Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4588

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4586 and Echvi_4587 overlap by 14 nucleotidesEchvi_4587 and Echvi_4588 overlap by 4 nucleotidesEchvi_4588 and Echvi_4589 are separated by 9 nucleotides Echvi_4586: Echvi_4586 - von Willebrand factor type A domain., at 5,493,801 to 5,494,808 _4586 Echvi_4587: Echvi_4587 - hypothetical protein, at 5,494,795 to 5,495,298 _4587 Echvi_4588: Echvi_4588 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 5,495,295 to 5,496,233 _4588 Echvi_4589: Echvi_4589 - MoxR-like ATPases, at 5,496,243 to 5,497,169 _4589 Position (kb) 5495 5496 5497Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5494.348 kb on + strand, within Echvi_4586at 5494.484 kb on + strand, within Echvi_4586at 5494.746 kb on + strandat 5494.797 kb on - strandat 5494.830 kb on + strandat 5494.967 kb on + strand, within Echvi_4587at 5494.967 kb on + strand, within Echvi_4587at 5494.968 kb on - strand, within Echvi_4587at 5494.968 kb on - strand, within Echvi_4587at 5494.968 kb on - strand, within Echvi_4587at 5494.995 kb on - strand, within Echvi_4587at 5495.018 kb on - strand, within Echvi_4587at 5495.094 kb on - strand, within Echvi_4587at 5495.312 kb on + strandat 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.466 kb on - strand, within Echvi_4588at 5495.466 kb on - strand, within Echvi_4588at 5495.534 kb on - strand, within Echvi_4588at 5495.558 kb on + strand, within Echvi_4588at 5495.581 kb on + strand, within Echvi_4588at 5495.603 kb on - strand, within Echvi_4588at 5495.645 kb on + strand, within Echvi_4588at 5495.652 kb on - strand, within Echvi_4588at 5495.934 kb on + strand, within Echvi_4588at 5495.982 kb on - strand, within Echvi_4588at 5496.046 kb on + strand, within Echvi_4588at 5496.047 kb on - strand, within Echvi_4588at 5496.116 kb on + strand, within Echvi_4588at 5496.164 kb on - strandat 5496.164 kb on - strandat 5496.195 kb on - strandat 5496.212 kb on - strandat 5496.234 kb on - strandat 5496.244 kb on + strandat 5496.245 kb on - strandat 5496.250 kb on - strandat 5496.252 kb on + strandat 5496.258 kb on + strandat 5496.259 kb on - strandat 5496.263 kb on + strandat 5496.264 kb on - strandat 5496.319 kb on + strandat 5496.319 kb on + strandat 5496.319 kb on + strandat 5496.319 kb on + strandat 5496.320 kb on - strandat 5496.320 kb on - strandat 5496.435 kb on + strand, within Echvi_4589at 5496.490 kb on + strand, within Echvi_4589at 5496.519 kb on - strand, within Echvi_4589at 5496.525 kb on + strand, within Echvi_4589at 5496.526 kb on - strand, within Echvi_4589at 5496.531 kb on - strand, within Echvi_4589at 5496.532 kb on + strand, within Echvi_4589at 5496.742 kb on + strand, within Echvi_4589at 5496.917 kb on + strand, within Echvi_4589at 5497.124 kb on + strandat 5497.143 kb on - strandat 5497.154 kb on + strandat 5497.178 kb on + strandat 5497.210 kb on + strandat 5497.210 kb on + strandat 5497.210 kb on + strandat 5497.211 kb on - strandat 5497.211 kb on - strandat 5497.232 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
remove
5,494,348 + Echvi_4586 0.54 -0.1
5,494,484 + Echvi_4586 0.68 -0.4
5,494,746 + +0.3
5,494,797 - +3.5
5,494,830 + -0.8
5,494,967 + Echvi_4587 0.34 -1.7
5,494,967 + Echvi_4587 0.34 -0.1
5,494,968 - Echvi_4587 0.34 +0.9
5,494,968 - Echvi_4587 0.34 +0.0
5,494,968 - Echvi_4587 0.34 +0.1
5,494,995 - Echvi_4587 0.40 -1.7
5,495,018 - Echvi_4587 0.44 +0.1
5,495,094 - Echvi_4587 0.59 +0.9
5,495,312 + +1.5
5,495,463 + Echvi_4588 0.18 -0.1
5,495,463 + Echvi_4588 0.18 -0.6
5,495,463 + Echvi_4588 0.18 +0.4
5,495,463 + Echvi_4588 0.18 -0.7
5,495,463 + Echvi_4588 0.18 -0.9
5,495,463 + Echvi_4588 0.18 -0.1
5,495,464 - Echvi_4588 0.18 -0.7
5,495,464 - Echvi_4588 0.18 -0.7
5,495,464 - Echvi_4588 0.18 +1.9
5,495,464 - Echvi_4588 0.18 -1.2
5,495,466 - Echvi_4588 0.18 -0.3
5,495,466 - Echvi_4588 0.18 -0.6
5,495,534 - Echvi_4588 0.25 -0.5
5,495,558 + Echvi_4588 0.28 +0.9
5,495,581 + Echvi_4588 0.30 +0.2
5,495,603 - Echvi_4588 0.33 -1.4
5,495,645 + Echvi_4588 0.37 +0.1
5,495,652 - Echvi_4588 0.38 +0.2
5,495,934 + Echvi_4588 0.68 -0.7
5,495,982 - Echvi_4588 0.73 -0.8
5,496,046 + Echvi_4588 0.80 +0.9
5,496,047 - Echvi_4588 0.80 +0.7
5,496,116 + Echvi_4588 0.87 -0.6
5,496,164 - -0.3
5,496,164 - -1.3
5,496,195 - -0.3
5,496,212 - +1.2
5,496,234 - -2.0
5,496,244 + -0.9
5,496,245 - -1.4
5,496,250 - -1.0
5,496,252 + +0.9
5,496,258 + +0.4
5,496,259 - +0.6
5,496,263 + -0.4
5,496,264 - +2.7
5,496,319 + +0.5
5,496,319 + -0.1
5,496,319 + -1.3
5,496,319 + -0.0
5,496,320 - +0.0
5,496,320 - +0.2
5,496,435 + Echvi_4589 0.21 -1.0
5,496,490 + Echvi_4589 0.27 +0.6
5,496,519 - Echvi_4589 0.30 +0.3
5,496,525 + Echvi_4589 0.30 -0.6
5,496,526 - Echvi_4589 0.31 -0.4
5,496,531 - Echvi_4589 0.31 -0.6
5,496,532 + Echvi_4589 0.31 -0.3
5,496,742 + Echvi_4589 0.54 +0.2
5,496,917 + Echvi_4589 0.73 +2.7
5,497,124 + -0.9
5,497,143 - -0.2
5,497,154 + -0.1
5,497,178 + +0.5
5,497,210 + -2.5
5,497,210 + +0.3
5,497,210 + -0.5
5,497,211 - -0.9
5,497,211 - -0.6
5,497,232 - +0.9

Or see this region's nucleotide sequence