Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1629

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1626 and Echvi_1627 are separated by 171 nucleotidesEchvi_1627 and Echvi_1628 overlap by 20 nucleotidesEchvi_1628 and Echvi_1629 are separated by 3 nucleotidesEchvi_1629 and Echvi_1630 are separated by 120 nucleotides Echvi_1626: Echvi_1626 - branched-chain amino acid aminotransferase, group II, at 1,878,768 to 1,879,835 _1626 Echvi_1627: Echvi_1627 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, at 1,880,007 to 1,880,546 _1627 Echvi_1628: Echvi_1628 - hypothetical protein, at 1,880,527 to 1,880,796 _1628 Echvi_1629: Echvi_1629 - Protease subunit of ATP-dependent Clp proteases, at 1,880,800 to 1,881,459 _1629 Echvi_1630: Echvi_1630 - Lysophospholipase L1 and related esterases, at 1,881,580 to 1,883,082 _1630 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -2 -1 0 1 2at 1879.872 kb on + strandat 1879.921 kb on + strandat 1879.921 kb on + strandat 1879.988 kb on + strandat 1879.988 kb on + strandat 1879.989 kb on - strandat 1879.989 kb on - strandat 1879.989 kb on - strandat 1880.007 kb on - strandat 1880.061 kb on + strand, within Echvi_1627at 1880.061 kb on + strand, within Echvi_1627at 1880.062 kb on - strand, within Echvi_1627at 1880.062 kb on - strand, within Echvi_1627at 1880.062 kb on - strand, within Echvi_1627at 1880.062 kb on - strand, within Echvi_1627at 1880.062 kb on - strand, within Echvi_1627at 1880.065 kb on - strand, within Echvi_1627at 1880.157 kb on + strand, within Echvi_1627at 1880.158 kb on - strand, within Echvi_1627at 1880.161 kb on - strand, within Echvi_1627at 1880.161 kb on - strand, within Echvi_1627at 1880.236 kb on - strand, within Echvi_1627at 1880.273 kb on - strand, within Echvi_1627at 1880.273 kb on - strand, within Echvi_1627at 1880.341 kb on + strand, within Echvi_1627at 1880.342 kb on - strand, within Echvi_1627at 1880.342 kb on - strand, within Echvi_1627at 1880.342 kb on - strand, within Echvi_1627at 1880.342 kb on - strand, within Echvi_1627at 1880.386 kb on + strand, within Echvi_1627at 1880.387 kb on - strand, within Echvi_1627at 1880.387 kb on - strand, within Echvi_1627at 1880.401 kb on - strand, within Echvi_1627at 1880.495 kb on - strandat 1880.506 kb on + strandat 1880.507 kb on - strandat 1880.541 kb on - strandat 1880.604 kb on + strand, within Echvi_1628at 1880.604 kb on + strand, within Echvi_1628at 1880.604 kb on + strand, within Echvi_1628at 1880.604 kb on + strand, within Echvi_1628at 1880.605 kb on - strand, within Echvi_1628at 1880.668 kb on + strand, within Echvi_1628at 1880.763 kb on + strand, within Echvi_1628at 1880.763 kb on + strand, within Echvi_1628at 1880.787 kb on + strandat 1880.795 kb on - strandat 1880.960 kb on + strand, within Echvi_1629at 1880.961 kb on - strand, within Echvi_1629at 1880.961 kb on - strand, within Echvi_1629at 1880.961 kb on - strand, within Echvi_1629at 1880.997 kb on + strand, within Echvi_1629at 1880.998 kb on - strand, within Echvi_1629at 1881.004 kb on + strand, within Echvi_1629at 1881.005 kb on - strand, within Echvi_1629at 1881.007 kb on - strand, within Echvi_1629at 1881.032 kb on - strand, within Echvi_1629at 1881.049 kb on + strand, within Echvi_1629at 1881.049 kb on + strand, within Echvi_1629at 1881.049 kb on + strand, within Echvi_1629at 1881.050 kb on - strand, within Echvi_1629at 1881.050 kb on - strand, within Echvi_1629at 1881.050 kb on - strand, within Echvi_1629at 1881.050 kb on - strand, within Echvi_1629at 1881.050 kb on - strand, within Echvi_1629at 1881.054 kb on + strand, within Echvi_1629at 1881.055 kb on - strand, within Echvi_1629at 1881.055 kb on - strand, within Echvi_1629at 1881.103 kb on - strand, within Echvi_1629at 1881.190 kb on - strand, within Echvi_1629at 1881.273 kb on + strand, within Echvi_1629at 1881.274 kb on - strand, within Echvi_1629at 1881.277 kb on - strand, within Echvi_1629at 1881.288 kb on + strand, within Echvi_1629at 1881.337 kb on + strand, within Echvi_1629at 1881.337 kb on + strand, within Echvi_1629at 1881.339 kb on + strand, within Echvi_1629at 1881.339 kb on + strand, within Echvi_1629at 1881.339 kb on + strand, within Echvi_1629at 1881.339 kb on + strand, within Echvi_1629at 1881.339 kb on + strand, within Echvi_1629at 1881.340 kb on - strand, within Echvi_1629at 1881.340 kb on - strand, within Echvi_1629at 1881.597 kb on - strandat 1881.640 kb on + strandat 1881.649 kb on - strandat 1881.649 kb on - strandat 1881.649 kb on - strandat 1881.656 kb on + strandat 1881.719 kb on + strandat 1881.719 kb on + strandat 1881.812 kb on - strand, within Echvi_1630at 1881.818 kb on + strand, within Echvi_1630at 1881.818 kb on + strand, within Echvi_1630at 1881.819 kb on - strand, within Echvi_1630at 1881.932 kb on + strand, within Echvi_1630at 1881.941 kb on + strand, within Echvi_1630at 1881.942 kb on - strand, within Echvi_1630at 1881.948 kb on - strand, within Echvi_1630at 1881.980 kb on + strand, within Echvi_1630at 1881.980 kb on + strand, within Echvi_1630at 1881.980 kb on + strand, within Echvi_1630at 1882.054 kb on - strand, within Echvi_1630at 1882.082 kb on + strand, within Echvi_1630at 1882.082 kb on + strand, within Echvi_1630at 1882.199 kb on + strand, within Echvi_1630at 1882.199 kb on + strand, within Echvi_1630at 1882.199 kb on + strand, within Echvi_1630at 1882.209 kb on + strand, within Echvi_1630at 1882.210 kb on - strand, within Echvi_1630at 1882.211 kb on + strand, within Echvi_1630at 1882.211 kb on + strand, within Echvi_1630at 1882.211 kb on + strand, within Echvi_1630at 1882.211 kb on + strand, within Echvi_1630at 1882.211 kb on + strand, within Echvi_1630at 1882.211 kb on + strand, within Echvi_1630at 1882.212 kb on - strand, within Echvi_1630at 1882.266 kb on + strand, within Echvi_1630at 1882.283 kb on + strand, within Echvi_1630at 1882.310 kb on + strand, within Echvi_1630at 1882.311 kb on - strand, within Echvi_1630at 1882.398 kb on + strand, within Echvi_1630at 1882.399 kb on - strand, within Echvi_1630at 1882.448 kb on + strand, within Echvi_1630at 1882.449 kb on - strand, within Echvi_1630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
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1,879,872 + -0.3
1,879,921 + +0.3
1,879,921 + -0.1
1,879,988 + -1.4
1,879,988 + -1.2
1,879,989 - -0.7
1,879,989 - -0.9
1,879,989 - -0.1
1,880,007 - +0.7
1,880,061 + Echvi_1627 0.10 -1.1
1,880,061 + Echvi_1627 0.10 +0.9
1,880,062 - Echvi_1627 0.10 -1.1
1,880,062 - Echvi_1627 0.10 -2.0
1,880,062 - Echvi_1627 0.10 -0.4
1,880,062 - Echvi_1627 0.10 -0.2
1,880,062 - Echvi_1627 0.10 -0.4
1,880,065 - Echvi_1627 0.11 +1.4
1,880,157 + Echvi_1627 0.28 +1.1
1,880,158 - Echvi_1627 0.28 -2.5
1,880,161 - Echvi_1627 0.29 -0.1
1,880,161 - Echvi_1627 0.29 +0.7
1,880,236 - Echvi_1627 0.42 +0.8
1,880,273 - Echvi_1627 0.49 -1.1
1,880,273 - Echvi_1627 0.49 -0.0
1,880,341 + Echvi_1627 0.62 -0.3
1,880,342 - Echvi_1627 0.62 +0.2
1,880,342 - Echvi_1627 0.62 -0.8
1,880,342 - Echvi_1627 0.62 +0.6
1,880,342 - Echvi_1627 0.62 +0.2
1,880,386 + Echvi_1627 0.70 -0.4
1,880,387 - Echvi_1627 0.70 +0.0
1,880,387 - Echvi_1627 0.70 -0.8
1,880,401 - Echvi_1627 0.73 -0.9
1,880,495 - -0.9
1,880,506 + -0.4
1,880,507 - +1.9
1,880,541 - +0.6
1,880,604 + Echvi_1628 0.29 +0.6
1,880,604 + Echvi_1628 0.29 -1.5
1,880,604 + Echvi_1628 0.29 -0.4
1,880,604 + Echvi_1628 0.29 -0.7
1,880,605 - Echvi_1628 0.29 -0.6
1,880,668 + Echvi_1628 0.52 -0.1
1,880,763 + Echvi_1628 0.87 -1.2
1,880,763 + Echvi_1628 0.87 -0.1
1,880,787 + -0.4
1,880,795 - +0.1
1,880,960 + Echvi_1629 0.24 -1.5
1,880,961 - Echvi_1629 0.24 +0.4
1,880,961 - Echvi_1629 0.24 -0.8
1,880,961 - Echvi_1629 0.24 -0.7
1,880,997 + Echvi_1629 0.30 +0.7
1,880,998 - Echvi_1629 0.30 -1.2
1,881,004 + Echvi_1629 0.31 +0.1
1,881,005 - Echvi_1629 0.31 -0.6
1,881,007 - Echvi_1629 0.31 +0.9
1,881,032 - Echvi_1629 0.35 -0.9
1,881,049 + Echvi_1629 0.38 -0.5
1,881,049 + Echvi_1629 0.38 +0.2
1,881,049 + Echvi_1629 0.38 -1.2
1,881,050 - Echvi_1629 0.38 -1.6
1,881,050 - Echvi_1629 0.38 +0.1
1,881,050 - Echvi_1629 0.38 +1.9
1,881,050 - Echvi_1629 0.38 -0.1
1,881,050 - Echvi_1629 0.38 +1.2
1,881,054 + Echvi_1629 0.38 -1.6
1,881,055 - Echvi_1629 0.39 +0.4
1,881,055 - Echvi_1629 0.39 +0.1
1,881,103 - Echvi_1629 0.46 -0.9
1,881,190 - Echvi_1629 0.59 +0.9
1,881,273 + Echvi_1629 0.72 +0.9
1,881,274 - Echvi_1629 0.72 -0.7
1,881,277 - Echvi_1629 0.72 -1.9
1,881,288 + Echvi_1629 0.74 -0.8
1,881,337 + Echvi_1629 0.81 -2.1
1,881,337 + Echvi_1629 0.81 -1.8
1,881,339 + Echvi_1629 0.82 -1.2
1,881,339 + Echvi_1629 0.82 +0.1
1,881,339 + Echvi_1629 0.82 -0.4
1,881,339 + Echvi_1629 0.82 +0.1
1,881,339 + Echvi_1629 0.82 -1.6
1,881,340 - Echvi_1629 0.82 -1.0
1,881,340 - Echvi_1629 0.82 -1.0
1,881,597 - -1.2
1,881,640 + +0.2
1,881,649 - +0.4
1,881,649 - +0.0
1,881,649 - -0.5
1,881,656 + +0.2
1,881,719 + +0.3
1,881,719 + +0.1
1,881,812 - Echvi_1630 0.15 -1.4
1,881,818 + Echvi_1630 0.16 -0.1
1,881,818 + Echvi_1630 0.16 -0.9
1,881,819 - Echvi_1630 0.16 -0.8
1,881,932 + Echvi_1630 0.23 -0.0
1,881,941 + Echvi_1630 0.24 +1.3
1,881,942 - Echvi_1630 0.24 +0.6
1,881,948 - Echvi_1630 0.24 +2.7
1,881,980 + Echvi_1630 0.27 -0.5
1,881,980 + Echvi_1630 0.27 -1.2
1,881,980 + Echvi_1630 0.27 +1.7
1,882,054 - Echvi_1630 0.32 -0.0
1,882,082 + Echvi_1630 0.33 +1.0
1,882,082 + Echvi_1630 0.33 -0.7
1,882,199 + Echvi_1630 0.41 +1.1
1,882,199 + Echvi_1630 0.41 +0.1
1,882,199 + Echvi_1630 0.41 +0.6
1,882,209 + Echvi_1630 0.42 +0.2
1,882,210 - Echvi_1630 0.42 +0.0
1,882,211 + Echvi_1630 0.42 +0.6
1,882,211 + Echvi_1630 0.42 -0.1
1,882,211 + Echvi_1630 0.42 +0.0
1,882,211 + Echvi_1630 0.42 +1.9
1,882,211 + Echvi_1630 0.42 +0.3
1,882,211 + Echvi_1630 0.42 -0.5
1,882,212 - Echvi_1630 0.42 +0.4
1,882,266 + Echvi_1630 0.46 -0.4
1,882,283 + Echvi_1630 0.47 -0.6
1,882,310 + Echvi_1630 0.49 +1.1
1,882,311 - Echvi_1630 0.49 -0.0
1,882,398 + Echvi_1630 0.54 +0.3
1,882,399 - Echvi_1630 0.54 +1.5
1,882,448 + Echvi_1630 0.58 -0.1
1,882,449 - Echvi_1630 0.58 -1.2

Or see this region's nucleotide sequence