Strain Fitness in Agrobacterium fabrum C58 around Atu0289

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0288 and Atu0289 are separated by 155 nucleotidesAtu0289 and Atu0290 are separated by 61 nucleotidesAtu0290 and Atu0291 are separated by 426 nucleotides Atu0288: Atu0288 - hypothetical protein, at 282,202 to 283,479 Atu0288 Atu0289: Atu0289 - Sun protein, at 283,635 to 284,924 Atu0289 Atu0290: Atu0290 - rare lipoprotein A, at 284,986 to 285,354 Atu0290 Atu0291: Atu0291 - hypothetical protein, at 285,781 to 286,653 Atu0291 Position (kb) 283 284 285Strain fitness (log2 ratio) -2 -1 0 1 2at 282.640 kb on + strand, within Atu0288at 282.646 kb on - strand, within Atu0288at 282.669 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.702 kb on - strand, within Atu0288at 282.727 kb on + strand, within Atu0288at 282.746 kb on + strand, within Atu0288at 282.754 kb on - strand, within Atu0288at 282.773 kb on + strand, within Atu0288at 282.774 kb on - strand, within Atu0288at 282.774 kb on - strand, within Atu0288at 282.781 kb on - strand, within Atu0288at 282.796 kb on - strand, within Atu0288at 282.875 kb on + strand, within Atu0288at 282.883 kb on - strand, within Atu0288at 282.883 kb on - strand, within Atu0288at 282.900 kb on + strand, within Atu0288at 282.908 kb on - strand, within Atu0288at 282.910 kb on + strand, within Atu0288at 282.910 kb on + strand, within Atu0288at 282.918 kb on - strand, within Atu0288at 282.961 kb on - strand, within Atu0288at 282.967 kb on + strand, within Atu0288at 283.003 kb on - strand, within Atu0288at 283.003 kb on - strand, within Atu0288at 283.013 kb on - strand, within Atu0288at 283.013 kb on - strand, within Atu0288at 283.117 kb on + strand, within Atu0288at 283.132 kb on + strand, within Atu0288at 283.137 kb on + strand, within Atu0288at 283.162 kb on + strand, within Atu0288at 283.170 kb on - strand, within Atu0288at 283.240 kb on + strand, within Atu0288at 283.259 kb on + strand, within Atu0288at 283.259 kb on + strand, within Atu0288at 283.259 kb on + strand, within Atu0288at 283.267 kb on - strand, within Atu0288at 283.312 kb on - strand, within Atu0288at 283.312 kb on - strand, within Atu0288at 283.317 kb on - strand, within Atu0288at 283.421 kb on - strandat 283.488 kb on + strandat 283.489 kb on + strandat 283.538 kb on - strandat 283.538 kb on - strandat 283.632 kb on + strandat 283.640 kb on - strandat 283.764 kb on + strand, within Atu0289at 283.772 kb on - strand, within Atu0289at 283.881 kb on + strand, within Atu0289at 283.881 kb on + strand, within Atu0289at 283.889 kb on - strand, within Atu0289at 283.896 kb on - strand, within Atu0289at 284.005 kb on + strand, within Atu0289at 284.009 kb on - strand, within Atu0289at 284.067 kb on + strand, within Atu0289at 284.075 kb on - strand, within Atu0289at 284.148 kb on + strand, within Atu0289at 284.156 kb on - strand, within Atu0289at 284.222 kb on - strand, within Atu0289at 284.274 kb on + strand, within Atu0289at 284.282 kb on - strand, within Atu0289at 284.287 kb on + strand, within Atu0289at 284.295 kb on - strand, within Atu0289at 284.341 kb on - strand, within Atu0289at 284.353 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.465 kb on - strand, within Atu0289at 284.496 kb on - strand, within Atu0289at 284.497 kb on + strand, within Atu0289at 284.691 kb on + strand, within Atu0289at 284.719 kb on + strand, within Atu0289at 284.740 kb on - strand, within Atu0289at 284.830 kb on + strandat 284.934 kb on - strandat 284.985 kb on - strandat 284.985 kb on - strandat 285.021 kb on - strandat 285.023 kb on - strand, within Atu0290at 285.059 kb on + strand, within Atu0290at 285.119 kb on + strand, within Atu0290at 285.203 kb on - strand, within Atu0290at 285.216 kb on + strand, within Atu0290at 285.235 kb on + strand, within Atu0290at 285.240 kb on + strand, within Atu0290at 285.259 kb on + strand, within Atu0290at 285.280 kb on + strand, within Atu0290at 285.306 kb on - strand, within Atu0290at 285.410 kb on + strandat 285.410 kb on + strandat 285.418 kb on - strandat 285.418 kb on - strandat 285.777 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
282,640 + Atu0288 0.34 -0.3
282,646 - Atu0288 0.35 +0.4
282,669 + Atu0288 0.37 -0.2
282,671 + Atu0288 0.37 +1.8
282,671 + Atu0288 0.37 -0.7
282,671 + Atu0288 0.37 +0.0
282,679 - Atu0288 0.37 -0.0
282,679 - Atu0288 0.37 +0.1
282,679 - Atu0288 0.37 +0.4
282,679 - Atu0288 0.37 -0.1
282,702 - Atu0288 0.39 -0.1
282,727 + Atu0288 0.41 -0.1
282,746 + Atu0288 0.43 -0.6
282,754 - Atu0288 0.43 -1.1
282,773 + Atu0288 0.45 +0.7
282,774 - Atu0288 0.45 +0.3
282,774 - Atu0288 0.45 -0.7
282,781 - Atu0288 0.45 -0.2
282,796 - Atu0288 0.46 +0.2
282,875 + Atu0288 0.53 -0.1
282,883 - Atu0288 0.53 +1.5
282,883 - Atu0288 0.53 +0.1
282,900 + Atu0288 0.55 -0.6
282,908 - Atu0288 0.55 +0.8
282,910 + Atu0288 0.55 +0.3
282,910 + Atu0288 0.55 -0.2
282,918 - Atu0288 0.56 -0.3
282,961 - Atu0288 0.59 +0.7
282,967 + Atu0288 0.60 -0.3
283,003 - Atu0288 0.63 -0.5
283,003 - Atu0288 0.63 +0.4
283,013 - Atu0288 0.63 -1.4
283,013 - Atu0288 0.63 -0.0
283,117 + Atu0288 0.72 +0.3
283,132 + Atu0288 0.73 +0.6
283,137 + Atu0288 0.73 +0.1
283,162 + Atu0288 0.75 +0.5
283,170 - Atu0288 0.76 +2.6
283,240 + Atu0288 0.81 +0.3
283,259 + Atu0288 0.83 +0.1
283,259 + Atu0288 0.83 +1.0
283,259 + Atu0288 0.83 -0.2
283,267 - Atu0288 0.83 +0.1
283,312 - Atu0288 0.87 -0.6
283,312 - Atu0288 0.87 +0.1
283,317 - Atu0288 0.87 -0.2
283,421 - -0.1
283,488 + -0.1
283,489 + -0.1
283,538 - +0.1
283,538 - +1.2
283,632 + -0.1
283,640 - +0.3
283,764 + Atu0289 0.10 +0.3
283,772 - Atu0289 0.11 -1.3
283,881 + Atu0289 0.19 -0.4
283,881 + Atu0289 0.19 -0.3
283,889 - Atu0289 0.20 -0.2
283,896 - Atu0289 0.20 -0.5
284,005 + Atu0289 0.29 +0.5
284,009 - Atu0289 0.29 -0.5
284,067 + Atu0289 0.33 -1.9
284,075 - Atu0289 0.34 +0.0
284,148 + Atu0289 0.40 +0.4
284,156 - Atu0289 0.40 +0.0
284,222 - Atu0289 0.46 +0.1
284,274 + Atu0289 0.50 -0.5
284,282 - Atu0289 0.50 -0.5
284,287 + Atu0289 0.51 -1.1
284,295 - Atu0289 0.51 +0.2
284,341 - Atu0289 0.55 -0.6
284,353 + Atu0289 0.56 +0.3
284,456 + Atu0289 0.64 -0.3
284,456 + Atu0289 0.64 +0.8
284,456 + Atu0289 0.64 -0.9
284,456 + Atu0289 0.64 +0.1
284,456 + Atu0289 0.64 +0.3
284,456 + Atu0289 0.64 -0.2
284,456 + Atu0289 0.64 -0.3
284,464 - Atu0289 0.64 -0.1
284,464 - Atu0289 0.64 -0.4
284,464 - Atu0289 0.64 -0.6
284,464 - Atu0289 0.64 -0.9
284,464 - Atu0289 0.64 -0.2
284,464 - Atu0289 0.64 -0.4
284,464 - Atu0289 0.64 -1.2
284,464 - Atu0289 0.64 -0.5
284,464 - Atu0289 0.64 -0.8
284,464 - Atu0289 0.64 -1.6
284,464 - Atu0289 0.64 -0.2
284,464 - Atu0289 0.64 -0.3
284,464 - Atu0289 0.64 +0.7
284,464 - Atu0289 0.64 -1.9
284,464 - Atu0289 0.64 -0.3
284,464 - Atu0289 0.64 -1.3
284,464 - Atu0289 0.64 -0.2
284,464 - Atu0289 0.64 -1.2
284,464 - Atu0289 0.64 +0.1
284,464 - Atu0289 0.64 -0.5
284,464 - Atu0289 0.64 -0.4
284,465 - Atu0289 0.64 -0.9
284,496 - Atu0289 0.67 +0.1
284,497 + Atu0289 0.67 +0.3
284,691 + Atu0289 0.82 -1.0
284,719 + Atu0289 0.84 -0.3
284,740 - Atu0289 0.86 -0.2
284,830 + -0.1
284,934 - -0.0
284,985 - -0.4
284,985 - +0.5
285,021 - +0.9
285,023 - Atu0290 0.10 -0.5
285,059 + Atu0290 0.20 -0.2
285,119 + Atu0290 0.36 +1.2
285,203 - Atu0290 0.59 -0.3
285,216 + Atu0290 0.62 +0.5
285,235 + Atu0290 0.67 +0.5
285,240 + Atu0290 0.69 +1.1
285,259 + Atu0290 0.74 +0.1
285,280 + Atu0290 0.80 +0.2
285,306 - Atu0290 0.87 +0.5
285,410 + -0.1
285,410 + +0.6
285,418 - -1.0
285,418 - +0.6
285,777 + +0.2

Or see this region's nucleotide sequence