Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1524

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1523 and Echvi_1524 are separated by 230 nucleotidesEchvi_1524 and Echvi_1525 are separated by 51 nucleotides Echvi_1523: Echvi_1523 - Predicted permeases, at 1,747,144 to 1,748,082 _1523 Echvi_1524: Echvi_1524 - glucosamine--fructose-6-phosphate aminotransferase (isomerizing), at 1,748,313 to 1,750,154 _1524 Echvi_1525: Echvi_1525 - hypothetical protein, at 1,750,206 to 1,751,612 _1525 Position (kb) 1748 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1747.322 kb on - strand, within Echvi_1523at 1747.430 kb on + strand, within Echvi_1523at 1747.493 kb on - strand, within Echvi_1523at 1747.529 kb on - strand, within Echvi_1523at 1747.549 kb on + strand, within Echvi_1523at 1747.549 kb on + strand, within Echvi_1523at 1747.550 kb on - strand, within Echvi_1523at 1747.550 kb on - strand, within Echvi_1523at 1747.550 kb on - strand, within Echvi_1523at 1747.604 kb on + strand, within Echvi_1523at 1747.605 kb on - strand, within Echvi_1523at 1747.605 kb on - strand, within Echvi_1523at 1747.655 kb on - strand, within Echvi_1523at 1747.655 kb on - strand, within Echvi_1523at 1747.655 kb on - strand, within Echvi_1523at 1747.657 kb on - strand, within Echvi_1523at 1747.657 kb on - strand, within Echvi_1523at 1747.705 kb on + strand, within Echvi_1523at 1747.738 kb on + strand, within Echvi_1523at 1747.774 kb on + strand, within Echvi_1523at 1747.922 kb on - strand, within Echvi_1523at 1748.074 kb on - strandat 1748.074 kb on - strandat 1748.104 kb on + strandat 1748.115 kb on + strandat 1748.115 kb on + strandat 1748.115 kb on + strandat 1748.115 kb on + strandat 1748.117 kb on + strandat 1748.117 kb on + strandat 1748.134 kb on + strandat 1748.188 kb on + strandat 1748.297 kb on - strandat 1748.299 kb on + strandat 1748.300 kb on - strandat 1748.300 kb on - strandat 1748.300 kb on - strandat 1748.300 kb on - strandat 1748.306 kb on + strandat 1748.306 kb on + strandat 1748.306 kb on + strandat 1748.307 kb on - strandat 1748.307 kb on - strandat 1748.307 kb on - strandat 1748.307 kb on - strandat 1748.308 kb on + strandat 1748.308 kb on + strandat 1748.308 kb on + strandat 1748.308 kb on + strandat 1748.308 kb on + strandat 1748.309 kb on - strandat 1748.309 kb on - strandat 1748.315 kb on - strandat 1750.166 kb on - strandat 1750.166 kb on - strandat 1750.166 kb on - strandat 1750.169 kb on - strandat 1750.193 kb on - strandat 1750.258 kb on - strandat 1750.278 kb on - strandat 1750.300 kb on - strandat 1750.300 kb on - strandat 1750.302 kb on - strandat 1750.342 kb on - strandat 1750.342 kb on - strandat 1750.342 kb on - strandat 1750.407 kb on - strand, within Echvi_1525at 1750.421 kb on - strand, within Echvi_1525at 1750.421 kb on - strand, within Echvi_1525at 1750.423 kb on - strand, within Echvi_1525at 1750.423 kb on - strand, within Echvi_1525at 1750.423 kb on - strand, within Echvi_1525at 1750.423 kb on - strand, within Echvi_1525at 1750.423 kb on - strand, within Echvi_1525at 1750.425 kb on - strand, within Echvi_1525at 1750.425 kb on - strand, within Echvi_1525at 1750.425 kb on - strand, within Echvi_1525at 1750.427 kb on - strand, within Echvi_1525at 1750.427 kb on - strand, within Echvi_1525at 1750.427 kb on - strand, within Echvi_1525at 1750.538 kb on - strand, within Echvi_1525at 1750.548 kb on - strand, within Echvi_1525at 1750.575 kb on - strand, within Echvi_1525at 1750.609 kb on - strand, within Echvi_1525at 1750.726 kb on - strand, within Echvi_1525at 1750.749 kb on - strand, within Echvi_1525at 1750.749 kb on - strand, within Echvi_1525at 1750.775 kb on - strand, within Echvi_1525at 1750.839 kb on - strand, within Echvi_1525at 1750.862 kb on - strand, within Echvi_1525at 1750.862 kb on - strand, within Echvi_1525at 1750.869 kb on - strand, within Echvi_1525at 1750.869 kb on - strand, within Echvi_1525at 1750.887 kb on - strand, within Echvi_1525at 1750.887 kb on - strand, within Echvi_1525at 1750.887 kb on - strand, within Echvi_1525at 1750.941 kb on - strand, within Echvi_1525at 1750.948 kb on - strand, within Echvi_1525at 1751.121 kb on - strand, within Echvi_1525

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
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1,747,322 - Echvi_1523 0.19 -0.7
1,747,430 + Echvi_1523 0.30 -0.6
1,747,493 - Echvi_1523 0.37 -0.2
1,747,529 - Echvi_1523 0.41 +0.3
1,747,549 + Echvi_1523 0.43 -0.7
1,747,549 + Echvi_1523 0.43 -0.0
1,747,550 - Echvi_1523 0.43 -0.1
1,747,550 - Echvi_1523 0.43 +0.6
1,747,550 - Echvi_1523 0.43 -0.4
1,747,604 + Echvi_1523 0.49 +2.0
1,747,605 - Echvi_1523 0.49 -1.1
1,747,605 - Echvi_1523 0.49 +0.6
1,747,655 - Echvi_1523 0.54 -0.4
1,747,655 - Echvi_1523 0.54 +1.8
1,747,655 - Echvi_1523 0.54 +0.3
1,747,657 - Echvi_1523 0.55 +0.0
1,747,657 - Echvi_1523 0.55 +0.1
1,747,705 + Echvi_1523 0.60 -0.3
1,747,738 + Echvi_1523 0.63 -1.6
1,747,774 + Echvi_1523 0.67 +1.0
1,747,922 - Echvi_1523 0.83 +0.8
1,748,074 - -0.4
1,748,074 - -0.2
1,748,104 + -0.5
1,748,115 + +0.4
1,748,115 + -0.4
1,748,115 + -0.0
1,748,115 + -1.0
1,748,117 + +0.4
1,748,117 + -0.4
1,748,134 + +0.8
1,748,188 + -1.9
1,748,297 - -0.7
1,748,299 + -0.5
1,748,300 - -1.3
1,748,300 - -0.9
1,748,300 - -0.3
1,748,300 - +0.0
1,748,306 + +0.3
1,748,306 + -0.6
1,748,306 + +1.0
1,748,307 - -1.1
1,748,307 - +0.0
1,748,307 - -0.5
1,748,307 - +1.3
1,748,308 + +0.1
1,748,308 + -0.6
1,748,308 + -1.2
1,748,308 + -0.4
1,748,308 + -0.1
1,748,309 - +0.4
1,748,309 - +0.2
1,748,315 - +0.2
1,750,166 - +0.2
1,750,166 - -0.3
1,750,166 - +0.8
1,750,169 - -1.0
1,750,193 - -0.1
1,750,258 - -2.2
1,750,278 - -2.2
1,750,300 - -0.5
1,750,300 - -2.7
1,750,302 - -1.5
1,750,342 - -0.9
1,750,342 - +2.0
1,750,342 - -1.2
1,750,407 - Echvi_1525 0.14 -0.3
1,750,421 - Echvi_1525 0.15 -0.5
1,750,421 - Echvi_1525 0.15 -1.5
1,750,423 - Echvi_1525 0.15 -1.5
1,750,423 - Echvi_1525 0.15 -1.1
1,750,423 - Echvi_1525 0.15 +0.6
1,750,423 - Echvi_1525 0.15 -0.9
1,750,423 - Echvi_1525 0.15 -0.8
1,750,425 - Echvi_1525 0.16 -1.9
1,750,425 - Echvi_1525 0.16 +0.4
1,750,425 - Echvi_1525 0.16 -0.2
1,750,427 - Echvi_1525 0.16 -0.5
1,750,427 - Echvi_1525 0.16 -1.4
1,750,427 - Echvi_1525 0.16 -0.4
1,750,538 - Echvi_1525 0.24 -1.8
1,750,548 - Echvi_1525 0.24 -1.7
1,750,575 - Echvi_1525 0.26 -2.0
1,750,609 - Echvi_1525 0.29 -1.6
1,750,726 - Echvi_1525 0.37 -0.7
1,750,749 - Echvi_1525 0.39 -2.4
1,750,749 - Echvi_1525 0.39 -0.9
1,750,775 - Echvi_1525 0.40 +0.4
1,750,839 - Echvi_1525 0.45 -1.8
1,750,862 - Echvi_1525 0.47 -1.2
1,750,862 - Echvi_1525 0.47 -0.8
1,750,869 - Echvi_1525 0.47 -1.4
1,750,869 - Echvi_1525 0.47 +0.1
1,750,887 - Echvi_1525 0.48 -1.7
1,750,887 - Echvi_1525 0.48 -0.8
1,750,887 - Echvi_1525 0.48 -1.0
1,750,941 - Echvi_1525 0.52 +0.8
1,750,948 - Echvi_1525 0.53 -1.0
1,751,121 - Echvi_1525 0.65 -0.4

Or see this region's nucleotide sequence