Experiment: m.b. Dimethyl Sulfoxide 8 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2836 and Echvi_2837 are separated by 48 nucleotides Echvi_2837 and Echvi_2838 overlap by 4 nucleotides Echvi_2838 and Echvi_2839 are separated by 12 nucleotides Echvi_2839 and Echvi_2840 are separated by 55 nucleotides
Echvi_2836: Echvi_2836 - hypothetical protein, at 3,397,361 to 3,398,230
_2836
Echvi_2837: Echvi_2837 - hypothetical protein, at 3,398,279 to 3,399,187
_2837
Echvi_2838: Echvi_2838 - Cytosine/adenosine deaminases, at 3,399,184 to 3,399,621
_2838
Echvi_2839: Echvi_2839 - hypothetical protein, at 3,399,634 to 3,399,825
_2839
Echvi_2840: Echvi_2840 - PAS domain S-box, at 3,399,881 to 3,401,653
_2840
Position (kb)
3398
3399
3400 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3397.283 kb on + strand at 3397.283 kb on + strand at 3397.300 kb on + strand at 3397.301 kb on - strand at 3397.331 kb on + strand at 3397.357 kb on + strand at 3397.358 kb on - strand at 3397.363 kb on - strand at 3397.372 kb on + strand at 3397.373 kb on - strand at 3397.373 kb on - strand at 3397.373 kb on - strand at 3397.384 kb on + strand at 3397.384 kb on + strand at 3397.389 kb on - strand at 3397.418 kb on + strand at 3397.517 kb on + strand, within Echvi_2836 at 3397.539 kb on + strand, within Echvi_2836 at 3397.540 kb on - strand, within Echvi_2836 at 3397.550 kb on + strand, within Echvi_2836 at 3397.551 kb on - strand, within Echvi_2836 at 3397.599 kb on + strand, within Echvi_2836 at 3397.600 kb on - strand, within Echvi_2836 at 3397.724 kb on + strand, within Echvi_2836 at 3397.725 kb on - strand, within Echvi_2836 at 3397.790 kb on + strand, within Echvi_2836 at 3397.790 kb on + strand, within Echvi_2836 at 3397.866 kb on + strand, within Echvi_2836 at 3397.866 kb on + strand, within Echvi_2836 at 3397.933 kb on + strand, within Echvi_2836 at 3397.951 kb on + strand, within Echvi_2836 at 3397.976 kb on - strand, within Echvi_2836 at 3398.029 kb on + strand, within Echvi_2836 at 3398.030 kb on - strand, within Echvi_2836 at 3398.137 kb on + strand, within Echvi_2836 at 3398.281 kb on - strand at 3398.340 kb on - strand at 3398.377 kb on - strand, within Echvi_2837 at 3398.377 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.383 kb on + strand, within Echvi_2837 at 3398.512 kb on - strand, within Echvi_2837 at 3398.539 kb on + strand, within Echvi_2837 at 3398.540 kb on - strand, within Echvi_2837 at 3398.551 kb on - strand, within Echvi_2837 at 3398.652 kb on + strand, within Echvi_2837 at 3398.736 kb on + strand, within Echvi_2837 at 3398.760 kb on + strand, within Echvi_2837 at 3398.761 kb on - strand, within Echvi_2837 at 3398.762 kb on + strand, within Echvi_2837 at 3398.847 kb on + strand, within Echvi_2837 at 3398.848 kb on - strand, within Echvi_2837 at 3398.848 kb on - strand, within Echvi_2837 at 3398.849 kb on + strand, within Echvi_2837 at 3398.868 kb on - strand, within Echvi_2837 at 3398.913 kb on + strand, within Echvi_2837 at 3398.913 kb on + strand, within Echvi_2837 at 3398.914 kb on - strand, within Echvi_2837 at 3398.917 kb on + strand, within Echvi_2837 at 3398.951 kb on + strand, within Echvi_2837 at 3398.951 kb on + strand, within Echvi_2837 at 3399.155 kb on - strand at 3399.299 kb on - strand, within Echvi_2838 at 3399.357 kb on - strand, within Echvi_2838 at 3399.375 kb on + strand, within Echvi_2838 at 3399.483 kb on + strand, within Echvi_2838 at 3399.484 kb on - strand, within Echvi_2838 at 3399.484 kb on - strand, within Echvi_2838 at 3399.507 kb on + strand, within Echvi_2838 at 3399.607 kb on + strand at 3399.607 kb on + strand at 3399.608 kb on - strand at 3399.622 kb on - strand at 3399.631 kb on - strand at 3399.633 kb on - strand at 3399.636 kb on - strand at 3399.636 kb on - strand at 3399.667 kb on + strand, within Echvi_2839 at 3399.667 kb on + strand, within Echvi_2839 at 3399.667 kb on + strand, within Echvi_2839 at 3399.794 kb on - strand, within Echvi_2839 at 3399.815 kb on - strand at 3399.815 kb on - strand at 3399.820 kb on - strand at 3399.848 kb on - strand at 3399.848 kb on - strand at 3399.850 kb on + strand at 3399.856 kb on + strand at 3399.902 kb on + strand at 3399.974 kb on - strand at 3399.981 kb on + strand at 3400.072 kb on - strand, within Echvi_2840 at 3400.092 kb on - strand, within Echvi_2840 at 3400.092 kb on - strand, within Echvi_2840 at 3400.103 kb on - strand, within Echvi_2840 at 3400.108 kb on - strand, within Echvi_2840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol% remove 3,397,283 + -0.1 3,397,283 + +0.3 3,397,300 + -0.2 3,397,301 - -0.1 3,397,331 + +0.8 3,397,357 + +0.9 3,397,358 - +0.8 3,397,363 - +0.6 3,397,372 + +3.3 3,397,373 - +0.7 3,397,373 - +0.8 3,397,373 - -0.1 3,397,384 + +0.3 3,397,384 + +2.0 3,397,389 - +0.6 3,397,418 + -2.4 3,397,517 + Echvi_2836 0.18 -0.8 3,397,539 + Echvi_2836 0.20 -0.2 3,397,540 - Echvi_2836 0.21 -1.1 3,397,550 + Echvi_2836 0.22 +1.4 3,397,551 - Echvi_2836 0.22 +1.7 3,397,599 + Echvi_2836 0.27 -0.2 3,397,600 - Echvi_2836 0.27 -0.1 3,397,724 + Echvi_2836 0.42 -0.4 3,397,725 - Echvi_2836 0.42 -0.7 3,397,790 + Echvi_2836 0.49 -1.8 3,397,790 + Echvi_2836 0.49 -0.0 3,397,866 + Echvi_2836 0.58 -0.9 3,397,866 + Echvi_2836 0.58 -0.1 3,397,933 + Echvi_2836 0.66 -0.4 3,397,951 + Echvi_2836 0.68 -0.1 3,397,976 - Echvi_2836 0.71 -0.9 3,398,029 + Echvi_2836 0.77 -0.1 3,398,030 - Echvi_2836 0.77 +0.1 3,398,137 + Echvi_2836 0.89 -0.9 3,398,281 - -0.4 3,398,340 - +0.7 3,398,377 - Echvi_2837 0.11 -0.0 3,398,377 - Echvi_2837 0.11 -0.2 3,398,382 - Echvi_2837 0.11 -0.5 3,398,382 - Echvi_2837 0.11 +0.5 3,398,382 - Echvi_2837 0.11 +0.6 3,398,382 - Echvi_2837 0.11 -1.5 3,398,382 - Echvi_2837 0.11 -1.1 3,398,383 + Echvi_2837 0.11 -1.0 3,398,512 - Echvi_2837 0.26 -0.7 3,398,539 + Echvi_2837 0.29 +0.4 3,398,540 - Echvi_2837 0.29 -0.6 3,398,551 - Echvi_2837 0.30 -0.8 3,398,652 + Echvi_2837 0.41 +1.3 3,398,736 + Echvi_2837 0.50 +0.3 3,398,760 + Echvi_2837 0.53 -2.6 3,398,761 - Echvi_2837 0.53 -0.6 3,398,762 + Echvi_2837 0.53 -1.7 3,398,847 + Echvi_2837 0.62 -2.1 3,398,848 - Echvi_2837 0.63 -1.6 3,398,848 - Echvi_2837 0.63 -0.6 3,398,849 + Echvi_2837 0.63 +0.1 3,398,868 - Echvi_2837 0.65 +0.1 3,398,913 + Echvi_2837 0.70 +1.2 3,398,913 + Echvi_2837 0.70 +0.0 3,398,914 - Echvi_2837 0.70 -0.3 3,398,917 + Echvi_2837 0.70 -1.1 3,398,951 + Echvi_2837 0.74 -0.5 3,398,951 + Echvi_2837 0.74 +0.0 3,399,155 - +0.4 3,399,299 - Echvi_2838 0.26 -0.5 3,399,357 - Echvi_2838 0.39 +0.1 3,399,375 + Echvi_2838 0.44 +1.1 3,399,483 + Echvi_2838 0.68 -0.0 3,399,484 - Echvi_2838 0.68 -0.3 3,399,484 - Echvi_2838 0.68 -0.9 3,399,507 + Echvi_2838 0.74 -1.1 3,399,607 + -0.7 3,399,607 + -0.6 3,399,608 - +0.4 3,399,622 - +0.2 3,399,631 - +3.3 3,399,633 - +0.0 3,399,636 - +0.4 3,399,636 - -0.8 3,399,667 + Echvi_2839 0.17 +0.6 3,399,667 + Echvi_2839 0.17 -0.3 3,399,667 + Echvi_2839 0.17 -0.2 3,399,794 - Echvi_2839 0.83 -0.4 3,399,815 - -0.9 3,399,815 - +0.4 3,399,820 - -0.1 3,399,848 - -0.4 3,399,848 - +0.5 3,399,850 + +0.8 3,399,856 + -0.3 3,399,902 + -0.4 3,399,974 - -0.9 3,399,981 + -0.3 3,400,072 - Echvi_2840 0.11 +0.5 3,400,092 - Echvi_2840 0.12 +1.1 3,400,092 - Echvi_2840 0.12 +0.1 3,400,103 - Echvi_2840 0.13 +0.1 3,400,108 - Echvi_2840 0.13 +2.4
Or see this region's nucleotide sequence