Strain Fitness in Pseudomonas sp. RS175 around PFR28_00481

Experiment: Malonic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00480 and PFR28_00481 are separated by 47 nucleotidesPFR28_00481 and PFR28_00482 are separated by 91 nucleotidesPFR28_00482 and PFR28_00483 are separated by 129 nucleotides PFR28_00480: PFR28_00480 - HTH-type transcriptional activator CmpR, at 512,977 to 513,978 _00480 PFR28_00481: PFR28_00481 - Ferredoxin--NADP reductase, at 514,026 to 514,805 _00481 PFR28_00482: PFR28_00482 - tRNA (adenine(37)-N6)-methyltransferase, at 514,897 to 515,595 _00482 PFR28_00483: PFR28_00483 - hypothetical protein, at 515,725 to 516,186 _00483 Position (kb) 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1at 513.074 kb on + strandat 513.074 kb on + strandat 513.074 kb on + strandat 513.075 kb on - strandat 513.075 kb on - strandat 513.099 kb on - strand, within PFR28_00480at 513.099 kb on - strand, within PFR28_00480at 513.099 kb on - strand, within PFR28_00480at 513.099 kb on - strand, within PFR28_00480at 513.099 kb on - strand, within PFR28_00480at 513.099 kb on - strand, within PFR28_00480at 513.469 kb on + strand, within PFR28_00480at 513.470 kb on - strand, within PFR28_00480at 513.488 kb on + strand, within PFR28_00480at 513.489 kb on - strand, within PFR28_00480at 513.489 kb on - strand, within PFR28_00480at 513.489 kb on - strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.526 kb on + strand, within PFR28_00480at 513.527 kb on - strand, within PFR28_00480at 513.527 kb on - strand, within PFR28_00480at 513.527 kb on - strand, within PFR28_00480at 513.527 kb on - strand, within PFR28_00480at 513.527 kb on - strand, within PFR28_00480at 513.593 kb on + strand, within PFR28_00480at 513.593 kb on + strand, within PFR28_00480at 513.889 kb on + strandat 513.889 kb on + strandat 513.894 kb on + strandat 513.894 kb on + strandat 513.910 kb on - strandat 514.796 kb on - strandat 514.803 kb on + strandat 514.803 kb on + strandat 514.803 kb on + strandat 514.803 kb on + strandat 514.804 kb on - strandat 514.804 kb on - strandat 514.804 kb on - strandat 514.804 kb on - strandat 514.850 kb on - strandat 514.988 kb on + strand, within PFR28_00482at 514.988 kb on + strand, within PFR28_00482at 514.989 kb on - strand, within PFR28_00482at 514.989 kb on - strand, within PFR28_00482at 515.015 kb on + strand, within PFR28_00482at 515.016 kb on - strand, within PFR28_00482at 515.198 kb on + strand, within PFR28_00482at 515.198 kb on + strand, within PFR28_00482at 515.199 kb on - strand, within PFR28_00482at 515.199 kb on - strand, within PFR28_00482at 515.215 kb on + strand, within PFR28_00482at 515.223 kb on + strand, within PFR28_00482at 515.223 kb on + strand, within PFR28_00482at 515.224 kb on - strand, within PFR28_00482at 515.335 kb on + strand, within PFR28_00482at 515.588 kb on + strandat 515.588 kb on + strandat 515.588 kb on + strandat 515.588 kb on + strandat 515.588 kb on + strandat 515.588 kb on + strandat 515.589 kb on - strandat 515.589 kb on - strandat 515.589 kb on - strandat 515.589 kb on - strandat 515.793 kb on - strand, within PFR28_00483

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C) 10 mM
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513,074 + +0.7
513,074 + -0.5
513,074 + -1.3
513,075 - -0.3
513,075 - -1.3
513,099 - PFR28_00480 0.12 -3.1
513,099 - PFR28_00480 0.12 -2.1
513,099 - PFR28_00480 0.12 -0.6
513,099 - PFR28_00480 0.12 -0.5
513,099 - PFR28_00480 0.12 -0.7
513,099 - PFR28_00480 0.12 -0.9
513,469 + PFR28_00480 0.49 -0.9
513,470 - PFR28_00480 0.49 +1.6
513,488 + PFR28_00480 0.51 +0.4
513,489 - PFR28_00480 0.51 -0.0
513,489 - PFR28_00480 0.51 -2.2
513,489 - PFR28_00480 0.51 -0.3
513,526 + PFR28_00480 0.55 -1.0
513,526 + PFR28_00480 0.55 +0.8
513,526 + PFR28_00480 0.55 -0.1
513,526 + PFR28_00480 0.55 +0.3
513,526 + PFR28_00480 0.55 +0.3
513,526 + PFR28_00480 0.55 -0.5
513,526 + PFR28_00480 0.55 -0.1
513,526 + PFR28_00480 0.55 +1.5
513,526 + PFR28_00480 0.55 -1.2
513,527 - PFR28_00480 0.55 +0.5
513,527 - PFR28_00480 0.55 -3.5
513,527 - PFR28_00480 0.55 -0.5
513,527 - PFR28_00480 0.55 -1.5
513,527 - PFR28_00480 0.55 +0.0
513,593 + PFR28_00480 0.61 -0.6
513,593 + PFR28_00480 0.61 -0.6
513,889 + -1.3
513,889 + +0.7
513,894 + -0.4
513,894 + -1.0
513,910 - +0.7
514,796 - +0.9
514,803 + +0.3
514,803 + -0.5
514,803 + +0.6
514,803 + -0.5
514,804 - -0.8
514,804 - -0.9
514,804 - -0.3
514,804 - -1.3
514,850 - -0.0
514,988 + PFR28_00482 0.13 +0.9
514,988 + PFR28_00482 0.13 +0.2
514,989 - PFR28_00482 0.13 -0.3
514,989 - PFR28_00482 0.13 +0.3
515,015 + PFR28_00482 0.17 -0.8
515,016 - PFR28_00482 0.17 +0.5
515,198 + PFR28_00482 0.43 +0.3
515,198 + PFR28_00482 0.43 -0.0
515,199 - PFR28_00482 0.43 -1.6
515,199 - PFR28_00482 0.43 +0.2
515,215 + PFR28_00482 0.45 +1.0
515,223 + PFR28_00482 0.47 +0.7
515,223 + PFR28_00482 0.47 +0.7
515,224 - PFR28_00482 0.47 -1.5
515,335 + PFR28_00482 0.63 +0.3
515,588 + +0.1
515,588 + -0.3
515,588 + -2.4
515,588 + -0.4
515,588 + +0.0
515,588 + +0.6
515,589 - +0.5
515,589 - +0.3
515,589 - -1.0
515,589 - -0.9
515,793 - PFR28_00483 0.15 -0.8

Or see this region's nucleotide sequence