Experiment: m.b. Dimethyl Sulfoxide 12 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1204 and Echvi_1205 are separated by 45 nucleotides Echvi_1205 and Echvi_1206 overlap by 1 nucleotides Echvi_1206 and Echvi_1207 are separated by 180 nucleotides
Echvi_1204: Echvi_1204 - Transcriptional regulator, at 1,382,316 to 1,383,209
_1204
Echvi_1205: Echvi_1205 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,383,255 to 1,384,211
_1205
Echvi_1206: Echvi_1206 - TIGR00730 family protein, at 1,384,211 to 1,384,942
_1206
Echvi_1207: Echvi_1207 - Predicted Fe-S-cluster oxidoreductase, at 1,385,123 to 1,385,836
_1207
Position (kb)
1383
1384
1385 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1382.258 kb on - strand at 1382.394 kb on + strand at 1382.471 kb on + strand, within Echvi_1204 at 1382.512 kb on + strand, within Echvi_1204 at 1382.650 kb on - strand, within Echvi_1204 at 1382.729 kb on + strand, within Echvi_1204 at 1382.825 kb on + strand, within Echvi_1204 at 1382.828 kb on + strand, within Echvi_1204 at 1382.828 kb on + strand, within Echvi_1204 at 1382.828 kb on + strand, within Echvi_1204 at 1382.886 kb on - strand, within Echvi_1204 at 1382.886 kb on - strand, within Echvi_1204 at 1382.899 kb on + strand, within Echvi_1204 at 1382.987 kb on - strand, within Echvi_1204 at 1383.045 kb on + strand, within Echvi_1204 at 1383.045 kb on + strand, within Echvi_1204 at 1383.082 kb on + strand, within Echvi_1204 at 1383.104 kb on + strand, within Echvi_1204 at 1383.104 kb on + strand, within Echvi_1204 at 1383.104 kb on + strand, within Echvi_1204 at 1383.134 kb on - strand at 1383.179 kb on + strand at 1383.198 kb on - strand at 1383.276 kb on - strand at 1383.280 kb on + strand at 1383.280 kb on + strand at 1383.281 kb on - strand at 1383.331 kb on + strand at 1383.340 kb on - strand at 1383.347 kb on + strand at 1383.347 kb on + strand at 1383.348 kb on - strand at 1383.348 kb on - strand at 1383.349 kb on + strand at 1383.349 kb on + strand at 1383.391 kb on - strand, within Echvi_1205 at 1383.428 kb on + strand, within Echvi_1205 at 1383.428 kb on + strand, within Echvi_1205 at 1383.429 kb on - strand, within Echvi_1205 at 1383.433 kb on + strand, within Echvi_1205 at 1383.433 kb on + strand, within Echvi_1205 at 1383.434 kb on - strand, within Echvi_1205 at 1383.436 kb on + strand, within Echvi_1205 at 1383.436 kb on + strand, within Echvi_1205 at 1383.436 kb on + strand, within Echvi_1205 at 1383.437 kb on - strand, within Echvi_1205 at 1383.491 kb on + strand, within Echvi_1205 at 1383.512 kb on + strand, within Echvi_1205 at 1383.513 kb on - strand, within Echvi_1205 at 1383.513 kb on - strand, within Echvi_1205 at 1383.513 kb on - strand, within Echvi_1205 at 1383.513 kb on - strand, within Echvi_1205 at 1383.514 kb on + strand, within Echvi_1205 at 1383.514 kb on + strand, within Echvi_1205 at 1383.515 kb on - strand, within Echvi_1205 at 1383.534 kb on + strand, within Echvi_1205 at 1383.547 kb on + strand, within Echvi_1205 at 1383.547 kb on + strand, within Echvi_1205 at 1383.551 kb on - strand, within Echvi_1205 at 1383.585 kb on + strand, within Echvi_1205 at 1383.585 kb on + strand, within Echvi_1205 at 1383.661 kb on + strand, within Echvi_1205 at 1383.661 kb on + strand, within Echvi_1205 at 1383.662 kb on - strand, within Echvi_1205 at 1383.756 kb on - strand, within Echvi_1205 at 1383.826 kb on + strand, within Echvi_1205 at 1383.826 kb on + strand, within Echvi_1205 at 1383.830 kb on + strand, within Echvi_1205 at 1383.830 kb on + strand, within Echvi_1205 at 1383.850 kb on + strand, within Echvi_1205 at 1383.851 kb on - strand, within Echvi_1205 at 1383.880 kb on - strand, within Echvi_1205 at 1383.883 kb on + strand, within Echvi_1205 at 1383.940 kb on + strand, within Echvi_1205 at 1383.940 kb on + strand, within Echvi_1205 at 1383.941 kb on - strand, within Echvi_1205 at 1383.941 kb on - strand, within Echvi_1205 at 1383.941 kb on - strand, within Echvi_1205 at 1383.941 kb on - strand, within Echvi_1205 at 1383.941 kb on - strand, within Echvi_1205 at 1383.943 kb on - strand, within Echvi_1205 at 1383.943 kb on - strand, within Echvi_1205 at 1383.943 kb on - strand, within Echvi_1205 at 1383.943 kb on - strand, within Echvi_1205 at 1383.943 kb on - strand, within Echvi_1205 at 1383.943 kb on - strand, within Echvi_1205 at 1384.067 kb on + strand, within Echvi_1205 at 1384.084 kb on + strand, within Echvi_1205 at 1384.084 kb on + strand, within Echvi_1205 at 1384.084 kb on + strand, within Echvi_1205 at 1384.152 kb on + strand at 1384.152 kb on + strand at 1384.153 kb on - strand at 1384.164 kb on + strand at 1384.180 kb on + strand at 1384.181 kb on - strand at 1384.188 kb on - strand at 1384.189 kb on + strand at 1384.189 kb on + strand at 1384.189 kb on + strand at 1384.189 kb on + strand at 1384.189 kb on + strand at 1384.189 kb on + strand at 1384.189 kb on + strand at 1384.189 kb on + strand at 1384.190 kb on - strand at 1384.190 kb on - strand at 1384.190 kb on - strand at 1384.190 kb on - strand at 1384.190 kb on - strand at 1384.190 kb on - strand at 1384.190 kb on - strand at 1384.199 kb on + strand at 1384.200 kb on - strand at 1384.233 kb on + strand at 1384.234 kb on - strand at 1384.242 kb on + strand at 1384.242 kb on + strand at 1384.243 kb on - strand at 1384.243 kb on - strand at 1384.318 kb on + strand, within Echvi_1206 at 1384.319 kb on - strand, within Echvi_1206 at 1384.319 kb on - strand, within Echvi_1206 at 1384.319 kb on - strand, within Echvi_1206 at 1384.382 kb on - strand, within Echvi_1206 at 1384.424 kb on + strand, within Echvi_1206 at 1384.511 kb on + strand, within Echvi_1206 at 1384.512 kb on - strand, within Echvi_1206 at 1384.563 kb on + strand, within Echvi_1206 at 1384.563 kb on + strand, within Echvi_1206 at 1384.563 kb on + strand, within Echvi_1206 at 1384.564 kb on - strand, within Echvi_1206 at 1384.564 kb on - strand, within Echvi_1206 at 1384.687 kb on - strand, within Echvi_1206 at 1384.729 kb on + strand, within Echvi_1206 at 1384.734 kb on + strand, within Echvi_1206 at 1384.735 kb on - strand, within Echvi_1206 at 1384.735 kb on - strand, within Echvi_1206 at 1384.788 kb on - strand, within Echvi_1206 at 1384.913 kb on + strand at 1385.009 kb on + strand at 1385.155 kb on - strand at 1385.197 kb on - strand, within Echvi_1207 at 1385.197 kb on - strand, within Echvi_1207 at 1385.200 kb on + strand, within Echvi_1207
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol% remove 1,382,258 - -0.0 1,382,394 + +0.5 1,382,471 + Echvi_1204 0.17 +2.4 1,382,512 + Echvi_1204 0.22 -0.0 1,382,650 - Echvi_1204 0.37 -0.5 1,382,729 + Echvi_1204 0.46 +1.0 1,382,825 + Echvi_1204 0.57 +1.0 1,382,828 + Echvi_1204 0.57 -1.3 1,382,828 + Echvi_1204 0.57 +1.0 1,382,828 + Echvi_1204 0.57 -0.4 1,382,886 - Echvi_1204 0.64 +0.1 1,382,886 - Echvi_1204 0.64 +0.2 1,382,899 + Echvi_1204 0.65 +0.2 1,382,987 - Echvi_1204 0.75 -0.8 1,383,045 + Echvi_1204 0.82 +0.7 1,383,045 + Echvi_1204 0.82 -1.2 1,383,082 + Echvi_1204 0.86 -0.7 1,383,104 + Echvi_1204 0.88 -0.8 1,383,104 + Echvi_1204 0.88 +0.7 1,383,104 + Echvi_1204 0.88 +0.4 1,383,134 - -1.0 1,383,179 + +0.3 1,383,198 - +1.1 1,383,276 - +0.5 1,383,280 + +0.4 1,383,280 + -0.7 1,383,281 - +2.0 1,383,331 + +0.4 1,383,340 - -0.5 1,383,347 + +0.2 1,383,347 + +0.3 1,383,348 - -0.7 1,383,348 - +0.5 1,383,349 + +0.1 1,383,349 + +1.0 1,383,391 - Echvi_1205 0.14 -0.2 1,383,428 + Echvi_1205 0.18 -0.6 1,383,428 + Echvi_1205 0.18 +0.2 1,383,429 - Echvi_1205 0.18 -0.3 1,383,433 + Echvi_1205 0.19 +0.2 1,383,433 + Echvi_1205 0.19 -0.3 1,383,434 - Echvi_1205 0.19 +0.4 1,383,436 + Echvi_1205 0.19 +1.6 1,383,436 + Echvi_1205 0.19 +0.1 1,383,436 + Echvi_1205 0.19 -0.3 1,383,437 - Echvi_1205 0.19 -1.6 1,383,491 + Echvi_1205 0.25 +0.9 1,383,512 + Echvi_1205 0.27 -0.6 1,383,513 - Echvi_1205 0.27 -0.0 1,383,513 - Echvi_1205 0.27 -2.5 1,383,513 - Echvi_1205 0.27 +0.1 1,383,513 - Echvi_1205 0.27 -0.9 1,383,514 + Echvi_1205 0.27 +1.7 1,383,514 + Echvi_1205 0.27 -0.0 1,383,515 - Echvi_1205 0.27 +0.9 1,383,534 + Echvi_1205 0.29 +0.3 1,383,547 + Echvi_1205 0.31 +3.6 1,383,547 + Echvi_1205 0.31 -0.8 1,383,551 - Echvi_1205 0.31 -1.1 1,383,585 + Echvi_1205 0.34 +1.3 1,383,585 + Echvi_1205 0.34 +0.8 1,383,661 + Echvi_1205 0.42 -0.7 1,383,661 + Echvi_1205 0.42 +0.0 1,383,662 - Echvi_1205 0.43 -0.2 1,383,756 - Echvi_1205 0.52 -0.1 1,383,826 + Echvi_1205 0.60 +1.4 1,383,826 + Echvi_1205 0.60 +0.3 1,383,830 + Echvi_1205 0.60 -0.2 1,383,830 + Echvi_1205 0.60 +3.6 1,383,850 + Echvi_1205 0.62 +0.5 1,383,851 - Echvi_1205 0.62 +1.0 1,383,880 - Echvi_1205 0.65 -1.4 1,383,883 + Echvi_1205 0.66 +1.0 1,383,940 + Echvi_1205 0.72 +1.1 1,383,940 + Echvi_1205 0.72 -0.4 1,383,941 - Echvi_1205 0.72 +1.0 1,383,941 - Echvi_1205 0.72 +0.0 1,383,941 - Echvi_1205 0.72 -1.4 1,383,941 - Echvi_1205 0.72 -0.0 1,383,941 - Echvi_1205 0.72 +0.7 1,383,943 - Echvi_1205 0.72 +0.1 1,383,943 - Echvi_1205 0.72 +0.7 1,383,943 - Echvi_1205 0.72 +0.7 1,383,943 - Echvi_1205 0.72 -0.6 1,383,943 - Echvi_1205 0.72 -1.0 1,383,943 - Echvi_1205 0.72 +0.2 1,384,067 + Echvi_1205 0.85 +0.1 1,384,084 + Echvi_1205 0.87 -1.8 1,384,084 + Echvi_1205 0.87 -0.8 1,384,084 + Echvi_1205 0.87 +0.3 1,384,152 + +1.0 1,384,152 + +0.9 1,384,153 - -0.6 1,384,164 + -1.3 1,384,180 + +2.0 1,384,181 - -1.2 1,384,188 - +0.9 1,384,189 + +0.3 1,384,189 + +0.5 1,384,189 + +1.1 1,384,189 + -0.5 1,384,189 + +0.5 1,384,189 + +0.6 1,384,189 + -0.7 1,384,189 + -0.0 1,384,190 - -0.5 1,384,190 - +1.1 1,384,190 - -2.5 1,384,190 - +0.7 1,384,190 - -0.0 1,384,190 - -0.6 1,384,190 - +0.4 1,384,199 + +0.1 1,384,200 - -0.7 1,384,233 + +0.8 1,384,234 - +0.1 1,384,242 + -0.6 1,384,242 + +1.7 1,384,243 - -0.3 1,384,243 - -0.2 1,384,318 + Echvi_1206 0.15 +1.0 1,384,319 - Echvi_1206 0.15 -1.7 1,384,319 - Echvi_1206 0.15 -0.8 1,384,319 - Echvi_1206 0.15 +0.7 1,384,382 - Echvi_1206 0.23 +0.5 1,384,424 + Echvi_1206 0.29 -0.6 1,384,511 + Echvi_1206 0.41 -3.0 1,384,512 - Echvi_1206 0.41 -0.6 1,384,563 + Echvi_1206 0.48 -1.7 1,384,563 + Echvi_1206 0.48 +1.2 1,384,563 + Echvi_1206 0.48 -2.3 1,384,564 - Echvi_1206 0.48 -2.6 1,384,564 - Echvi_1206 0.48 -1.3 1,384,687 - Echvi_1206 0.65 +0.4 1,384,729 + Echvi_1206 0.71 +0.1 1,384,734 + Echvi_1206 0.71 -1.7 1,384,735 - Echvi_1206 0.72 -0.6 1,384,735 - Echvi_1206 0.72 -2.3 1,384,788 - Echvi_1206 0.79 -0.9 1,384,913 + -1.6 1,385,009 + +0.3 1,385,155 - -0.4 1,385,197 - Echvi_1207 0.10 -1.0 1,385,197 - Echvi_1207 0.10 +0.5 1,385,200 + Echvi_1207 0.11 -0.2
Or see this region's nucleotide sequence