Experiment: m.b. Dimethyl Sulfoxide 12 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2046 and Echvi_2047 are separated by 93 nucleotides Echvi_2047 and Echvi_2048 overlap by 10 nucleotides
Echvi_2046: Echvi_2046 - 16S rRNA (guanine(527)-N(7))-methyltransferase GidB, at 2,415,633 to 2,416,277
_2046
Echvi_2047: Echvi_2047 - RNA polymerase sigma factor, sigma-70 family, at 2,416,371 to 2,416,982
_2047
Echvi_2048: Echvi_2048 - Glycosyltransferases, probably involved in cell wall biogenesis, at 2,416,973 to 2,418,103
_2048
Position (kb)
2416
2417 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2415.419 kb on + strand at 2415.493 kb on - strand at 2415.516 kb on + strand at 2415.527 kb on + strand at 2415.579 kb on - strand at 2415.615 kb on - strand at 2415.632 kb on - strand at 2415.658 kb on + strand at 2415.659 kb on - strand at 2415.659 kb on - strand at 2415.659 kb on - strand at 2415.712 kb on + strand, within Echvi_2046 at 2415.712 kb on + strand, within Echvi_2046 at 2415.713 kb on - strand, within Echvi_2046 at 2415.713 kb on - strand, within Echvi_2046 at 2415.773 kb on - strand, within Echvi_2046 at 2415.812 kb on + strand, within Echvi_2046 at 2415.812 kb on + strand, within Echvi_2046 at 2415.826 kb on - strand, within Echvi_2046 at 2415.836 kb on - strand, within Echvi_2046 at 2415.872 kb on + strand, within Echvi_2046 at 2415.880 kb on + strand, within Echvi_2046 at 2415.884 kb on + strand, within Echvi_2046 at 2415.884 kb on + strand, within Echvi_2046 at 2415.990 kb on + strand, within Echvi_2046 at 2415.990 kb on + strand, within Echvi_2046 at 2416.029 kb on + strand, within Echvi_2046 at 2416.029 kb on + strand, within Echvi_2046 at 2416.192 kb on - strand, within Echvi_2046 at 2416.192 kb on - strand, within Echvi_2046 at 2416.235 kb on + strand at 2416.278 kb on - strand at 2416.279 kb on + strand at 2416.279 kb on + strand at 2416.279 kb on + strand at 2416.279 kb on + strand at 2416.297 kb on + strand at 2416.300 kb on + strand at 2416.301 kb on - strand at 2416.301 kb on - strand at 2416.310 kb on - strand at 2416.376 kb on + strand at 2416.378 kb on + strand at 2416.405 kb on + strand at 2416.483 kb on + strand, within Echvi_2047 at 2416.484 kb on - strand, within Echvi_2047 at 2416.484 kb on - strand, within Echvi_2047 at 2416.520 kb on + strand, within Echvi_2047 at 2416.521 kb on - strand, within Echvi_2047 at 2416.709 kb on + strand, within Echvi_2047 at 2416.743 kb on - strand, within Echvi_2047 at 2416.748 kb on + strand, within Echvi_2047 at 2416.750 kb on + strand, within Echvi_2047 at 2416.750 kb on + strand, within Echvi_2047 at 2416.751 kb on - strand, within Echvi_2047 at 2416.806 kb on - strand, within Echvi_2047 at 2416.869 kb on - strand, within Echvi_2047 at 2416.870 kb on + strand, within Echvi_2047 at 2416.871 kb on - strand, within Echvi_2047 at 2416.871 kb on - strand, within Echvi_2047 at 2416.891 kb on + strand, within Echvi_2047 at 2416.915 kb on - strand, within Echvi_2047 at 2416.926 kb on + strand at 2416.929 kb on + strand at 2416.929 kb on + strand at 2416.930 kb on - strand at 2416.930 kb on - strand at 2416.985 kb on - strand at 2416.985 kb on - strand at 2416.985 kb on - strand at 2417.033 kb on + strand at 2417.033 kb on + strand at 2417.037 kb on + strand at 2417.037 kb on + strand at 2417.042 kb on + strand at 2417.042 kb on + strand at 2417.042 kb on + strand at 2417.135 kb on + strand, within Echvi_2048 at 2417.138 kb on + strand, within Echvi_2048 at 2417.138 kb on + strand, within Echvi_2048 at 2417.138 kb on + strand, within Echvi_2048 at 2417.140 kb on + strand, within Echvi_2048 at 2417.140 kb on + strand, within Echvi_2048 at 2417.180 kb on - strand, within Echvi_2048 at 2417.195 kb on + strand, within Echvi_2048 at 2417.195 kb on + strand, within Echvi_2048 at 2417.251 kb on + strand, within Echvi_2048 at 2417.263 kb on + strand, within Echvi_2048 at 2417.304 kb on + strand, within Echvi_2048 at 2417.304 kb on + strand, within Echvi_2048 at 2417.304 kb on + strand, within Echvi_2048 at 2417.304 kb on + strand, within Echvi_2048 at 2417.304 kb on + strand, within Echvi_2048 at 2417.305 kb on - strand, within Echvi_2048 at 2417.307 kb on + strand, within Echvi_2048 at 2417.357 kb on + strand, within Echvi_2048 at 2417.357 kb on + strand, within Echvi_2048 at 2417.400 kb on + strand, within Echvi_2048 at 2417.400 kb on + strand, within Echvi_2048 at 2417.400 kb on + strand, within Echvi_2048 at 2417.402 kb on + strand, within Echvi_2048 at 2417.402 kb on + strand, within Echvi_2048 at 2417.402 kb on + strand, within Echvi_2048 at 2417.402 kb on + strand, within Echvi_2048 at 2417.402 kb on + strand, within Echvi_2048 at 2417.403 kb on - strand, within Echvi_2048 at 2417.425 kb on + strand, within Echvi_2048 at 2417.480 kb on + strand, within Echvi_2048 at 2417.539 kb on + strand, within Echvi_2048 at 2417.577 kb on - strand, within Echvi_2048 at 2417.715 kb on + strand, within Echvi_2048 at 2417.715 kb on + strand, within Echvi_2048 at 2417.716 kb on - strand, within Echvi_2048 at 2417.716 kb on - strand, within Echvi_2048 at 2417.716 kb on - strand, within Echvi_2048 at 2417.728 kb on + strand, within Echvi_2048 at 2417.728 kb on + strand, within Echvi_2048 at 2417.740 kb on + strand, within Echvi_2048 at 2417.740 kb on + strand, within Echvi_2048 at 2417.748 kb on + strand, within Echvi_2048 at 2417.749 kb on - strand, within Echvi_2048 at 2417.749 kb on - strand, within Echvi_2048 at 2417.779 kb on - strand, within Echvi_2048 at 2417.779 kb on - strand, within Echvi_2048 at 2417.779 kb on - strand, within Echvi_2048 at 2417.850 kb on + strand, within Echvi_2048 at 2417.873 kb on + strand, within Echvi_2048 at 2417.874 kb on - strand, within Echvi_2048 at 2417.874 kb on - strand, within Echvi_2048 at 2417.942 kb on - strand, within Echvi_2048 at 2417.942 kb on - strand, within Echvi_2048
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol% remove 2,415,419 + +2.3 2,415,493 - -1.1 2,415,516 + -1.0 2,415,527 + +0.5 2,415,579 - -1.0 2,415,615 - -0.3 2,415,632 - +0.9 2,415,658 + +2.3 2,415,659 - -0.7 2,415,659 - -2.1 2,415,659 - +0.9 2,415,712 + Echvi_2046 0.12 +0.3 2,415,712 + Echvi_2046 0.12 +1.1 2,415,713 - Echvi_2046 0.12 +1.3 2,415,713 - Echvi_2046 0.12 +4.5 2,415,773 - Echvi_2046 0.22 -0.1 2,415,812 + Echvi_2046 0.28 -1.2 2,415,812 + Echvi_2046 0.28 +0.9 2,415,826 - Echvi_2046 0.30 -2.1 2,415,836 - Echvi_2046 0.31 +1.9 2,415,872 + Echvi_2046 0.37 -0.7 2,415,880 + Echvi_2046 0.38 +0.3 2,415,884 + Echvi_2046 0.39 -0.4 2,415,884 + Echvi_2046 0.39 +2.4 2,415,990 + Echvi_2046 0.55 +0.9 2,415,990 + Echvi_2046 0.55 -0.1 2,416,029 + Echvi_2046 0.61 +0.1 2,416,029 + Echvi_2046 0.61 +0.2 2,416,192 - Echvi_2046 0.87 +1.2 2,416,192 - Echvi_2046 0.87 +0.7 2,416,235 + +1.4 2,416,278 - +0.9 2,416,279 + -0.9 2,416,279 + +0.4 2,416,279 + -2.4 2,416,279 + +0.2 2,416,297 + +2.1 2,416,300 + +0.2 2,416,301 - +0.1 2,416,301 - -0.8 2,416,310 - +1.6 2,416,376 + +0.0 2,416,378 + +0.4 2,416,405 + -0.7 2,416,483 + Echvi_2047 0.18 +0.5 2,416,484 - Echvi_2047 0.18 -0.2 2,416,484 - Echvi_2047 0.18 +0.2 2,416,520 + Echvi_2047 0.24 -0.4 2,416,521 - Echvi_2047 0.25 +0.3 2,416,709 + Echvi_2047 0.55 +0.8 2,416,743 - Echvi_2047 0.61 -0.8 2,416,748 + Echvi_2047 0.62 +1.9 2,416,750 + Echvi_2047 0.62 +1.0 2,416,750 + Echvi_2047 0.62 -0.7 2,416,751 - Echvi_2047 0.62 +0.3 2,416,806 - Echvi_2047 0.71 -0.1 2,416,869 - Echvi_2047 0.81 -1.2 2,416,870 + Echvi_2047 0.82 +0.3 2,416,871 - Echvi_2047 0.82 +1.7 2,416,871 - Echvi_2047 0.82 -0.2 2,416,891 + Echvi_2047 0.85 +0.1 2,416,915 - Echvi_2047 0.89 -1.1 2,416,926 + -0.1 2,416,929 + -0.1 2,416,929 + -0.4 2,416,930 - -0.9 2,416,930 - -1.6 2,416,985 - -0.8 2,416,985 - +2.4 2,416,985 - -0.5 2,417,033 + +0.2 2,417,033 + +1.6 2,417,037 + +1.6 2,417,037 + +1.5 2,417,042 + +1.2 2,417,042 + +0.0 2,417,042 + -0.2 2,417,135 + Echvi_2048 0.14 +0.7 2,417,138 + Echvi_2048 0.15 -0.7 2,417,138 + Echvi_2048 0.15 +0.3 2,417,138 + Echvi_2048 0.15 +0.1 2,417,140 + Echvi_2048 0.15 +0.1 2,417,140 + Echvi_2048 0.15 +1.1 2,417,180 - Echvi_2048 0.18 -1.3 2,417,195 + Echvi_2048 0.20 +1.3 2,417,195 + Echvi_2048 0.20 -0.8 2,417,251 + Echvi_2048 0.25 +0.6 2,417,263 + Echvi_2048 0.26 -1.1 2,417,304 + Echvi_2048 0.29 +0.6 2,417,304 + Echvi_2048 0.29 +0.5 2,417,304 + Echvi_2048 0.29 -1.0 2,417,304 + Echvi_2048 0.29 -0.8 2,417,304 + Echvi_2048 0.29 -0.8 2,417,305 - Echvi_2048 0.29 -1.0 2,417,307 + Echvi_2048 0.30 -0.2 2,417,357 + Echvi_2048 0.34 +1.9 2,417,357 + Echvi_2048 0.34 +0.4 2,417,400 + Echvi_2048 0.38 +0.2 2,417,400 + Echvi_2048 0.38 +0.4 2,417,400 + Echvi_2048 0.38 +0.3 2,417,402 + Echvi_2048 0.38 -0.9 2,417,402 + Echvi_2048 0.38 -1.4 2,417,402 + Echvi_2048 0.38 -0.1 2,417,402 + Echvi_2048 0.38 -1.8 2,417,402 + Echvi_2048 0.38 -0.1 2,417,403 - Echvi_2048 0.38 +1.2 2,417,425 + Echvi_2048 0.40 -1.2 2,417,480 + Echvi_2048 0.45 -0.6 2,417,539 + Echvi_2048 0.50 -0.2 2,417,577 - Echvi_2048 0.53 +0.0 2,417,715 + Echvi_2048 0.66 +0.7 2,417,715 + Echvi_2048 0.66 -0.7 2,417,716 - Echvi_2048 0.66 +0.6 2,417,716 - Echvi_2048 0.66 -0.2 2,417,716 - Echvi_2048 0.66 -1.4 2,417,728 + Echvi_2048 0.67 -1.6 2,417,728 + Echvi_2048 0.67 +0.8 2,417,740 + Echvi_2048 0.68 +0.4 2,417,740 + Echvi_2048 0.68 +2.2 2,417,748 + Echvi_2048 0.69 -0.6 2,417,749 - Echvi_2048 0.69 +0.3 2,417,749 - Echvi_2048 0.69 -0.1 2,417,779 - Echvi_2048 0.71 -0.9 2,417,779 - Echvi_2048 0.71 +0.3 2,417,779 - Echvi_2048 0.71 -0.3 2,417,850 + Echvi_2048 0.78 +0.8 2,417,873 + Echvi_2048 0.80 +1.6 2,417,874 - Echvi_2048 0.80 +0.5 2,417,874 - Echvi_2048 0.80 +0.4 2,417,942 - Echvi_2048 0.86 -0.4 2,417,942 - Echvi_2048 0.86 -0.5
Or see this region's nucleotide sequence