2
407,054 - Atu5411 0.60 -0.2
407,054 - Atu5411 0.60 +0.1
407,078 + Atu5411 0.62 -0.5
407,079 + Atu5411 0.62 +0.5
407,220 + Atu5411 0.76 +0.8
407,256 - Atu5411 0.79 +0.4
407,274 + Atu5411 0.81 +0.1
407,380 + +0.8

Or see this region's nucleotide sequence