Strain Fitness in Agrobacterium fabrum C58 around Atu5193

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5191 and Atu5192 are separated by 369 nucleotidesAtu5192 and Atu5193 are separated by 219 nucleotidesAtu5193 and Atu5194 are separated by 12 nucleotidesAtu5194 and Atu5195 are separated by 166 nucleotides Atu5191: Atu5191 - hypothetical protein, at 186,410 to 187,534 Atu5191 Atu5192: Atu5192 - hypothetical protein, at 187,904 to 188,209 Atu5192 Atu5193: Atu5193 - peptidase, at 188,429 to 190,330 Atu5193 Atu5194: Atu5194 - MerR family transcriptional regulator, at 190,343 to 191,092 Atu5194 Atu5195: Atu5195 - LysR family transcriptional regulator, at 191,259 to 192,176 Atu5195 Position (kb) 188 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 187.479 kb on - strandat 187.602 kb on - strandat 187.632 kb on + strandat 187.679 kb on - strandat 187.756 kb on + strandat 187.819 kb on - strandat 187.831 kb on + strandat 187.839 kb on - strandat 187.886 kb on - strandat 187.904 kb on - strandat 187.923 kb on + strandat 187.931 kb on - strandat 187.964 kb on + strand, within Atu5192at 187.992 kb on - strand, within Atu5192at 187.999 kb on + strand, within Atu5192at 187.999 kb on - strand, within Atu5192at 188.004 kb on - strand, within Atu5192at 188.007 kb on - strand, within Atu5192at 188.040 kb on - strand, within Atu5192at 188.110 kb on + strand, within Atu5192at 188.116 kb on - strand, within Atu5192at 188.134 kb on + strand, within Atu5192at 188.134 kb on + strand, within Atu5192at 188.141 kb on - strand, within Atu5192at 188.142 kb on - strand, within Atu5192at 188.142 kb on - strand, within Atu5192at 188.174 kb on - strand, within Atu5192at 188.218 kb on + strandat 188.273 kb on - strandat 188.428 kb on - strandat 188.431 kb on + strandat 188.436 kb on + strandat 188.669 kb on + strand, within Atu5193at 188.700 kb on + strand, within Atu5193at 188.710 kb on + strand, within Atu5193at 188.716 kb on + strand, within Atu5193at 188.737 kb on + strand, within Atu5193at 188.737 kb on + strand, within Atu5193at 188.737 kb on + strand, within Atu5193at 188.737 kb on + strand, within Atu5193at 188.737 kb on + strand, within Atu5193at 188.737 kb on + strand, within Atu5193at 188.745 kb on - strand, within Atu5193at 188.745 kb on - strand, within Atu5193at 188.745 kb on - strand, within Atu5193at 188.745 kb on - strand, within Atu5193at 188.745 kb on - strand, within Atu5193at 188.783 kb on + strand, within Atu5193at 188.791 kb on - strand, within Atu5193at 188.797 kb on - strand, within Atu5193at 188.833 kb on + strand, within Atu5193at 188.941 kb on + strand, within Atu5193at 188.951 kb on + strand, within Atu5193at 188.981 kb on - strand, within Atu5193at 189.072 kb on + strand, within Atu5193at 189.091 kb on - strand, within Atu5193at 189.149 kb on - strand, within Atu5193at 189.163 kb on + strand, within Atu5193at 189.163 kb on + strand, within Atu5193at 189.163 kb on + strand, within Atu5193at 189.171 kb on - strand, within Atu5193at 189.171 kb on - strand, within Atu5193at 189.173 kb on + strand, within Atu5193at 189.219 kb on - strand, within Atu5193at 189.255 kb on - strand, within Atu5193at 189.335 kb on + strand, within Atu5193at 189.335 kb on + strand, within Atu5193at 189.335 kb on + strand, within Atu5193at 189.436 kb on + strand, within Atu5193at 189.469 kb on - strand, within Atu5193at 189.469 kb on - strand, within Atu5193at 189.610 kb on + strand, within Atu5193at 189.705 kb on - strand, within Atu5193at 189.714 kb on + strand, within Atu5193at 189.764 kb on + strand, within Atu5193at 189.783 kb on - strand, within Atu5193at 189.815 kb on - strand, within Atu5193at 189.847 kb on + strand, within Atu5193at 189.847 kb on + strand, within Atu5193at 189.855 kb on - strand, within Atu5193at 189.855 kb on - strand, within Atu5193at 189.875 kb on + strand, within Atu5193at 189.952 kb on + strand, within Atu5193at 189.952 kb on + strand, within Atu5193at 189.960 kb on - strand, within Atu5193at 190.001 kb on - strand, within Atu5193at 190.010 kb on - strand, within Atu5193at 190.021 kb on + strand, within Atu5193at 190.029 kb on - strand, within Atu5193at 190.194 kb on + strandat 190.244 kb on + strandat 190.292 kb on + strandat 190.320 kb on - strandat 190.367 kb on - strandat 190.389 kb on - strandat 190.399 kb on - strandat 190.436 kb on - strand, within Atu5194at 190.436 kb on - strand, within Atu5194at 190.453 kb on + strand, within Atu5194at 190.453 kb on + strand, within Atu5194at 190.483 kb on + strand, within Atu5194at 190.637 kb on + strand, within Atu5194at 190.643 kb on + strand, within Atu5194at 190.643 kb on - strand, within Atu5194at 190.646 kb on - strand, within Atu5194at 190.664 kb on - strand, within Atu5194at 190.666 kb on + strand, within Atu5194at 190.711 kb on - strand, within Atu5194at 190.747 kb on + strand, within Atu5194at 190.763 kb on - strand, within Atu5194at 190.791 kb on + strand, within Atu5194at 190.791 kb on + strand, within Atu5194at 190.796 kb on + strand, within Atu5194at 190.799 kb on - strand, within Atu5194at 190.807 kb on + strand, within Atu5194at 190.807 kb on + strand, within Atu5194at 190.839 kb on + strand, within Atu5194at 190.847 kb on - strand, within Atu5194at 190.955 kb on + strand, within Atu5194at 191.005 kb on + strand, within Atu5194at 191.005 kb on + strand, within Atu5194at 191.005 kb on + strand, within Atu5194at 191.008 kb on - strand, within Atu5194at 191.013 kb on - strand, within Atu5194at 191.064 kb on - strandat 191.139 kb on + strandat 191.141 kb on + strandat 191.141 kb on + strandat 191.149 kb on - strandat 191.149 kb on - strandat 191.149 kb on - strandat 191.171 kb on + strandat 191.181 kb on + strandat 191.181 kb on + strandat 191.181 kb on + strandat 191.181 kb on + strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.189 kb on - strandat 191.274 kb on + strandat 191.282 kb on - strandat 191.288 kb on + strandat 191.296 kb on - strandat 191.306 kb on - strandat 191.316 kb on - strandat 191.330 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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187,479 - -0.0
187,602 - +0.2
187,632 + +1.2
187,679 - -0.3
187,756 + +1.1
187,819 - +0.3
187,831 + +0.6
187,839 - +0.3
187,886 - +0.1
187,904 - -0.0
187,923 + -0.2
187,931 - +0.1
187,964 + Atu5192 0.20 -1.3
187,992 - Atu5192 0.29 -0.5
187,999 + Atu5192 0.31 +0.6
187,999 - Atu5192 0.31 +0.0
188,004 - Atu5192 0.33 +0.0
188,007 - Atu5192 0.34 +0.6
188,040 - Atu5192 0.44 +0.6
188,110 + Atu5192 0.67 +0.2
188,116 - Atu5192 0.69 -0.1
188,134 + Atu5192 0.75 +0.5
188,134 + Atu5192 0.75 +1.8
188,141 - Atu5192 0.77 +1.0
188,142 - Atu5192 0.78 -0.0
188,142 - Atu5192 0.78 +2.0
188,174 - Atu5192 0.88 -0.5
188,218 + +0.3
188,273 - -0.3
188,428 - +0.4
188,431 + +0.5
188,436 + +0.1
188,669 + Atu5193 0.13 +1.0
188,700 + Atu5193 0.14 -0.9
188,710 + Atu5193 0.15 -0.1
188,716 + Atu5193 0.15 +0.1
188,737 + Atu5193 0.16 -0.3
188,737 + Atu5193 0.16 -1.0
188,737 + Atu5193 0.16 +2.8
188,737 + Atu5193 0.16 -0.0
188,737 + Atu5193 0.16 -0.5
188,737 + Atu5193 0.16 -0.1
188,745 - Atu5193 0.17 -0.1
188,745 - Atu5193 0.17 -1.8
188,745 - Atu5193 0.17 -0.0
188,745 - Atu5193 0.17 -0.1
188,745 - Atu5193 0.17 -1.6
188,783 + Atu5193 0.19 +0.2
188,791 - Atu5193 0.19 -0.1
188,797 - Atu5193 0.19 +2.3
188,833 + Atu5193 0.21 -0.2
188,941 + Atu5193 0.27 -0.3
188,951 + Atu5193 0.27 -0.5
188,981 - Atu5193 0.29 -0.4
189,072 + Atu5193 0.34 -1.1
189,091 - Atu5193 0.35 -0.5
189,149 - Atu5193 0.38 -0.7
189,163 + Atu5193 0.39 +1.0
189,163 + Atu5193 0.39 -0.3
189,163 + Atu5193 0.39 +0.5
189,171 - Atu5193 0.39 +0.3
189,171 - Atu5193 0.39 +1.3
189,173 + Atu5193 0.39 +0.8
189,219 - Atu5193 0.42 +1.1
189,255 - Atu5193 0.43 +0.1
189,335 + Atu5193 0.48 -1.0
189,335 + Atu5193 0.48 -0.2
189,335 + Atu5193 0.48 +0.9
189,436 + Atu5193 0.53 -0.5
189,469 - Atu5193 0.55 -0.7
189,469 - Atu5193 0.55 -0.9
189,610 + Atu5193 0.62 +1.0
189,705 - Atu5193 0.67 +0.1
189,714 + Atu5193 0.68 +0.2
189,764 + Atu5193 0.70 +0.3
189,783 - Atu5193 0.71 -0.2
189,815 - Atu5193 0.73 -2.5
189,847 + Atu5193 0.75 +0.4
189,847 + Atu5193 0.75 +0.4
189,855 - Atu5193 0.75 +1.2
189,855 - Atu5193 0.75 +0.8
189,875 + Atu5193 0.76 +0.1
189,952 + Atu5193 0.80 -0.1
189,952 + Atu5193 0.80 +0.5
189,960 - Atu5193 0.80 +0.2
190,001 - Atu5193 0.83 -0.1
190,010 - Atu5193 0.83 +0.5
190,021 + Atu5193 0.84 -1.1
190,029 - Atu5193 0.84 -2.0
190,194 + +0.0
190,244 + -0.4
190,292 + +0.2
190,320 - +0.7
190,367 - +1.1
190,389 - -1.0
190,399 - -0.5
190,436 - Atu5194 0.12 -0.4
190,436 - Atu5194 0.12 -0.2
190,453 + Atu5194 0.15 -0.4
190,453 + Atu5194 0.15 +0.9
190,483 + Atu5194 0.19 -0.2
190,637 + Atu5194 0.39 +1.2
190,643 + Atu5194 0.40 +0.8
190,643 - Atu5194 0.40 +0.3
190,646 - Atu5194 0.40 +0.2
190,664 - Atu5194 0.43 +0.5
190,666 + Atu5194 0.43 -0.2
190,711 - Atu5194 0.49 -0.2
190,747 + Atu5194 0.54 +1.6
190,763 - Atu5194 0.56 +0.6
190,791 + Atu5194 0.60 -0.4
190,791 + Atu5194 0.60 +0.3
190,796 + Atu5194 0.60 +0.8
190,799 - Atu5194 0.61 -0.9
190,807 + Atu5194 0.62 -0.4
190,807 + Atu5194 0.62 -0.3
190,839 + Atu5194 0.66 -1.5
190,847 - Atu5194 0.67 -0.0
190,955 + Atu5194 0.82 +0.1
191,005 + Atu5194 0.88 +2.4
191,005 + Atu5194 0.88 +0.5
191,005 + Atu5194 0.88 -0.0
191,008 - Atu5194 0.89 -0.4
191,013 - Atu5194 0.89 +0.2
191,064 - +0.8
191,139 + -0.7
191,141 + +0.8
191,141 + +0.5
191,149 - +0.2
191,149 - +0.2
191,149 - +0.7
191,171 + +0.7
191,181 + +0.1
191,181 + +0.2
191,181 + -0.2
191,181 + -0.4
191,189 - +0.6
191,189 - +0.2
191,189 - -0.5
191,189 - -0.0
191,189 - -0.1
191,189 - -0.2
191,189 - -0.7
191,189 - -0.3
191,189 - -1.3
191,274 + -0.0
191,282 - -0.1
191,288 + +0.1
191,296 - -0.6
191,306 - +0.8
191,316 - +1.8
191,330 + +0.3

Or see this region's nucleotide sequence