Strain Fitness in Escherichia coli BW25113 around b2248

Experiment: Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaW and yfaX are separated by 14 nucleotidesyfaX and yfaY are separated by 219 nucleotides b2247: yfaW - predicted enolase (RefSeq), at 2,358,231 to 2,359,436 yfaW b2248: yfaX - predicted DNA-binding transcriptional regulator (NCBI), at 2,359,451 to 2,360,233 yfaX b2249: yfaY - competence damage-inducible protein A (NCBI), at 2,360,453 to 2,361,655 yfaY Position (kb) 2359 2360 2361Strain fitness (log2 ratio) -2 -1 0 1 2at 2358.478 kb on - strand, within yfaWat 2358.589 kb on + strand, within yfaWat 2358.591 kb on + strand, within yfaWat 2358.674 kb on + strand, within yfaWat 2358.707 kb on + strand, within yfaWat 2358.865 kb on + strand, within yfaWat 2358.870 kb on - strand, within yfaWat 2358.899 kb on - strand, within yfaWat 2359.027 kb on - strand, within yfaWat 2359.077 kb on - strand, within yfaWat 2359.077 kb on - strand, within yfaWat 2359.077 kb on - strand, within yfaWat 2359.079 kb on - strand, within yfaWat 2359.109 kb on + strand, within yfaWat 2359.128 kb on - strand, within yfaWat 2359.144 kb on - strand, within yfaWat 2359.226 kb on + strand, within yfaWat 2359.226 kb on + strand, within yfaWat 2359.230 kb on - strand, within yfaWat 2359.439 kb on - strandat 2359.439 kb on - strandat 2359.442 kb on + strandat 2359.442 kb on + strandat 2359.482 kb on - strandat 2359.514 kb on + strandat 2359.514 kb on + strandat 2359.686 kb on - strand, within yfaXat 2359.778 kb on + strand, within yfaXat 2359.778 kb on + strand, within yfaXat 2359.907 kb on + strand, within yfaXat 2360.320 kb on - strandat 2360.320 kb on - strandat 2360.432 kb on - strandat 2360.440 kb on - strandat 2360.442 kb on + strandat 2360.465 kb on + strandat 2360.490 kb on - strandat 2360.490 kb on - strandat 2360.571 kb on + strandat 2360.576 kb on + strand, within yfaYat 2360.706 kb on + strand, within yfaYat 2360.855 kb on - strand, within yfaYat 2360.855 kb on - strand, within yfaYat 2360.896 kb on + strand, within yfaYat 2361.049 kb on + strand, within yfaYat 2361.057 kb on - strand, within yfaYat 2361.100 kb on - strand, within yfaYat 2361.100 kb on - strand, within yfaYat 2361.200 kb on + strand, within yfaY

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 750 mM
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2,358,478 - yfaW b2247 0.20 -0.6
2,358,589 + yfaW b2247 0.30 -0.2
2,358,591 + yfaW b2247 0.30 +0.5
2,358,674 + yfaW b2247 0.37 +0.1
2,358,707 + yfaW b2247 0.39 +1.3
2,358,865 + yfaW b2247 0.53 -0.3
2,358,870 - yfaW b2247 0.53 -1.9
2,358,899 - yfaW b2247 0.55 +0.8
2,359,027 - yfaW b2247 0.66 +1.0
2,359,077 - yfaW b2247 0.70 -0.9
2,359,077 - yfaW b2247 0.70 +0.4
2,359,077 - yfaW b2247 0.70 +0.1
2,359,079 - yfaW b2247 0.70 -0.4
2,359,109 + yfaW b2247 0.73 +0.1
2,359,128 - yfaW b2247 0.74 +0.6
2,359,144 - yfaW b2247 0.76 -0.9
2,359,226 + yfaW b2247 0.83 +0.5
2,359,226 + yfaW b2247 0.83 +1.3
2,359,230 - yfaW b2247 0.83 -0.2
2,359,439 - -0.4
2,359,439 - -0.9
2,359,442 + +0.5
2,359,442 + +0.4
2,359,482 - +0.7
2,359,514 + +0.7
2,359,514 + -0.9
2,359,686 - yfaX b2248 0.30 +2.5
2,359,778 + yfaX b2248 0.42 +2.3
2,359,778 + yfaX b2248 0.42 +1.0
2,359,907 + yfaX b2248 0.58 +1.6
2,360,320 - -0.3
2,360,320 - +0.7
2,360,432 - -1.7
2,360,440 - +1.6
2,360,442 + +0.7
2,360,465 + -1.3
2,360,490 - -0.9
2,360,490 - +1.5
2,360,571 + +0.2
2,360,576 + yfaY b2249 0.10 +0.3
2,360,706 + yfaY b2249 0.21 +0.3
2,360,855 - yfaY b2249 0.33 +1.5
2,360,855 - yfaY b2249 0.33 +0.7
2,360,896 + yfaY b2249 0.37 +1.1
2,361,049 + yfaY b2249 0.50 -0.6
2,361,057 - yfaY b2249 0.50 -0.5
2,361,100 - yfaY b2249 0.54 -1.7
2,361,100 - yfaY b2249 0.54 -0.1
2,361,200 + yfaY b2249 0.62 +0.2

Or see this region's nucleotide sequence