Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0356

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0355 and Echvi_0356 are separated by 102 nucleotidesEchvi_0356 and Echvi_0357 are separated by 53 nucleotidesEchvi_0357 and Echvi_0358 are separated by 387 nucleotides Echvi_0355: Echvi_0355 - Putative stress-responsive transcriptional regulator, at 381,662 to 383,569 _0355 Echvi_0356: Echvi_0356 - Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain, at 383,672 to 385,072 _0356 Echvi_0357: Echvi_0357 - hypothetical protein, at 385,126 to 385,608 _0357 Echvi_0358: Echvi_0358 - RNA polymerase sigma factor, sigma-70 family, at 385,996 to 386,565 _0358 Position (kb) 383 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 382.752 kb on + strand, within Echvi_0355at 382.761 kb on - strand, within Echvi_0355at 382.795 kb on + strand, within Echvi_0355at 382.795 kb on + strand, within Echvi_0355at 382.796 kb on - strand, within Echvi_0355at 382.796 kb on - strand, within Echvi_0355at 382.796 kb on - strand, within Echvi_0355at 382.796 kb on - strand, within Echvi_0355at 382.869 kb on + strand, within Echvi_0355at 382.870 kb on - strand, within Echvi_0355at 382.966 kb on + strand, within Echvi_0355at 383.134 kb on - strand, within Echvi_0355at 383.244 kb on - strand, within Echvi_0355at 383.351 kb on + strand, within Echvi_0355at 383.446 kb on + strandat 383.450 kb on + strandat 383.450 kb on + strandat 383.451 kb on - strandat 383.451 kb on - strandat 383.451 kb on - strandat 383.451 kb on - strandat 383.543 kb on - strandat 383.649 kb on + strandat 383.663 kb on + strandat 383.755 kb on - strandat 383.882 kb on + strand, within Echvi_0356at 384.002 kb on + strand, within Echvi_0356at 384.051 kb on - strand, within Echvi_0356at 384.076 kb on - strand, within Echvi_0356at 384.146 kb on + strand, within Echvi_0356at 384.146 kb on + strand, within Echvi_0356at 384.146 kb on + strand, within Echvi_0356at 384.146 kb on + strand, within Echvi_0356at 384.147 kb on - strand, within Echvi_0356at 384.147 kb on - strand, within Echvi_0356at 384.147 kb on - strand, within Echvi_0356at 384.148 kb on + strand, within Echvi_0356at 384.148 kb on + strand, within Echvi_0356at 384.148 kb on + strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.161 kb on - strand, within Echvi_0356at 384.247 kb on + strand, within Echvi_0356at 384.380 kb on + strand, within Echvi_0356at 384.444 kb on - strand, within Echvi_0356at 384.444 kb on - strand, within Echvi_0356at 384.444 kb on - strand, within Echvi_0356at 384.446 kb on + strand, within Echvi_0356at 384.447 kb on - strand, within Echvi_0356at 384.447 kb on - strand, within Echvi_0356at 384.495 kb on - strand, within Echvi_0356at 384.495 kb on - strand, within Echvi_0356at 384.620 kb on + strand, within Echvi_0356at 384.620 kb on + strand, within Echvi_0356at 384.674 kb on - strand, within Echvi_0356at 384.725 kb on + strand, within Echvi_0356at 384.725 kb on + strand, within Echvi_0356at 384.726 kb on - strand, within Echvi_0356at 384.727 kb on + strand, within Echvi_0356at 384.802 kb on - strand, within Echvi_0356at 384.831 kb on - strand, within Echvi_0356at 384.838 kb on - strand, within Echvi_0356at 384.866 kb on + strand, within Echvi_0356at 384.867 kb on - strand, within Echvi_0356at 384.868 kb on + strand, within Echvi_0356at 384.868 kb on + strand, within Echvi_0356at 384.869 kb on - strandat 384.925 kb on + strand, within Echvi_0356at 384.925 kb on + strand, within Echvi_0356at 384.945 kb on + strandat 385.021 kb on + strandat 385.021 kb on + strandat 385.190 kb on + strand, within Echvi_0357at 385.191 kb on - strand, within Echvi_0357at 385.356 kb on + strand, within Echvi_0357at 385.357 kb on - strand, within Echvi_0357at 385.516 kb on + strand, within Echvi_0357at 385.516 kb on + strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.531 kb on + strand, within Echvi_0357at 385.533 kb on + strand, within Echvi_0357at 385.533 kb on + strand, within Echvi_0357at 385.592 kb on - strandat 385.603 kb on + strandat 385.614 kb on + strandat 385.627 kb on - strandat 385.657 kb on + strandat 385.660 kb on + strandat 385.660 kb on + strandat 385.660 kb on + strandat 385.661 kb on - strandat 385.661 kb on - strandat 385.688 kb on - strandat 385.691 kb on - strandat 385.724 kb on + strandat 385.768 kb on - strandat 385.831 kb on + strandat 385.832 kb on - strandat 385.900 kb on + strandat 385.900 kb on + strandat 385.900 kb on + strandat 385.901 kb on - strandat 385.901 kb on - strandat 385.904 kb on + strandat 385.904 kb on + strandat 385.904 kb on + strandat 385.905 kb on - strandat 385.909 kb on + strandat 385.910 kb on - strandat 386.036 kb on + strandat 386.036 kb on + strandat 386.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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382,752 + Echvi_0355 0.57 -1.1
382,761 - Echvi_0355 0.58 +0.3
382,795 + Echvi_0355 0.59 +0.9
382,795 + Echvi_0355 0.59 -0.5
382,796 - Echvi_0355 0.59 -0.8
382,796 - Echvi_0355 0.59 -0.1
382,796 - Echvi_0355 0.59 -0.1
382,796 - Echvi_0355 0.59 +0.4
382,869 + Echvi_0355 0.63 -1.0
382,870 - Echvi_0355 0.63 +0.8
382,966 + Echvi_0355 0.68 +0.3
383,134 - Echvi_0355 0.77 -1.0
383,244 - Echvi_0355 0.83 -0.5
383,351 + Echvi_0355 0.89 -0.8
383,446 + +0.6
383,450 + -0.0
383,450 + +0.4
383,451 - +0.9
383,451 - +0.2
383,451 - +1.9
383,451 - +0.9
383,543 - -0.9
383,649 + -0.9
383,663 + -1.3
383,755 - +1.2
383,882 + Echvi_0356 0.15 -0.5
384,002 + Echvi_0356 0.24 +0.1
384,051 - Echvi_0356 0.27 -2.8
384,076 - Echvi_0356 0.29 -1.2
384,146 + Echvi_0356 0.34 +0.3
384,146 + Echvi_0356 0.34 +0.1
384,146 + Echvi_0356 0.34 -1.9
384,146 + Echvi_0356 0.34 -1.2
384,147 - Echvi_0356 0.34 -0.7
384,147 - Echvi_0356 0.34 -1.1
384,147 - Echvi_0356 0.34 +1.5
384,148 + Echvi_0356 0.34 -0.8
384,148 + Echvi_0356 0.34 -0.4
384,148 + Echvi_0356 0.34 -0.2
384,149 - Echvi_0356 0.34 -0.7
384,149 - Echvi_0356 0.34 -0.1
384,149 - Echvi_0356 0.34 -2.5
384,149 - Echvi_0356 0.34 -0.7
384,149 - Echvi_0356 0.34 +1.9
384,161 - Echvi_0356 0.35 -1.4
384,247 + Echvi_0356 0.41 +0.3
384,380 + Echvi_0356 0.51 +0.1
384,444 - Echvi_0356 0.55 -1.4
384,444 - Echvi_0356 0.55 +1.0
384,444 - Echvi_0356 0.55 -1.4
384,446 + Echvi_0356 0.55 -0.3
384,447 - Echvi_0356 0.55 -0.1
384,447 - Echvi_0356 0.55 +0.1
384,495 - Echvi_0356 0.59 +0.0
384,495 - Echvi_0356 0.59 -0.2
384,620 + Echvi_0356 0.68 -0.4
384,620 + Echvi_0356 0.68 -0.5
384,674 - Echvi_0356 0.72 -0.6
384,725 + Echvi_0356 0.75 -0.4
384,725 + Echvi_0356 0.75 -1.3
384,726 - Echvi_0356 0.75 +2.2
384,727 + Echvi_0356 0.75 +1.3
384,802 - Echvi_0356 0.81 -0.1
384,831 - Echvi_0356 0.83 -0.2
384,838 - Echvi_0356 0.83 -1.0
384,866 + Echvi_0356 0.85 +0.3
384,867 - Echvi_0356 0.85 +1.7
384,868 + Echvi_0356 0.85 +0.3
384,868 + Echvi_0356 0.85 +0.1
384,869 - +0.9
384,925 + Echvi_0356 0.89 -2.8
384,925 + Echvi_0356 0.89 -0.1
384,945 + +1.1
385,021 + -1.2
385,021 + +2.3
385,190 + Echvi_0357 0.13 -0.7
385,191 - Echvi_0357 0.13 +0.4
385,356 + Echvi_0357 0.48 +0.4
385,357 - Echvi_0357 0.48 +0.4
385,516 + Echvi_0357 0.81 +0.3
385,516 + Echvi_0357 0.81 +0.5
385,517 - Echvi_0357 0.81 -2.2
385,517 - Echvi_0357 0.81 +0.3
385,517 - Echvi_0357 0.81 -1.1
385,517 - Echvi_0357 0.81 -0.3
385,517 - Echvi_0357 0.81 -0.7
385,531 + Echvi_0357 0.84 -1.0
385,533 + Echvi_0357 0.84 +0.6
385,533 + Echvi_0357 0.84 +0.1
385,592 - -0.0
385,603 + -0.3
385,614 + -0.0
385,627 - -1.2
385,657 + -0.1
385,660 + -1.1
385,660 + +2.9
385,660 + -0.2
385,661 - -0.2
385,661 - -0.0
385,688 - -0.1
385,691 - -0.7
385,724 + -0.4
385,768 - -0.8
385,831 + -0.5
385,832 - +0.5
385,900 + +0.9
385,900 + -1.4
385,900 + -0.6
385,901 - -0.6
385,901 - -0.3
385,904 + +0.9
385,904 + +0.9
385,904 + -0.4
385,905 - +0.1
385,909 + -0.3
385,910 - +0.2
386,036 + +2.8
386,036 + +0.9
386,037 - -0.0

Or see this region's nucleotide sequence