Strain Fitness in Agrobacterium fabrum C58 around Atu0205

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0204 and Atu0205 are separated by 223 nucleotidesAtu0205 and Atu0206 are separated by 111 nucleotidesAtu0206 and Atu0207 overlap by 4 nucleotides Atu0204: Atu0204 - hypothetical protein, at 208,258 to 209,361 Atu0204 Atu0205: Atu0205 - methylmalonate-semialdehyde dehydrogenase, at 209,585 to 211,141 Atu0205 Atu0206: Atu0206 - hypothetical protein, at 211,253 to 211,570 Atu0206 Atu0207: Atu0207 - transcriptional regulator, LysR family, at 211,567 to 212,448 Atu0207 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 208.623 kb on + strand, within Atu0204at 208.660 kb on + strand, within Atu0204at 208.691 kb on + strand, within Atu0204at 208.742 kb on + strand, within Atu0204at 208.750 kb on - strand, within Atu0204at 208.766 kb on + strand, within Atu0204at 208.771 kb on + strand, within Atu0204at 208.779 kb on - strand, within Atu0204at 208.806 kb on - strand, within Atu0204at 208.834 kb on - strand, within Atu0204at 208.834 kb on - strand, within Atu0204at 208.834 kb on - strand, within Atu0204at 208.847 kb on + strand, within Atu0204at 208.855 kb on - strand, within Atu0204at 208.855 kb on - strand, within Atu0204at 208.892 kb on + strand, within Atu0204at 208.905 kb on + strand, within Atu0204at 208.984 kb on + strand, within Atu0204at 209.029 kb on - strand, within Atu0204at 209.062 kb on + strand, within Atu0204at 209.192 kb on - strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.216 kb on + strand, within Atu0204at 209.271 kb on - strandat 209.342 kb on + strandat 209.350 kb on + strandat 209.429 kb on - strandat 209.637 kb on - strandat 209.718 kb on - strandat 209.719 kb on + strandat 209.719 kb on - strandat 209.839 kb on - strand, within Atu0205at 209.920 kb on - strand, within Atu0205at 210.053 kb on + strand, within Atu0205at 210.084 kb on - strand, within Atu0205at 210.097 kb on - strand, within Atu0205at 210.097 kb on - strand, within Atu0205at 210.126 kb on + strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.292 kb on + strand, within Atu0205at 210.385 kb on - strand, within Atu0205at 210.405 kb on + strand, within Atu0205at 210.453 kb on - strand, within Atu0205at 210.480 kb on + strand, within Atu0205at 210.569 kb on - strand, within Atu0205at 210.587 kb on + strand, within Atu0205at 210.595 kb on - strand, within Atu0205at 210.632 kb on - strand, within Atu0205at 210.648 kb on - strand, within Atu0205at 210.713 kb on + strand, within Atu0205at 210.728 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.791 kb on - strand, within Atu0205at 210.809 kb on - strand, within Atu0205at 210.837 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.866 kb on - strand, within Atu0205at 211.082 kb on + strandat 211.189 kb on + strandat 211.306 kb on - strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.539 kb on - strandat 211.581 kb on + strandat 211.612 kb on + strandat 211.642 kb on + strandat 211.646 kb on - strandat 211.647 kb on + strandat 211.650 kb on - strandat 211.680 kb on + strand, within Atu0207at 211.736 kb on + strand, within Atu0207at 211.771 kb on - strand, within Atu0207at 211.817 kb on - strand, within Atu0207at 211.826 kb on - strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.843 kb on - strand, within Atu0207at 211.902 kb on + strand, within Atu0207at 211.911 kb on + strand, within Atu0207at 211.919 kb on - strand, within Atu0207at 211.953 kb on + strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.961 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.013 kb on + strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.021 kb on - strand, within Atu0207at 212.064 kb on - strand, within Atu0207

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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208,623 + Atu0204 0.33 +1.6
208,660 + Atu0204 0.36 +0.0
208,691 + Atu0204 0.39 -0.3
208,742 + Atu0204 0.44 +0.3
208,750 - Atu0204 0.45 -0.5
208,766 + Atu0204 0.46 +0.9
208,771 + Atu0204 0.46 -1.0
208,779 - Atu0204 0.47 +0.2
208,806 - Atu0204 0.50 -0.3
208,834 - Atu0204 0.52 -0.9
208,834 - Atu0204 0.52 +0.5
208,834 - Atu0204 0.52 -0.1
208,847 + Atu0204 0.53 -0.2
208,855 - Atu0204 0.54 +0.2
208,855 - Atu0204 0.54 +0.4
208,892 + Atu0204 0.57 +0.2
208,905 + Atu0204 0.59 -0.2
208,984 + Atu0204 0.66 -0.2
209,029 - Atu0204 0.70 +0.2
209,062 + Atu0204 0.73 +0.2
209,192 - Atu0204 0.85 +0.1
209,216 + Atu0204 0.87 +0.1
209,216 + Atu0204 0.87 +0.4
209,216 + Atu0204 0.87 -0.1
209,216 + Atu0204 0.87 +1.7
209,271 - +0.5
209,342 + +1.0
209,350 + +1.0
209,429 - +0.5
209,637 - -3.7
209,718 - -2.4
209,719 + -0.5
209,719 - -1.8
209,839 - Atu0205 0.16 -3.1
209,920 - Atu0205 0.22 -5.7
210,053 + Atu0205 0.30 -0.8
210,084 - Atu0205 0.32 -1.9
210,097 - Atu0205 0.33 -4.4
210,097 - Atu0205 0.33 -4.6
210,126 + Atu0205 0.35 -2.8
210,265 - Atu0205 0.44 -5.9
210,265 - Atu0205 0.44 -4.9
210,265 - Atu0205 0.44 -1.8
210,292 + Atu0205 0.45 -3.9
210,385 - Atu0205 0.51 -1.3
210,405 + Atu0205 0.53 -3.7
210,453 - Atu0205 0.56 -2.8
210,480 + Atu0205 0.57 -2.3
210,569 - Atu0205 0.63 -2.5
210,587 + Atu0205 0.64 -4.4
210,595 - Atu0205 0.65 -4.9
210,632 - Atu0205 0.67 -4.5
210,648 - Atu0205 0.68 -4.4
210,713 + Atu0205 0.72 -5.9
210,728 - Atu0205 0.73 -2.3
210,768 - Atu0205 0.76 -4.5
210,768 - Atu0205 0.76 -4.8
210,791 - Atu0205 0.77 -3.2
210,809 - Atu0205 0.79 -5.9
210,837 - Atu0205 0.80 -1.0
210,859 - Atu0205 0.82 -6.1
210,859 - Atu0205 0.82 -4.4
210,866 - Atu0205 0.82 -2.8
211,082 + -3.0
211,189 + +0.2
211,306 - Atu0206 0.17 -2.2
211,397 + Atu0206 0.45 -0.1
211,397 + Atu0206 0.45 +0.2
211,539 - -0.4
211,581 + -4.0
211,612 + -3.2
211,642 + -3.6
211,646 - -2.5
211,647 + -4.5
211,650 - -5.0
211,680 + Atu0207 0.13 -4.9
211,736 + Atu0207 0.19 -2.0
211,771 - Atu0207 0.23 -4.9
211,817 - Atu0207 0.28 -6.3
211,826 - Atu0207 0.29 -5.4
211,833 + Atu0207 0.30 -3.1
211,833 + Atu0207 0.30 -3.8
211,843 - Atu0207 0.31 -4.5
211,902 + Atu0207 0.38 -4.4
211,911 + Atu0207 0.39 -3.9
211,919 - Atu0207 0.40 -3.1
211,953 + Atu0207 0.44 -2.8
211,956 - Atu0207 0.44 -4.5
211,956 - Atu0207 0.44 -4.9
211,961 + Atu0207 0.45 -5.0
212,008 + Atu0207 0.50 -5.3
212,008 + Atu0207 0.50 -5.2
212,013 + Atu0207 0.51 -4.9
212,016 - Atu0207 0.51 -4.0
212,016 - Atu0207 0.51 -5.2
212,016 - Atu0207 0.51 -5.0
212,016 - Atu0207 0.51 -4.2
212,021 - Atu0207 0.51 -1.2
212,064 - Atu0207 0.56 -1.5

Or see this region's nucleotide sequence