Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3982

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3980 and Echvi_3981 are separated by 60 nucleotidesEchvi_3981 and Echvi_3982 are separated by 224 nucleotidesEchvi_3982 and Echvi_3983 are separated by 116 nucleotidesEchvi_3983 and Echvi_3984 are separated by 6 nucleotides Echvi_3980: Echvi_3980 - Beta-lactamase class A, at 4,768,501 to 4,769,412 _3980 Echvi_3981: Echvi_3981 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 4,769,473 to 4,770,084 _3981 Echvi_3982: Echvi_3982 - Alpha-L-rhamnosidase N-terminal domain./Bacterial alpha-L-rhamnosidase., at 4,770,309 to 4,772,963 _3982 Echvi_3983: Echvi_3983 - Transcriptional regulator/sugar kinase, at 4,773,080 to 4,773,955 _3983 Echvi_3984: Echvi_3984 - alpha-1,2-mannosidase, putative, at 4,773,962 to 4,776,124 _3984 Position (kb) 4770 4771 4772 4773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4769.320 kb on - strand, within Echvi_3980at 4769.381 kb on - strandat 4769.381 kb on - strandat 4769.399 kb on + strandat 4769.456 kb on + strandat 4769.456 kb on + strandat 4769.479 kb on + strandat 4769.480 kb on - strandat 4769.502 kb on + strandat 4769.503 kb on - strandat 4769.562 kb on + strand, within Echvi_3981at 4769.564 kb on + strand, within Echvi_3981at 4769.565 kb on - strand, within Echvi_3981at 4769.669 kb on - strand, within Echvi_3981at 4769.679 kb on + strand, within Echvi_3981at 4769.679 kb on + strand, within Echvi_3981at 4769.680 kb on - strand, within Echvi_3981at 4769.680 kb on - strand, within Echvi_3981at 4769.717 kb on + strand, within Echvi_3981at 4769.772 kb on - strand, within Echvi_3981at 4769.788 kb on - strand, within Echvi_3981at 4769.846 kb on + strand, within Echvi_3981at 4769.893 kb on + strand, within Echvi_3981at 4769.897 kb on + strand, within Echvi_3981at 4769.897 kb on + strand, within Echvi_3981at 4769.959 kb on + strand, within Echvi_3981at 4769.966 kb on + strand, within Echvi_3981at 4769.982 kb on - strand, within Echvi_3981at 4769.990 kb on + strand, within Echvi_3981at 4769.990 kb on + strand, within Echvi_3981at 4769.991 kb on - strand, within Echvi_3981at 4769.999 kb on + strand, within Echvi_3981at 4769.999 kb on + strand, within Echvi_3981at 4769.999 kb on + strand, within Echvi_3981at 4770.000 kb on - strand, within Echvi_3981at 4770.008 kb on - strand, within Echvi_3981at 4770.072 kb on + strandat 4770.094 kb on + strandat 4770.095 kb on - strandat 4770.095 kb on - strandat 4770.194 kb on + strandat 4770.369 kb on + strandat 4770.370 kb on - strandat 4770.370 kb on - strandat 4770.370 kb on - strandat 4770.432 kb on - strandat 4770.444 kb on - strandat 4770.444 kb on - strandat 4770.455 kb on + strandat 4770.456 kb on - strandat 4770.461 kb on + strandat 4770.463 kb on + strandat 4770.463 kb on + strandat 4770.578 kb on + strand, within Echvi_3982at 4770.578 kb on + strand, within Echvi_3982at 4770.629 kb on + strand, within Echvi_3982at 4770.629 kb on + strand, within Echvi_3982at 4770.629 kb on + strand, within Echvi_3982at 4770.630 kb on - strand, within Echvi_3982at 4770.630 kb on - strand, within Echvi_3982at 4770.630 kb on - strand, within Echvi_3982at 4770.630 kb on - strand, within Echvi_3982at 4770.630 kb on - strand, within Echvi_3982at 4770.630 kb on - strand, within Echvi_3982at 4770.631 kb on + strand, within Echvi_3982at 4770.631 kb on + strand, within Echvi_3982at 4770.631 kb on + strand, within Echvi_3982at 4770.631 kb on + strand, within Echvi_3982at 4770.631 kb on + strand, within Echvi_3982at 4770.631 kb on + strand, within Echvi_3982at 4770.631 kb on + strand, within Echvi_3982at 4770.632 kb on - strand, within Echvi_3982at 4770.632 kb on - strand, within Echvi_3982at 4770.633 kb on + strand, within Echvi_3982at 4770.633 kb on + strand, within Echvi_3982at 4770.728 kb on + strand, within Echvi_3982at 4770.728 kb on + strand, within Echvi_3982at 4770.728 kb on + strand, within Echvi_3982at 4770.732 kb on + strand, within Echvi_3982at 4770.733 kb on - strand, within Echvi_3982at 4770.772 kb on - strand, within Echvi_3982at 4770.776 kb on + strand, within Echvi_3982at 4770.776 kb on + strand, within Echvi_3982at 4770.776 kb on + strand, within Echvi_3982at 4770.776 kb on + strand, within Echvi_3982at 4770.776 kb on + strand, within Echvi_3982at 4770.777 kb on - strand, within Echvi_3982at 4770.778 kb on + strand, within Echvi_3982at 4770.778 kb on + strand, within Echvi_3982at 4770.800 kb on + strand, within Echvi_3982at 4770.906 kb on + strand, within Echvi_3982at 4770.907 kb on - strand, within Echvi_3982at 4770.970 kb on + strand, within Echvi_3982at 4771.040 kb on - strand, within Echvi_3982at 4771.068 kb on + strand, within Echvi_3982at 4771.069 kb on - strand, within Echvi_3982at 4771.069 kb on - strand, within Echvi_3982at 4771.069 kb on - strand, within Echvi_3982at 4771.104 kb on - strand, within Echvi_3982at 4771.108 kb on + strand, within Echvi_3982at 4771.111 kb on + strand, within Echvi_3982at 4771.111 kb on + strand, within Echvi_3982at 4771.112 kb on - strand, within Echvi_3982at 4771.237 kb on + strand, within Echvi_3982at 4771.237 kb on + strand, within Echvi_3982at 4771.238 kb on - strand, within Echvi_3982at 4771.276 kb on + strand, within Echvi_3982at 4771.291 kb on - strand, within Echvi_3982at 4771.291 kb on - strand, within Echvi_3982at 4771.304 kb on + strand, within Echvi_3982at 4771.304 kb on + strand, within Echvi_3982at 4771.304 kb on + strand, within Echvi_3982at 4771.305 kb on - strand, within Echvi_3982at 4771.445 kb on - strand, within Echvi_3982at 4771.447 kb on - strand, within Echvi_3982at 4771.515 kb on - strand, within Echvi_3982at 4771.541 kb on - strand, within Echvi_3982at 4771.572 kb on + strand, within Echvi_3982at 4771.572 kb on + strand, within Echvi_3982at 4771.572 kb on + strand, within Echvi_3982at 4771.572 kb on + strand, within Echvi_3982at 4771.573 kb on - strand, within Echvi_3982at 4771.631 kb on - strand, within Echvi_3982at 4771.631 kb on - strand, within Echvi_3982at 4771.661 kb on + strand, within Echvi_3982at 4771.662 kb on - strand, within Echvi_3982at 4771.702 kb on + strand, within Echvi_3982at 4771.750 kb on + strand, within Echvi_3982at 4771.750 kb on + strand, within Echvi_3982at 4771.952 kb on + strand, within Echvi_3982at 4771.952 kb on + strand, within Echvi_3982at 4771.952 kb on + strand, within Echvi_3982at 4772.125 kb on + strand, within Echvi_3982at 4772.125 kb on + strand, within Echvi_3982at 4772.132 kb on + strand, within Echvi_3982at 4772.151 kb on + strand, within Echvi_3982at 4772.152 kb on - strand, within Echvi_3982at 4772.210 kb on + strand, within Echvi_3982at 4772.211 kb on - strand, within Echvi_3982at 4772.280 kb on - strand, within Echvi_3982at 4772.293 kb on + strand, within Echvi_3982at 4772.294 kb on - strand, within Echvi_3982at 4772.352 kb on + strand, within Echvi_3982at 4772.353 kb on - strand, within Echvi_3982at 4772.368 kb on + strand, within Echvi_3982at 4772.368 kb on + strand, within Echvi_3982at 4772.368 kb on + strand, within Echvi_3982at 4772.368 kb on + strand, within Echvi_3982at 4772.369 kb on - strand, within Echvi_3982at 4772.430 kb on - strand, within Echvi_3982at 4772.443 kb on - strand, within Echvi_3982at 4772.449 kb on + strand, within Echvi_3982at 4772.470 kb on + strand, within Echvi_3982at 4772.471 kb on - strand, within Echvi_3982at 4772.471 kb on - strand, within Echvi_3982at 4772.535 kb on + strand, within Echvi_3982at 4772.565 kb on + strand, within Echvi_3982at 4772.688 kb on + strand, within Echvi_3982at 4772.705 kb on - strandat 4772.705 kb on - strandat 4772.709 kb on + strandat 4772.710 kb on - strandat 4772.779 kb on - strandat 4772.779 kb on - strandat 4772.780 kb on + strandat 4772.868 kb on + strandat 4772.869 kb on - strandat 4772.876 kb on - strandat 4772.886 kb on - strandat 4772.913 kb on - strandat 4773.072 kb on - strandat 4773.075 kb on - strandat 4773.090 kb on + strandat 4773.091 kb on - strandat 4773.135 kb on - strandat 4773.136 kb on + strandat 4773.200 kb on + strand, within Echvi_3983at 4773.220 kb on + strand, within Echvi_3983at 4773.220 kb on + strand, within Echvi_3983at 4773.220 kb on + strand, within Echvi_3983at 4773.308 kb on + strand, within Echvi_3983at 4773.309 kb on - strand, within Echvi_3983at 4773.354 kb on - strand, within Echvi_3983at 4773.388 kb on - strand, within Echvi_3983at 4773.490 kb on - strand, within Echvi_3983at 4773.572 kb on + strand, within Echvi_3983at 4773.573 kb on - strand, within Echvi_3983at 4773.573 kb on - strand, within Echvi_3983at 4773.575 kb on + strand, within Echvi_3983at 4773.576 kb on - strand, within Echvi_3983at 4773.648 kb on - strand, within Echvi_3983at 4773.672 kb on + strand, within Echvi_3983at 4773.672 kb on + strand, within Echvi_3983at 4773.672 kb on + strand, within Echvi_3983at 4773.714 kb on + strand, within Echvi_3983at 4773.754 kb on + strand, within Echvi_3983at 4773.755 kb on - strand, within Echvi_3983at 4773.863 kb on - strand, within Echvi_3983at 4773.917 kb on + strandat 4773.918 kb on - strandat 4773.933 kb on - strandat 4773.963 kb on + strandat 4773.963 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
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4,769,320 - Echvi_3980 0.90 +0.7
4,769,381 - -0.1
4,769,381 - +0.5
4,769,399 + -0.5
4,769,456 + -0.9
4,769,456 + -0.6
4,769,479 + -0.3
4,769,480 - -0.2
4,769,502 + -0.2
4,769,503 - -0.9
4,769,562 + Echvi_3981 0.15 +0.2
4,769,564 + Echvi_3981 0.15 -0.9
4,769,565 - Echvi_3981 0.15 -0.7
4,769,669 - Echvi_3981 0.32 -0.0
4,769,679 + Echvi_3981 0.34 +0.7
4,769,679 + Echvi_3981 0.34 -2.2
4,769,680 - Echvi_3981 0.34 +1.1
4,769,680 - Echvi_3981 0.34 +0.0
4,769,717 + Echvi_3981 0.40 +2.0
4,769,772 - Echvi_3981 0.49 +0.6
4,769,788 - Echvi_3981 0.51 +0.1
4,769,846 + Echvi_3981 0.61 +1.2
4,769,893 + Echvi_3981 0.69 -0.1
4,769,897 + Echvi_3981 0.69 +0.1
4,769,897 + Echvi_3981 0.69 +2.0
4,769,959 + Echvi_3981 0.79 -0.9
4,769,966 + Echvi_3981 0.81 -0.3
4,769,982 - Echvi_3981 0.83 +0.2
4,769,990 + Echvi_3981 0.84 -0.3
4,769,990 + Echvi_3981 0.84 -1.1
4,769,991 - Echvi_3981 0.85 +0.7
4,769,999 + Echvi_3981 0.86 +1.1
4,769,999 + Echvi_3981 0.86 -0.1
4,769,999 + Echvi_3981 0.86 -1.3
4,770,000 - Echvi_3981 0.86 -0.1
4,770,008 - Echvi_3981 0.87 -0.3
4,770,072 + -0.3
4,770,094 + -0.4
4,770,095 - +0.4
4,770,095 - -0.6
4,770,194 + -1.0
4,770,369 + +0.3
4,770,370 - +0.7
4,770,370 - -0.9
4,770,370 - +1.4
4,770,432 - -0.0
4,770,444 - -1.0
4,770,444 - -1.2
4,770,455 + +0.2
4,770,456 - +0.5
4,770,461 + -0.7
4,770,463 + +0.1
4,770,463 + -0.1
4,770,578 + Echvi_3982 0.10 -0.7
4,770,578 + Echvi_3982 0.10 +0.2
4,770,629 + Echvi_3982 0.12 -0.6
4,770,629 + Echvi_3982 0.12 +0.5
4,770,629 + Echvi_3982 0.12 +0.8
4,770,630 - Echvi_3982 0.12 -0.7
4,770,630 - Echvi_3982 0.12 +0.9
4,770,630 - Echvi_3982 0.12 -0.6
4,770,630 - Echvi_3982 0.12 -2.9
4,770,630 - Echvi_3982 0.12 -0.7
4,770,630 - Echvi_3982 0.12 -0.3
4,770,631 + Echvi_3982 0.12 -1.1
4,770,631 + Echvi_3982 0.12 +0.5
4,770,631 + Echvi_3982 0.12 -0.3
4,770,631 + Echvi_3982 0.12 +1.1
4,770,631 + Echvi_3982 0.12 -0.4
4,770,631 + Echvi_3982 0.12 -0.7
4,770,631 + Echvi_3982 0.12 -0.5
4,770,632 - Echvi_3982 0.12 +0.4
4,770,632 - Echvi_3982 0.12 -1.3
4,770,633 + Echvi_3982 0.12 -0.3
4,770,633 + Echvi_3982 0.12 +0.4
4,770,728 + Echvi_3982 0.16 -1.8
4,770,728 + Echvi_3982 0.16 -0.0
4,770,728 + Echvi_3982 0.16 +0.1
4,770,732 + Echvi_3982 0.16 +2.2
4,770,733 - Echvi_3982 0.16 -0.0
4,770,772 - Echvi_3982 0.17 -1.3
4,770,776 + Echvi_3982 0.18 +0.3
4,770,776 + Echvi_3982 0.18 -0.9
4,770,776 + Echvi_3982 0.18 -0.5
4,770,776 + Echvi_3982 0.18 -0.8
4,770,776 + Echvi_3982 0.18 +0.6
4,770,777 - Echvi_3982 0.18 -1.8
4,770,778 + Echvi_3982 0.18 -0.6
4,770,778 + Echvi_3982 0.18 +0.7
4,770,800 + Echvi_3982 0.18 -0.4
4,770,906 + Echvi_3982 0.22 +0.1
4,770,907 - Echvi_3982 0.23 -0.9
4,770,970 + Echvi_3982 0.25 +1.3
4,771,040 - Echvi_3982 0.28 +0.7
4,771,068 + Echvi_3982 0.29 -1.8
4,771,069 - Echvi_3982 0.29 +0.6
4,771,069 - Echvi_3982 0.29 -0.0
4,771,069 - Echvi_3982 0.29 -0.7
4,771,104 - Echvi_3982 0.30 -2.8
4,771,108 + Echvi_3982 0.30 -1.9
4,771,111 + Echvi_3982 0.30 -0.5
4,771,111 + Echvi_3982 0.30 -0.3
4,771,112 - Echvi_3982 0.30 -0.2
4,771,237 + Echvi_3982 0.35 -0.6
4,771,237 + Echvi_3982 0.35 +0.3
4,771,238 - Echvi_3982 0.35 -0.2
4,771,276 + Echvi_3982 0.36 +0.8
4,771,291 - Echvi_3982 0.37 +1.7
4,771,291 - Echvi_3982 0.37 -2.9
4,771,304 + Echvi_3982 0.37 +0.9
4,771,304 + Echvi_3982 0.37 -0.3
4,771,304 + Echvi_3982 0.37 -1.3
4,771,305 - Echvi_3982 0.38 -1.3
4,771,445 - Echvi_3982 0.43 -0.2
4,771,447 - Echvi_3982 0.43 -0.9
4,771,515 - Echvi_3982 0.45 +0.1
4,771,541 - Echvi_3982 0.46 -1.7
4,771,572 + Echvi_3982 0.48 -0.1
4,771,572 + Echvi_3982 0.48 -0.4
4,771,572 + Echvi_3982 0.48 -1.1
4,771,572 + Echvi_3982 0.48 +1.0
4,771,573 - Echvi_3982 0.48 -0.3
4,771,631 - Echvi_3982 0.50 -0.9
4,771,631 - Echvi_3982 0.50 +4.0
4,771,661 + Echvi_3982 0.51 -0.5
4,771,662 - Echvi_3982 0.51 -0.0
4,771,702 + Echvi_3982 0.52 +0.0
4,771,750 + Echvi_3982 0.54 +0.0
4,771,750 + Echvi_3982 0.54 +1.7
4,771,952 + Echvi_3982 0.62 +0.4
4,771,952 + Echvi_3982 0.62 +1.1
4,771,952 + Echvi_3982 0.62 -1.5
4,772,125 + Echvi_3982 0.68 +0.4
4,772,125 + Echvi_3982 0.68 -0.7
4,772,132 + Echvi_3982 0.69 -0.1
4,772,151 + Echvi_3982 0.69 -0.4
4,772,152 - Echvi_3982 0.69 +0.7
4,772,210 + Echvi_3982 0.72 +0.6
4,772,211 - Echvi_3982 0.72 +1.9
4,772,280 - Echvi_3982 0.74 -1.1
4,772,293 + Echvi_3982 0.75 -0.2
4,772,294 - Echvi_3982 0.75 -1.4
4,772,352 + Echvi_3982 0.77 -1.0
4,772,353 - Echvi_3982 0.77 -0.9
4,772,368 + Echvi_3982 0.78 -1.2
4,772,368 + Echvi_3982 0.78 +1.4
4,772,368 + Echvi_3982 0.78 +0.1
4,772,368 + Echvi_3982 0.78 -0.6
4,772,369 - Echvi_3982 0.78 +0.3
4,772,430 - Echvi_3982 0.80 -0.2
4,772,443 - Echvi_3982 0.80 -0.1
4,772,449 + Echvi_3982 0.81 -1.8
4,772,470 + Echvi_3982 0.81 +1.1
4,772,471 - Echvi_3982 0.81 +0.7
4,772,471 - Echvi_3982 0.81 +0.4
4,772,535 + Echvi_3982 0.84 +0.4
4,772,565 + Echvi_3982 0.85 -0.2
4,772,688 + Echvi_3982 0.90 -0.4
4,772,705 - -0.5
4,772,705 - +0.6
4,772,709 + +1.2
4,772,710 - -0.8
4,772,779 - -0.7
4,772,779 - +1.0
4,772,780 + -1.1
4,772,868 + -1.5
4,772,869 - +0.2
4,772,876 - +1.2
4,772,886 - +0.4
4,772,913 - -0.3
4,773,072 - -0.2
4,773,075 - +0.3
4,773,090 + +0.2
4,773,091 - -1.1
4,773,135 - +0.9
4,773,136 + +0.6
4,773,200 + Echvi_3983 0.14 +1.1
4,773,220 + Echvi_3983 0.16 +1.2
4,773,220 + Echvi_3983 0.16 +0.5
4,773,220 + Echvi_3983 0.16 +0.1
4,773,308 + Echvi_3983 0.26 -0.3
4,773,309 - Echvi_3983 0.26 +0.9
4,773,354 - Echvi_3983 0.31 -0.1
4,773,388 - Echvi_3983 0.35 +0.3
4,773,490 - Echvi_3983 0.47 -0.2
4,773,572 + Echvi_3983 0.56 -0.5
4,773,573 - Echvi_3983 0.56 -1.3
4,773,573 - Echvi_3983 0.56 +0.1
4,773,575 + Echvi_3983 0.57 +1.0
4,773,576 - Echvi_3983 0.57 +0.4
4,773,648 - Echvi_3983 0.65 -0.1
4,773,672 + Echvi_3983 0.68 +1.1
4,773,672 + Echvi_3983 0.68 +1.1
4,773,672 + Echvi_3983 0.68 -0.0
4,773,714 + Echvi_3983 0.72 -0.7
4,773,754 + Echvi_3983 0.77 -0.5
4,773,755 - Echvi_3983 0.77 -0.3
4,773,863 - Echvi_3983 0.89 +0.2
4,773,917 + -1.3
4,773,918 - +0.4
4,773,933 - -0.1
4,773,963 + -1.5
4,773,963 + +0.1

Or see this region's nucleotide sequence