Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0347 and Atu0348 overlap by 1 nucleotides Atu0348 and Atu0349 are separated by 103 nucleotides Atu0349 and Atu8118 are separated by 114 nucleotides Atu8118 and Atu0351 are separated by 142 nucleotides
Atu0347: Atu0347 - virulence factor MviN, at 342,473 to 344,062
Atu0347
Atu0348: Atu0348 - hypothetical protein, at 344,062 to 344,466
Atu0348
Atu0349: Atu0349 - tryptophan-tRNA ligase, at 344,570 to 345,634
Atu0349
Atu8118: Atu8118 - putative universal stress protein, at 345,749 to 346,240
Atu8118
Atu0351: Atu0351 - hypothetical protein, at 346,383 to 346,946
Atu0351
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 344.005 kb on + strand at 344.056 kb on + strand at 344.094 kb on + strand at 344.146 kb on + strand, within Atu0348 at 344.241 kb on - strand, within Atu0348 at 344.319 kb on - strand, within Atu0348 at 344.394 kb on + strand, within Atu0348 at 344.402 kb on - strand, within Atu0348 at 344.402 kb on - strand, within Atu0348 at 344.402 kb on - strand, within Atu0348 at 344.455 kb on - strand at 344.470 kb on - strand at 344.534 kb on + strand at 345.631 kb on + strand at 345.641 kb on - strand at 345.665 kb on + strand at 345.884 kb on - strand, within Atu8118 at 345.886 kb on + strand, within Atu8118 at 345.886 kb on + strand, within Atu8118 at 345.894 kb on - strand, within Atu8118 at 345.979 kb on + strand, within Atu8118 at 345.979 kb on + strand, within Atu8118 at 345.987 kb on - strand, within Atu8118 at 345.990 kb on + strand, within Atu8118 at 345.998 kb on - strand, within Atu8118
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 344,005 + -0.6 344,056 + +0.6 344,094 + -0.1 344,146 + Atu0348 0.21 +0.1 344,241 - Atu0348 0.44 -0.7 344,319 - Atu0348 0.63 -1.1 344,394 + Atu0348 0.82 +1.6 344,402 - Atu0348 0.84 +0.0 344,402 - Atu0348 0.84 -0.4 344,402 - Atu0348 0.84 +0.2 344,455 - +0.2 344,470 - +0.4 344,534 + -2.8 345,631 + +0.1 345,641 - -1.3 345,665 + +0.8 345,884 - Atu8118 0.27 +0.1 345,886 + Atu8118 0.28 -1.0 345,886 + Atu8118 0.28 -0.1 345,894 - Atu8118 0.29 +2.3 345,979 + Atu8118 0.47 -1.0 345,979 + Atu8118 0.47 -0.3 345,987 - Atu8118 0.48 -0.0 345,990 + Atu8118 0.49 -0.3 345,998 - Atu8118 0.51 +0.0
Or see this region's nucleotide sequence