Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4651

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4649 and Echvi_4650 are separated by 72 nucleotidesEchvi_4650 and Echvi_4651 overlap by 14 nucleotidesEchvi_4651 and Echvi_4652 are separated by 144 nucleotides Echvi_4649: Echvi_4649 - Type III restriction enzyme, res subunit., at 5,565,698 to 5,567,629 _4649 Echvi_4650: Echvi_4650 - Uncharacterized protein conserved in bacteria, at 5,567,702 to 5,568,307 _4650 Echvi_4651: Echvi_4651 - hypothetical protein, at 5,568,294 to 5,568,743 _4651 Echvi_4652: Echvi_4652 - Cellulase M and related proteins, at 5,568,888 to 5,569,940 _4652 Position (kb) 5568 5569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5567.327 kb on - strand, within Echvi_4649at 5567.465 kb on + strandat 5567.465 kb on + strandat 5567.494 kb on - strandat 5567.595 kb on - strandat 5567.644 kb on - strandat 5567.661 kb on + strandat 5567.665 kb on + strandat 5567.724 kb on - strandat 5567.727 kb on + strandat 5567.727 kb on + strandat 5567.727 kb on + strandat 5567.728 kb on - strandat 5567.728 kb on - strandat 5567.906 kb on + strand, within Echvi_4650at 5567.907 kb on - strand, within Echvi_4650at 5567.949 kb on - strand, within Echvi_4650at 5567.976 kb on - strand, within Echvi_4650at 5567.990 kb on - strand, within Echvi_4650at 5567.992 kb on - strand, within Echvi_4650at 5568.015 kb on - strand, within Echvi_4650at 5568.060 kb on + strand, within Echvi_4650at 5568.142 kb on + strand, within Echvi_4650at 5568.154 kb on + strand, within Echvi_4650at 5568.154 kb on + strand, within Echvi_4650at 5568.154 kb on + strand, within Echvi_4650at 5568.157 kb on + strand, within Echvi_4650at 5568.224 kb on + strand, within Echvi_4650at 5568.282 kb on + strandat 5568.282 kb on + strandat 5568.283 kb on - strandat 5568.324 kb on + strandat 5568.324 kb on + strandat 5568.373 kb on - strand, within Echvi_4651at 5568.373 kb on - strand, within Echvi_4651at 5568.373 kb on - strand, within Echvi_4651at 5568.373 kb on - strand, within Echvi_4651at 5568.373 kb on - strand, within Echvi_4651at 5568.375 kb on - strand, within Echvi_4651at 5568.406 kb on - strand, within Echvi_4651at 5568.496 kb on + strand, within Echvi_4651at 5568.523 kb on + strand, within Echvi_4651at 5568.524 kb on - strand, within Echvi_4651at 5568.524 kb on - strand, within Echvi_4651at 5568.555 kb on + strand, within Echvi_4651at 5568.555 kb on + strand, within Echvi_4651at 5568.605 kb on + strand, within Echvi_4651at 5568.634 kb on + strand, within Echvi_4651at 5568.634 kb on + strand, within Echvi_4651at 5568.635 kb on - strand, within Echvi_4651at 5568.653 kb on + strand, within Echvi_4651at 5568.684 kb on + strand, within Echvi_4651at 5568.697 kb on - strand, within Echvi_4651at 5568.703 kb on - strandat 5568.703 kb on - strandat 5568.703 kb on - strandat 5568.703 kb on - strandat 5568.703 kb on - strandat 5568.746 kb on + strandat 5568.746 kb on + strandat 5568.747 kb on - strandat 5568.749 kb on + strandat 5568.750 kb on - strandat 5568.756 kb on + strandat 5568.756 kb on + strandat 5568.757 kb on - strandat 5568.765 kb on + strandat 5568.829 kb on + strandat 5568.933 kb on + strandat 5568.933 kb on + strandat 5568.934 kb on - strandat 5568.957 kb on - strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.965 kb on + strandat 5568.966 kb on - strandat 5568.966 kb on - strandat 5568.966 kb on - strandat 5568.966 kb on - strandat 5568.966 kb on - strandat 5568.992 kb on + strandat 5568.993 kb on - strandat 5569.011 kb on + strand, within Echvi_4652at 5569.148 kb on - strand, within Echvi_4652at 5569.173 kb on + strand, within Echvi_4652at 5569.318 kb on - strand, within Echvi_4652at 5569.345 kb on + strand, within Echvi_4652at 5569.354 kb on + strand, within Echvi_4652at 5569.354 kb on + strand, within Echvi_4652at 5569.354 kb on + strand, within Echvi_4652at 5569.355 kb on - strand, within Echvi_4652at 5569.355 kb on - strand, within Echvi_4652at 5569.424 kb on + strand, within Echvi_4652at 5569.527 kb on + strand, within Echvi_4652at 5569.528 kb on - strand, within Echvi_4652at 5569.528 kb on - strand, within Echvi_4652at 5569.548 kb on - strand, within Echvi_4652at 5569.608 kb on + strand, within Echvi_4652at 5569.609 kb on - strand, within Echvi_4652at 5569.679 kb on + strand, within Echvi_4652at 5569.679 kb on + strand, within Echvi_4652at 5569.679 kb on + strand, within Echvi_4652at 5569.680 kb on - strand, within Echvi_4652

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
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5,567,327 - Echvi_4649 0.84 -0.2
5,567,465 + -0.7
5,567,465 + +0.5
5,567,494 - -1.0
5,567,595 - -1.3
5,567,644 - +1.6
5,567,661 + +0.4
5,567,665 + +1.8
5,567,724 - -3.0
5,567,727 + +1.2
5,567,727 + +0.2
5,567,727 + -1.1
5,567,728 - +0.1
5,567,728 - +0.3
5,567,906 + Echvi_4650 0.34 -0.2
5,567,907 - Echvi_4650 0.34 -0.5
5,567,949 - Echvi_4650 0.41 -1.6
5,567,976 - Echvi_4650 0.45 +1.6
5,567,990 - Echvi_4650 0.48 -0.7
5,567,992 - Echvi_4650 0.48 +0.5
5,568,015 - Echvi_4650 0.52 +0.5
5,568,060 + Echvi_4650 0.59 +0.7
5,568,142 + Echvi_4650 0.73 +0.1
5,568,154 + Echvi_4650 0.75 +1.8
5,568,154 + Echvi_4650 0.75 -0.7
5,568,154 + Echvi_4650 0.75 +1.2
5,568,157 + Echvi_4650 0.75 +0.7
5,568,224 + Echvi_4650 0.86 +0.6
5,568,282 + +1.4
5,568,282 + -0.4
5,568,283 - -0.3
5,568,324 + -1.0
5,568,324 + -0.4
5,568,373 - Echvi_4651 0.18 +0.0
5,568,373 - Echvi_4651 0.18 -0.2
5,568,373 - Echvi_4651 0.18 +0.4
5,568,373 - Echvi_4651 0.18 -0.4
5,568,373 - Echvi_4651 0.18 -0.5
5,568,375 - Echvi_4651 0.18 +0.2
5,568,406 - Echvi_4651 0.25 -0.8
5,568,496 + Echvi_4651 0.45 -1.6
5,568,523 + Echvi_4651 0.51 -0.6
5,568,524 - Echvi_4651 0.51 -0.1
5,568,524 - Echvi_4651 0.51 +0.7
5,568,555 + Echvi_4651 0.58 -0.2
5,568,555 + Echvi_4651 0.58 -1.5
5,568,605 + Echvi_4651 0.69 -0.9
5,568,634 + Echvi_4651 0.76 -2.8
5,568,634 + Echvi_4651 0.76 -1.4
5,568,635 - Echvi_4651 0.76 -0.1
5,568,653 + Echvi_4651 0.80 -0.8
5,568,684 + Echvi_4651 0.87 +0.0
5,568,697 - Echvi_4651 0.90 -0.8
5,568,703 - +1.3
5,568,703 - +0.8
5,568,703 - +0.0
5,568,703 - -0.4
5,568,703 - +0.7
5,568,746 + -0.6
5,568,746 + +1.4
5,568,747 - -1.6
5,568,749 + +0.8
5,568,750 - +0.2
5,568,756 + -0.8
5,568,756 + -0.9
5,568,757 - +1.5
5,568,765 + +0.0
5,568,829 + -0.0
5,568,933 + -2.1
5,568,933 + +1.1
5,568,934 - +1.4
5,568,957 - -1.7
5,568,965 + -0.2
5,568,965 + -0.2
5,568,965 + -0.3
5,568,965 + -0.3
5,568,965 + -1.0
5,568,965 + -0.4
5,568,965 + +0.2
5,568,965 + +0.2
5,568,965 + -1.5
5,568,966 - +1.1
5,568,966 - +2.8
5,568,966 - -0.6
5,568,966 - -0.3
5,568,966 - -1.3
5,568,992 + +0.0
5,568,993 - +0.6
5,569,011 + Echvi_4652 0.12 -1.8
5,569,148 - Echvi_4652 0.25 +0.6
5,569,173 + Echvi_4652 0.27 -1.1
5,569,318 - Echvi_4652 0.41 -2.9
5,569,345 + Echvi_4652 0.43 -1.3
5,569,354 + Echvi_4652 0.44 +0.9
5,569,354 + Echvi_4652 0.44 -0.5
5,569,354 + Echvi_4652 0.44 +0.8
5,569,355 - Echvi_4652 0.44 +1.8
5,569,355 - Echvi_4652 0.44 -0.8
5,569,424 + Echvi_4652 0.51 -0.3
5,569,527 + Echvi_4652 0.61 +0.1
5,569,528 - Echvi_4652 0.61 -0.3
5,569,528 - Echvi_4652 0.61 +0.3
5,569,548 - Echvi_4652 0.63 -1.8
5,569,608 + Echvi_4652 0.68 +0.2
5,569,609 - Echvi_4652 0.68 +0.8
5,569,679 + Echvi_4652 0.75 +0.0
5,569,679 + Echvi_4652 0.75 +0.6
5,569,679 + Echvi_4652 0.75 -0.4
5,569,680 - Echvi_4652 0.75 +0.5

Or see this region's nucleotide sequence