Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05830

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS05820 and RPSI07_RS05825 are separated by 81 nucleotidesRPSI07_RS05825 and RPSI07_RS05830 are separated by 3 nucleotidesRPSI07_RS05830 and RPSI07_RS05835 are separated by 116 nucleotidesRPSI07_RS05835 and RPSI07_RS05840 are separated by 199 nucleotides RPSI07_RS05820: RPSI07_RS05820 - L-aspartate oxidase, at 1,584,559 to 1,586,169 _RS05820 RPSI07_RS05825: RPSI07_RS05825 - sulfite exporter TauE/SafE family protein, at 1,586,251 to 1,587,033 _RS05825 RPSI07_RS05830: RPSI07_RS05830 - AMP-dependent synthetase, at 1,587,037 to 1,588,725 _RS05830 RPSI07_RS05835: RPSI07_RS05835 - hypothetical protein, at 1,588,842 to 1,589,351 _RS05835 RPSI07_RS05840: RPSI07_RS05840 - LysR family transcriptional regulator, at 1,589,551 to 1,590,435 _RS05840 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -2 -1 0 1 2at 1586.353 kb on + strand, within RPSI07_RS05825at 1586.443 kb on + strand, within RPSI07_RS05825at 1586.444 kb on - strand, within RPSI07_RS05825at 1586.593 kb on + strand, within RPSI07_RS05825at 1586.593 kb on + strand, within RPSI07_RS05825at 1586.594 kb on - strand, within RPSI07_RS05825at 1586.594 kb on - strand, within RPSI07_RS05825at 1586.691 kb on - strand, within RPSI07_RS05825at 1586.695 kb on + strand, within RPSI07_RS05825at 1586.695 kb on + strand, within RPSI07_RS05825at 1586.695 kb on + strand, within RPSI07_RS05825at 1586.695 kb on + strand, within RPSI07_RS05825at 1586.695 kb on + strand, within RPSI07_RS05825at 1586.695 kb on + strand, within RPSI07_RS05825at 1586.696 kb on - strand, within RPSI07_RS05825at 1586.696 kb on - strand, within RPSI07_RS05825at 1586.737 kb on + strand, within RPSI07_RS05825at 1586.737 kb on + strand, within RPSI07_RS05825at 1586.737 kb on + strand, within RPSI07_RS05825at 1586.738 kb on - strand, within RPSI07_RS05825at 1586.738 kb on - strand, within RPSI07_RS05825at 1586.738 kb on - strand, within RPSI07_RS05825at 1586.869 kb on + strand, within RPSI07_RS05825at 1586.870 kb on - strand, within RPSI07_RS05825at 1586.870 kb on - strand, within RPSI07_RS05825at 1586.870 kb on - strand, within RPSI07_RS05825at 1586.870 kb on - strand, within RPSI07_RS05825at 1586.870 kb on - strand, within RPSI07_RS05825at 1586.870 kb on - strand, within RPSI07_RS05825at 1587.031 kb on + strandat 1587.188 kb on + strandat 1587.188 kb on + strandat 1587.189 kb on - strandat 1587.189 kb on - strandat 1587.189 kb on - strandat 1587.189 kb on - strandat 1587.384 kb on - strand, within RPSI07_RS05830at 1587.384 kb on - strand, within RPSI07_RS05830at 1587.422 kb on + strand, within RPSI07_RS05830at 1587.422 kb on + strand, within RPSI07_RS05830at 1587.422 kb on + strand, within RPSI07_RS05830at 1587.423 kb on - strand, within RPSI07_RS05830at 1587.423 kb on - strand, within RPSI07_RS05830at 1587.423 kb on - strand, within RPSI07_RS05830at 1587.423 kb on - strand, within RPSI07_RS05830at 1587.423 kb on - strand, within RPSI07_RS05830at 1587.431 kb on + strand, within RPSI07_RS05830at 1587.470 kb on + strand, within RPSI07_RS05830at 1587.470 kb on + strand, within RPSI07_RS05830at 1587.471 kb on - strand, within RPSI07_RS05830at 1587.471 kb on - strand, within RPSI07_RS05830at 1587.518 kb on + strand, within RPSI07_RS05830at 1587.518 kb on + strand, within RPSI07_RS05830at 1587.518 kb on + strand, within RPSI07_RS05830at 1587.614 kb on + strand, within RPSI07_RS05830at 1587.883 kb on + strand, within RPSI07_RS05830at 1587.883 kb on + strand, within RPSI07_RS05830at 1587.883 kb on + strand, within RPSI07_RS05830at 1587.883 kb on + strand, within RPSI07_RS05830at 1587.883 kb on + strand, within RPSI07_RS05830at 1587.883 kb on + strand, within RPSI07_RS05830at 1587.884 kb on - strand, within RPSI07_RS05830at 1587.884 kb on - strand, within RPSI07_RS05830at 1587.884 kb on - strand, within RPSI07_RS05830at 1587.884 kb on - strand, within RPSI07_RS05830at 1587.884 kb on - strand, within RPSI07_RS05830at 1587.884 kb on - strand, within RPSI07_RS05830at 1587.917 kb on + strand, within RPSI07_RS05830at 1587.917 kb on + strand, within RPSI07_RS05830at 1587.917 kb on + strand, within RPSI07_RS05830at 1587.917 kb on + strand, within RPSI07_RS05830at 1587.917 kb on + strand, within RPSI07_RS05830at 1587.917 kb on + strand, within RPSI07_RS05830at 1587.917 kb on + strand, within RPSI07_RS05830at 1587.918 kb on - strand, within RPSI07_RS05830at 1587.918 kb on - strand, within RPSI07_RS05830at 1587.918 kb on - strand, within RPSI07_RS05830at 1587.923 kb on + strand, within RPSI07_RS05830at 1587.923 kb on + strand, within RPSI07_RS05830at 1587.924 kb on - strand, within RPSI07_RS05830at 1588.040 kb on + strand, within RPSI07_RS05830at 1588.040 kb on + strand, within RPSI07_RS05830at 1588.040 kb on + strand, within RPSI07_RS05830at 1588.040 kb on + strand, within RPSI07_RS05830at 1588.041 kb on - strand, within RPSI07_RS05830at 1588.041 kb on - strand, within RPSI07_RS05830at 1588.041 kb on - strand, within RPSI07_RS05830at 1588.041 kb on - strand, within RPSI07_RS05830at 1588.124 kb on + strand, within RPSI07_RS05830at 1588.124 kb on + strand, within RPSI07_RS05830at 1588.125 kb on - strand, within RPSI07_RS05830at 1588.187 kb on + strand, within RPSI07_RS05830at 1588.601 kb on + strandat 1588.664 kb on + strandat 1588.665 kb on - strandat 1589.143 kb on + strand, within RPSI07_RS05835at 1589.143 kb on + strand, within RPSI07_RS05835at 1589.144 kb on - strand, within RPSI07_RS05835at 1589.144 kb on - strand, within RPSI07_RS05835at 1589.144 kb on - strand, within RPSI07_RS05835at 1589.158 kb on + strand, within RPSI07_RS05835at 1589.159 kb on - strand, within RPSI07_RS05835at 1589.291 kb on - strand, within RPSI07_RS05835at 1589.291 kb on - strand, within RPSI07_RS05835at 1589.291 kb on - strand, within RPSI07_RS05835at 1589.291 kb on - strand, within RPSI07_RS05835at 1589.351 kb on + strandat 1589.351 kb on + strandat 1589.351 kb on + strandat 1589.482 kb on + strandat 1589.483 kb on - strandat 1589.483 kb on - strandat 1589.483 kb on - strandat 1589.588 kb on + strandat 1589.588 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
remove
1,586,353 + RPSI07_RS05825 0.13 -0.3
1,586,443 + RPSI07_RS05825 0.25 -1.1
1,586,444 - RPSI07_RS05825 0.25 -0.2
1,586,593 + RPSI07_RS05825 0.44 -0.1
1,586,593 + RPSI07_RS05825 0.44 +2.1
1,586,594 - RPSI07_RS05825 0.44 -1.3
1,586,594 - RPSI07_RS05825 0.44 +0.3
1,586,691 - RPSI07_RS05825 0.56 -0.1
1,586,695 + RPSI07_RS05825 0.57 -2.4
1,586,695 + RPSI07_RS05825 0.57 +0.6
1,586,695 + RPSI07_RS05825 0.57 +0.2
1,586,695 + RPSI07_RS05825 0.57 -0.2
1,586,695 + RPSI07_RS05825 0.57 -0.1
1,586,695 + RPSI07_RS05825 0.57 +0.0
1,586,696 - RPSI07_RS05825 0.57 -1.0
1,586,696 - RPSI07_RS05825 0.57 -1.9
1,586,737 + RPSI07_RS05825 0.62 -0.1
1,586,737 + RPSI07_RS05825 0.62 -0.1
1,586,737 + RPSI07_RS05825 0.62 -2.5
1,586,738 - RPSI07_RS05825 0.62 -0.3
1,586,738 - RPSI07_RS05825 0.62 +0.1
1,586,738 - RPSI07_RS05825 0.62 -0.5
1,586,869 + RPSI07_RS05825 0.79 -1.2
1,586,870 - RPSI07_RS05825 0.79 -0.3
1,586,870 - RPSI07_RS05825 0.79 +1.6
1,586,870 - RPSI07_RS05825 0.79 -0.5
1,586,870 - RPSI07_RS05825 0.79 +0.1
1,586,870 - RPSI07_RS05825 0.79 +0.2
1,586,870 - RPSI07_RS05825 0.79 -0.2
1,587,031 + +0.5
1,587,188 + -0.9
1,587,188 + +1.7
1,587,189 - +0.6
1,587,189 - -0.8
1,587,189 - -0.7
1,587,189 - +0.1
1,587,384 - RPSI07_RS05830 0.21 +0.1
1,587,384 - RPSI07_RS05830 0.21 -0.4
1,587,422 + RPSI07_RS05830 0.23 +0.5
1,587,422 + RPSI07_RS05830 0.23 +1.1
1,587,422 + RPSI07_RS05830 0.23 +0.0
1,587,423 - RPSI07_RS05830 0.23 +0.7
1,587,423 - RPSI07_RS05830 0.23 -1.4
1,587,423 - RPSI07_RS05830 0.23 -0.2
1,587,423 - RPSI07_RS05830 0.23 -0.6
1,587,423 - RPSI07_RS05830 0.23 +0.0
1,587,431 + RPSI07_RS05830 0.23 +0.0
1,587,470 + RPSI07_RS05830 0.26 +1.5
1,587,470 + RPSI07_RS05830 0.26 +0.1
1,587,471 - RPSI07_RS05830 0.26 -1.4
1,587,471 - RPSI07_RS05830 0.26 +0.9
1,587,518 + RPSI07_RS05830 0.28 -0.1
1,587,518 + RPSI07_RS05830 0.28 +0.5
1,587,518 + RPSI07_RS05830 0.28 +1.0
1,587,614 + RPSI07_RS05830 0.34 -1.4
1,587,883 + RPSI07_RS05830 0.50 +1.2
1,587,883 + RPSI07_RS05830 0.50 -1.3
1,587,883 + RPSI07_RS05830 0.50 +0.3
1,587,883 + RPSI07_RS05830 0.50 +0.2
1,587,883 + RPSI07_RS05830 0.50 -1.6
1,587,883 + RPSI07_RS05830 0.50 -0.3
1,587,884 - RPSI07_RS05830 0.50 -1.0
1,587,884 - RPSI07_RS05830 0.50 -0.2
1,587,884 - RPSI07_RS05830 0.50 -0.1
1,587,884 - RPSI07_RS05830 0.50 -1.6
1,587,884 - RPSI07_RS05830 0.50 -0.2
1,587,884 - RPSI07_RS05830 0.50 +0.2
1,587,917 + RPSI07_RS05830 0.52 -0.5
1,587,917 + RPSI07_RS05830 0.52 +0.4
1,587,917 + RPSI07_RS05830 0.52 -0.2
1,587,917 + RPSI07_RS05830 0.52 +0.1
1,587,917 + RPSI07_RS05830 0.52 +1.3
1,587,917 + RPSI07_RS05830 0.52 -1.4
1,587,917 + RPSI07_RS05830 0.52 -0.2
1,587,918 - RPSI07_RS05830 0.52 -1.7
1,587,918 - RPSI07_RS05830 0.52 -0.7
1,587,918 - RPSI07_RS05830 0.52 -0.9
1,587,923 + RPSI07_RS05830 0.52 -0.4
1,587,923 + RPSI07_RS05830 0.52 +1.5
1,587,924 - RPSI07_RS05830 0.53 -2.2
1,588,040 + RPSI07_RS05830 0.59 -0.3
1,588,040 + RPSI07_RS05830 0.59 +0.3
1,588,040 + RPSI07_RS05830 0.59 -0.9
1,588,040 + RPSI07_RS05830 0.59 -1.0
1,588,041 - RPSI07_RS05830 0.59 -0.9
1,588,041 - RPSI07_RS05830 0.59 -0.4
1,588,041 - RPSI07_RS05830 0.59 +2.5
1,588,041 - RPSI07_RS05830 0.59 +0.2
1,588,124 + RPSI07_RS05830 0.64 -1.1
1,588,124 + RPSI07_RS05830 0.64 +0.2
1,588,125 - RPSI07_RS05830 0.64 +0.1
1,588,187 + RPSI07_RS05830 0.68 +0.0
1,588,601 + +0.3
1,588,664 + -1.0
1,588,665 - +0.2
1,589,143 + RPSI07_RS05835 0.59 +1.6
1,589,143 + RPSI07_RS05835 0.59 -1.8
1,589,144 - RPSI07_RS05835 0.59 +1.0
1,589,144 - RPSI07_RS05835 0.59 +0.9
1,589,144 - RPSI07_RS05835 0.59 +0.9
1,589,158 + RPSI07_RS05835 0.62 -0.5
1,589,159 - RPSI07_RS05835 0.62 +0.5
1,589,291 - RPSI07_RS05835 0.88 +0.6
1,589,291 - RPSI07_RS05835 0.88 +1.0
1,589,291 - RPSI07_RS05835 0.88 -0.4
1,589,291 - RPSI07_RS05835 0.88 +1.2
1,589,351 + +0.5
1,589,351 + -0.1
1,589,351 + -2.0
1,589,482 + -0.2
1,589,483 - +0.2
1,589,483 - +0.6
1,589,483 - +0.1
1,589,588 + -0.3
1,589,588 + -0.2

Or see this region's nucleotide sequence