Strain Fitness in Pseudomonas sp. RS175 around PFR28_03189

Experiment: Malonic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Malonic (C) 10 mM
3,695,348	+		PFR28_03187	0.87	-0.6
3,695,348	+		PFR28_03187	0.87	-0.2
3,695,348	+		PFR28_03187	0.87	-0.2
3,695,349	-		PFR28_03187	0.87	-0.3
3,695,349	-		PFR28_03187	0.87	+1.5
3,695,349	-		PFR28_03187	0.87	+0.5
3,695,349	-		PFR28_03187	0.87	+0.0
3,695,349	-		PFR28_03187	0.87	-0.2
3,695,350	+		PFR28_03187	0.87	-0.8
3,695,350	+		PFR28_03187	0.87	-4.0
3,695,350	+		PFR28_03187	0.87	-0.9
3,695,350	+		PFR28_03187	0.87	+0.3
3,695,350	+		PFR28_03187	0.87	-0.1
3,695,351	-		PFR28_03187	0.87	+0.5
3,695,351	-		PFR28_03187	0.87	+1.7
3,695,351	-		PFR28_03187	0.87	+1.6
3,695,351	-		PFR28_03187	0.87	+1.5
3,695,351	-		PFR28_03187	0.87	+0.9
3,695,351	-		PFR28_03187	0.87	+0.7
3,695,351	-		PFR28_03187	0.87	+0.1
3,695,351	-		PFR28_03187	0.87	+0.2
3,695,351	-		PFR28_03187	0.87	+0.0
3,695,351	-		PFR28_03187	0.87	-0.7
3,695,351	-		PFR28_03187	0.87	-1.1
3,695,351	-		PFR28_03187	0.87	+0.7
3,695,351	-		PFR28_03187	0.87	+0.6
3,695,402	+				-0.8
3,695,402	+				+0.0
3,695,403	-				+0.8
3,695,411	+				-1.0
3,695,411	+				+0.8
3,695,411	+				-0.4
3,695,411	+				+0.3
3,695,411	+				-1.1
3,695,411	+				+0.9
3,695,411	+				+0.4
3,695,412	-				-0.1
3,695,412	-				+0.1
3,695,412	-				-0.7
3,695,412	-				-0.4
3,695,412	-				-1.2
3,695,616	+				-1.3
3,695,616	+				+0.6
3,695,617	-				-0.1
3,695,619	+				+0.3
3,695,619	+				+0.9
3,695,619	+				-0.4
3,695,619	+				-0.1
3,695,619	+				+0.3
3,695,619	+				+0.4
3,695,619	+				-0.5
3,695,619	+				+0.1
3,695,619	+				-0.2
3,695,619	+				+0.7
3,695,619	+				-0.4
3,695,619	+				-0.1
3,695,619	+				-0.0
3,695,620	-				-0.3
3,695,620	-				-0.6
3,695,631	-				-0.0
3,695,631	-				-1.1
3,695,853	+		PFR28_03188	0.45	-1.0
3,695,853	+		PFR28_03188	0.45	+0.4
3,695,853	+		PFR28_03188	0.45	+0.1
3,695,854	-		PFR28_03188	0.45	-1.1
3,695,854	-		PFR28_03188	0.45	-1.3
3,695,854	-		PFR28_03188	0.45	-0.6
3,695,854	-		PFR28_03188	0.45	+0.5
3,695,854	-		PFR28_03188	0.45	+0.1
3,695,854	-		PFR28_03188	0.45	+0.3
3,695,890	+		PFR28_03188	0.52	-1.8
3,695,890	+		PFR28_03188	0.52	-0.1
3,695,891	-		PFR28_03188	0.52	-0.5
3,695,977	-		PFR28_03188	0.68	+0.1
3,695,977	-		PFR28_03188	0.68	-0.3
3,696,118	+				-1.9
3,696,360	+				-2.4
3,696,360	+				-5.1
3,696,360	+				-4.8
3,696,360	+				-2.8
3,696,360	+				-1.7
3,696,360	+				+1.5
3,696,360	+				-4.4
3,696,360	+				-3.2
3,696,360	+				-3.3
3,696,360	+				-1.7
3,696,360	+				-3.9
3,696,360	+				-2.4
3,696,360	+				-1.7
3,696,360	+				-1.6
3,696,360	+				-4.0
3,696,361	-				-3.5
3,696,361	-				-3.4
3,696,361	-				-2.6
3,696,361	-				-4.3
3,696,361	-				-2.5
3,696,361	-				-3.5
3,696,361	-				-4.0
3,696,361	-				-2.2
3,696,361	-				-0.1
3,696,361	-				-2.7
3,696,361	-				-1.8
3,696,361	-				-5.1
3,696,361	-				-2.1
3,696,362	+				-3.7
3,696,362	+				-4.5
3,696,362	+				-2.9
3,696,363	-				-1.8
3,696,363	-				-2.5
3,696,363	-				-1.4
3,696,363	-				-1.8
3,696,390	+				-1.1
3,696,390	+				-2.5
3,696,390	+				-1.6
3,696,391	-				-3.8
3,696,391	-				-2.2
3,696,391	-				-3.6
3,696,441	+				-2.2
3,696,441	+				-1.2
3,696,441	+				-3.3
3,696,442	-				-2.9
3,696,462	+				-2.9
3,696,462	+				-3.7
3,696,462	+				-2.2
3,696,462	+				-3.0
3,696,463	-				-1.3
3,696,463	-				-4.3
3,696,463	-				-2.1
3,696,463	-				-1.5
3,696,463	-				-2.4
3,696,463	-				-4.9
3,696,463	-				-3.1
3,696,534	+				-2.8
3,696,534	+				-1.8
3,696,534	+				-2.8
3,696,535	-				-2.2
3,696,535	-				-3.6
3,696,708	+		PFR28_03189	0.11	-3.6
3,696,708	+		PFR28_03189	0.11	-2.1
3,696,708	+		PFR28_03189	0.11	-3.8
3,696,709	-		PFR28_03189	0.11	-0.1
3,696,709	-		PFR28_03189	0.11	-3.3
3,696,709	-		PFR28_03189	0.11	-1.3
3,696,709	-		PFR28_03189	0.11	-0.5
3,696,709	-		PFR28_03189	0.11	-4.4
3,696,966	+		PFR28_03189	0.19	-2.4
3,696,966	+		PFR28_03189	0.19	-3.0
3,696,966	+		PFR28_03189	0.19	+1.5
3,696,966	+		PFR28_03189	0.19	-1.8
3,696,966	+		PFR28_03189	0.19	-4.8
3,696,967	-		PFR28_03189	0.19	-2.9
3,696,967	-		PFR28_03189	0.19	-3.9
3,696,967	-		PFR28_03189	0.19	-4.2
3,697,023	+		PFR28_03189	0.20	-1.1
3,697,023	+		PFR28_03189	0.20	-3.2
3,697,023	+		PFR28_03189	0.20	-2.4
3,697,023	+		PFR28_03189	0.20	-2.8
3,697,023	+		PFR28_03189	0.20	-5.1
3,697,024	-		PFR28_03189	0.20	-5.0
3,697,024	-		PFR28_03189	0.20	-2.2
3,697,165	+		PFR28_03189	0.24	-2.2
3,697,166	-		PFR28_03189	0.24	-4.3
3,697,176	+		PFR28_03189	0.25	-1.5
3,697,177	-		PFR28_03189	0.25	-4.7
3,697,177	-		PFR28_03189	0.25	-4.0
3,697,373	+		PFR28_03189	0.30	-2.7
3,697,373	+		PFR28_03189	0.30	-0.7
3,697,373	+		PFR28_03189	0.30	-1.8
3,697,373	+		PFR28_03189	0.30	-2.9
3,697,374	-		PFR28_03189	0.30	-2.9
3,697,481	+		PFR28_03189	0.34	-1.2
3,697,482	-		PFR28_03189	0.34	-3.0
3,697,482	-		PFR28_03189	0.34	-4.2
3,697,506	+		PFR28_03189	0.34	-2.9
3,697,506	+		PFR28_03189	0.34	-4.2
3,697,506	+		PFR28_03189	0.34	-2.4
3,697,506	+		PFR28_03189	0.34	-3.5
3,697,507	-		PFR28_03189	0.34	-1.6
3,697,507	-		PFR28_03189	0.34	-3.2
3,697,515	+		PFR28_03189	0.34	-0.7
3,697,611	+		PFR28_03189	0.37	-1.7
3,697,612	-		PFR28_03189	0.37	-2.1
3,697,612	-		PFR28_03189	0.37	-1.0
3,697,677	+		PFR28_03189	0.39	-1.5
3,697,677	+		PFR28_03189	0.39	-4.5
3,697,677	+		PFR28_03189	0.39	-3.8
3,697,677	+		PFR28_03189	0.39	-4.5
3,697,677	+		PFR28_03189	0.39	-5.7
3,697,678	-		PFR28_03189	0.39	-2.5
3,697,678	-		PFR28_03189	0.39	-1.9
3,697,678	-		PFR28_03189	0.39	-2.0
3,697,678	-		PFR28_03189	0.39	+1.5
3,697,678	-		PFR28_03189	0.39	-1.3
3,697,678	-		PFR28_03189	0.39	-4.2
3,697,775	+		PFR28_03189	0.42	-3.7
3,697,776	-		PFR28_03189	0.42	-2.2
3,697,946	+		PFR28_03189	0.47	-3.6
3,698,179	+		PFR28_03189	0.54	-2.7
3,698,180	-		PFR28_03189	0.54	-2.8
3,698,379	+		PFR28_03189	0.59	-1.5
3,698,379	+		PFR28_03189	0.59	-4.7
3,698,380	-		PFR28_03189	0.59	-1.9
3,698,381	+		PFR28_03189	0.59	-4.0
3,698,382	-		PFR28_03189	0.59	-3.6
3,698,469	-		PFR28_03189	0.62	-2.8
3,698,561	+		PFR28_03189	0.65	-2.3
3,698,562	-		PFR28_03189	0.65	-2.4
3,698,681	+		PFR28_03189	0.68	-4.1
3,698,682	-		PFR28_03189	0.68	-3.8
3,698,697	+		PFR28_03189	0.69	-1.7
3,698,697	+		PFR28_03189	0.69	-4.8
3,698,697	+		PFR28_03189	0.69	-3.5
3,698,697	+		PFR28_03189	0.69	-3.0
3,699,122	-		PFR28_03189	0.81	+0.5
3,699,356	-		PFR28_03189	0.88	-3.5
3,699,632	+				-3.4
3,699,632	+				-3.5
3,699,632	+				-3.0
3,699,632	+				-2.1
3,699,632	+				-1.3
3,699,633	-				-1.6
3,699,633	-				-3.7
3,699,639	-				-2.9
3,699,639	-				-4.3
3,699,786	+				-0.1
3,699,787	-				-0.5
3,699,787	-				-0.2
3,699,787	-				-1.8
3,699,787	-				-0.3
3,699,787	-				-1.5
3,699,787	-				-0.8
3,699,903	+				-0.4
3,699,904	-				-1.5
3,699,904	-				-0.4
3,699,904	-				+0.1
3,700,142	-		PFR28_03190	0.11	-0.4
3,700,155	+		PFR28_03190	0.12	-1.1
3,700,156	-		PFR28_03190	0.12	+1.3
3,700,156	-		PFR28_03190	0.12	-0.9
3,700,166	+		PFR28_03190	0.13	+1.2
3,700,166	+		PFR28_03190	0.13	+0.7
3,700,166	+		PFR28_03190	0.13	+1.2
3,700,166	+		PFR28_03190	0.13	+0.7
3,700,167	-		PFR28_03190	0.13	-0.5
3,700,167	-		PFR28_03190	0.13	-0.1
3,700,167	-		PFR28_03190	0.13	+0.7
3,700,228	-		PFR28_03190	0.17	-0.8
3,700,228	-		PFR28_03190	0.17	+0.1
3,700,228	-		PFR28_03190	0.17	-0.5
3,700,327	+		PFR28_03190	0.24	-1.3
3,700,328	-		PFR28_03190	0.24	+0.8
3,700,328	-		PFR28_03190	0.24	+0.1
3,700,375	+		PFR28_03190	0.27	+1.2
3,700,375	+		PFR28_03190	0.27	+1.1
3,700,375	+		PFR28_03190	0.27	-1.1
3,700,375	+		PFR28_03190	0.27	+0.7
3,700,375	+		PFR28_03190	0.27	-0.0
3,700,376	-		PFR28_03190	0.27	-1.5
3,700,376	-		PFR28_03190	0.27	-0.6
3,700,376	-		PFR28_03190	0.27	-1.1
3,700,467	+		PFR28_03190	0.33	-1.2
3,700,468	-		PFR28_03190	0.33	+0.8
3,700,468	-		PFR28_03190	0.33	-0.0
3,700,468	-		PFR28_03190	0.33	+0.4
3,700,468	-		PFR28_03190	0.33	+1.2
3,700,563	+		PFR28_03190	0.39	+0.0
3,700,563	+		PFR28_03190	0.39	+0.5
3,700,564	-		PFR28_03190	0.39	-0.6
3,700,564	-		PFR28_03190	0.39	+0.6
3,700,572	+		PFR28_03190	0.40	-1.0
3,700,572	+		PFR28_03190	0.40	-0.8
3,700,573	-		PFR28_03190	0.40	-0.3
3,700,626	+		PFR28_03190	0.43	+0.6
3,700,626	+		PFR28_03190	0.43	-0.2
3,700,626	+		PFR28_03190	0.43	+0.2
3,700,626	+		PFR28_03190	0.43	-0.8
3,700,626	+		PFR28_03190	0.43	+1.3
3,700,626	+		PFR28_03190	0.43	-0.7
3,700,627	-		PFR28_03190	0.44	+1.0
3,700,627	-		PFR28_03190	0.44	-1.7
3,700,627	-		PFR28_03190	0.44	+1.5
3,700,689	+		PFR28_03190	0.48	-0.4
3,700,690	-		PFR28_03190	0.48	+0.0