Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4530

Experiment: m.b. Fusidic 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4529 and Echvi_4530 are separated by 123 nucleotidesEchvi_4530 and Echvi_4531 are separated by 20 nucleotides Echvi_4529: Echvi_4529 - Metal-dependent hydrolase, at 5,413,194 to 5,414,069 _4529 Echvi_4530: Echvi_4530 - hypothetical protein, at 5,414,193 to 5,415,620 _4530 Echvi_4531: Echvi_4531 - TonB-linked outer membrane protein, SusC/RagA family, at 5,415,641 to 5,419,123 _4531 Position (kb) 5414 5415 5416Strain fitness (log2 ratio) -2 -1 0 1 2at 5413.195 kb on + strandat 5413.241 kb on + strandat 5413.241 kb on + strandat 5413.252 kb on + strandat 5413.252 kb on + strandat 5413.253 kb on - strandat 5413.253 kb on - strandat 5413.274 kb on - strandat 5413.305 kb on + strand, within Echvi_4529at 5413.305 kb on + strand, within Echvi_4529at 5413.306 kb on - strand, within Echvi_4529at 5413.306 kb on - strand, within Echvi_4529at 5413.310 kb on - strand, within Echvi_4529at 5413.326 kb on - strand, within Echvi_4529at 5413.446 kb on - strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.697 kb on + strand, within Echvi_4529at 5413.698 kb on - strand, within Echvi_4529at 5413.778 kb on - strand, within Echvi_4529at 5413.838 kb on + strand, within Echvi_4529at 5413.843 kb on - strand, within Echvi_4529at 5413.935 kb on - strand, within Echvi_4529at 5413.948 kb on + strand, within Echvi_4529at 5413.997 kb on + strandat 5414.003 kb on + strandat 5414.003 kb on + strandat 5414.003 kb on + strandat 5414.015 kb on + strandat 5414.049 kb on - strandat 5414.061 kb on + strandat 5414.102 kb on + strandat 5414.102 kb on + strandat 5414.102 kb on + strandat 5414.124 kb on - strandat 5414.158 kb on - strandat 5414.161 kb on + strandat 5414.161 kb on + strandat 5414.161 kb on + strandat 5414.162 kb on - strandat 5414.162 kb on - strandat 5414.226 kb on - strandat 5414.259 kb on - strandat 5414.259 kb on - strandat 5414.297 kb on - strandat 5414.405 kb on - strand, within Echvi_4530at 5414.413 kb on - strand, within Echvi_4530at 5414.413 kb on - strand, within Echvi_4530at 5414.416 kb on + strand, within Echvi_4530at 5414.416 kb on + strand, within Echvi_4530at 5414.417 kb on - strand, within Echvi_4530at 5414.420 kb on + strand, within Echvi_4530at 5414.537 kb on - strand, within Echvi_4530at 5414.563 kb on + strand, within Echvi_4530at 5414.564 kb on - strand, within Echvi_4530at 5414.657 kb on + strand, within Echvi_4530at 5414.657 kb on + strand, within Echvi_4530at 5414.657 kb on + strand, within Echvi_4530at 5414.658 kb on - strand, within Echvi_4530at 5414.659 kb on + strand, within Echvi_4530at 5414.659 kb on + strand, within Echvi_4530at 5414.660 kb on - strand, within Echvi_4530at 5414.660 kb on - strand, within Echvi_4530at 5414.726 kb on + strand, within Echvi_4530at 5414.726 kb on + strand, within Echvi_4530at 5414.756 kb on - strand, within Echvi_4530at 5414.756 kb on - strand, within Echvi_4530at 5414.793 kb on - strand, within Echvi_4530at 5414.793 kb on - strand, within Echvi_4530at 5414.793 kb on - strand, within Echvi_4530at 5414.868 kb on - strand, within Echvi_4530at 5414.946 kb on + strand, within Echvi_4530at 5414.947 kb on - strand, within Echvi_4530at 5414.947 kb on - strand, within Echvi_4530at 5414.947 kb on - strand, within Echvi_4530at 5415.056 kb on + strand, within Echvi_4530at 5415.057 kb on - strand, within Echvi_4530at 5415.057 kb on - strand, within Echvi_4530at 5415.057 kb on - strand, within Echvi_4530at 5415.067 kb on + strand, within Echvi_4530at 5415.067 kb on + strand, within Echvi_4530at 5415.067 kb on + strand, within Echvi_4530at 5415.068 kb on - strand, within Echvi_4530at 5415.068 kb on - strand, within Echvi_4530at 5415.077 kb on + strand, within Echvi_4530at 5415.078 kb on - strand, within Echvi_4530at 5415.092 kb on - strand, within Echvi_4530at 5415.094 kb on - strand, within Echvi_4530at 5415.132 kb on - strand, within Echvi_4530at 5415.132 kb on - strand, within Echvi_4530at 5415.133 kb on + strand, within Echvi_4530at 5415.133 kb on + strand, within Echvi_4530at 5415.133 kb on + strand, within Echvi_4530at 5415.133 kb on + strand, within Echvi_4530at 5415.133 kb on + strand, within Echvi_4530at 5415.133 kb on + strand, within Echvi_4530at 5415.134 kb on - strand, within Echvi_4530at 5415.134 kb on - strand, within Echvi_4530at 5415.134 kb on - strand, within Echvi_4530at 5415.134 kb on - strand, within Echvi_4530at 5415.135 kb on + strand, within Echvi_4530at 5415.154 kb on + strand, within Echvi_4530at 5415.155 kb on - strand, within Echvi_4530at 5415.155 kb on - strand, within Echvi_4530at 5415.155 kb on - strand, within Echvi_4530at 5415.210 kb on - strand, within Echvi_4530at 5415.271 kb on + strand, within Echvi_4530at 5415.275 kb on + strand, within Echvi_4530at 5415.300 kb on + strand, within Echvi_4530at 5415.332 kb on + strand, within Echvi_4530at 5415.333 kb on - strand, within Echvi_4530at 5415.487 kb on - strandat 5415.487 kb on - strandat 5415.539 kb on + strandat 5415.598 kb on + strandat 5415.626 kb on + strandat 5415.636 kb on + strandat 5415.643 kb on - strandat 5415.649 kb on + strandat 5415.649 kb on + strandat 5415.669 kb on + strandat 5415.790 kb on - strandat 5415.790 kb on - strandat 5415.809 kb on - strandat 5415.810 kb on + strandat 5415.836 kb on - strandat 5415.836 kb on - strandat 5415.847 kb on + strandat 5415.849 kb on + strandat 5415.854 kb on - strandat 5415.859 kb on + strandat 5415.927 kb on + strandat 5415.928 kb on - strandat 5415.966 kb on + strandat 5416.034 kb on - strand, within Echvi_4531at 5416.068 kb on + strand, within Echvi_4531at 5416.069 kb on - strand, within Echvi_4531at 5416.069 kb on - strand, within Echvi_4531at 5416.080 kb on + strand, within Echvi_4531at 5416.132 kb on + strand, within Echvi_4531at 5416.144 kb on + strand, within Echvi_4531at 5416.145 kb on - strand, within Echvi_4531at 5416.159 kb on - strand, within Echvi_4531at 5416.159 kb on - strand, within Echvi_4531at 5416.188 kb on + strand, within Echvi_4531at 5416.189 kb on - strand, within Echvi_4531at 5416.189 kb on - strand, within Echvi_4531at 5416.214 kb on + strand, within Echvi_4531at 5416.215 kb on - strand, within Echvi_4531at 5416.226 kb on - strand, within Echvi_4531at 5416.227 kb on + strand, within Echvi_4531at 5416.228 kb on - strand, within Echvi_4531at 5416.228 kb on - strand, within Echvi_4531at 5416.253 kb on - strand, within Echvi_4531at 5416.269 kb on + strand, within Echvi_4531at 5416.270 kb on - strand, within Echvi_4531at 5416.270 kb on - strand, within Echvi_4531at 5416.270 kb on - strand, within Echvi_4531at 5416.308 kb on + strand, within Echvi_4531at 5416.308 kb on + strand, within Echvi_4531at 5416.308 kb on + strand, within Echvi_4531at 5416.308 kb on + strand, within Echvi_4531at 5416.361 kb on - strand, within Echvi_4531at 5416.391 kb on - strand, within Echvi_4531at 5416.409 kb on - strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.495 kb on + strand, within Echvi_4531at 5416.496 kb on - strand, within Echvi_4531at 5416.526 kb on - strand, within Echvi_4531at 5416.561 kb on + strand, within Echvi_4531at 5416.580 kb on - strand, within Echvi_4531at 5416.580 kb on - strand, within Echvi_4531at 5416.595 kb on - strand, within Echvi_4531

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml
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5,413,195 + -0.6
5,413,241 + +0.5
5,413,241 + -0.1
5,413,252 + -1.2
5,413,252 + -0.0
5,413,253 - -0.4
5,413,253 - -0.3
5,413,274 - -1.0
5,413,305 + Echvi_4529 0.13 +0.4
5,413,305 + Echvi_4529 0.13 +0.2
5,413,306 - Echvi_4529 0.13 -0.6
5,413,306 - Echvi_4529 0.13 +0.4
5,413,310 - Echvi_4529 0.13 -0.2
5,413,326 - Echvi_4529 0.15 -1.6
5,413,446 - Echvi_4529 0.29 -0.0
5,413,622 + Echvi_4529 0.49 -0.2
5,413,622 + Echvi_4529 0.49 +0.7
5,413,622 + Echvi_4529 0.49 +1.1
5,413,622 + Echvi_4529 0.49 -0.4
5,413,622 + Echvi_4529 0.49 -0.5
5,413,622 + Echvi_4529 0.49 +0.4
5,413,622 + Echvi_4529 0.49 +0.2
5,413,623 - Echvi_4529 0.49 +0.4
5,413,623 - Echvi_4529 0.49 -1.2
5,413,623 - Echvi_4529 0.49 +0.9
5,413,623 - Echvi_4529 0.49 +0.3
5,413,623 - Echvi_4529 0.49 -0.0
5,413,623 - Echvi_4529 0.49 +0.6
5,413,697 + Echvi_4529 0.57 +0.2
5,413,698 - Echvi_4529 0.58 -0.4
5,413,778 - Echvi_4529 0.67 +0.6
5,413,838 + Echvi_4529 0.74 -0.9
5,413,843 - Echvi_4529 0.74 -0.9
5,413,935 - Echvi_4529 0.85 +0.5
5,413,948 + Echvi_4529 0.86 +0.0
5,413,997 + -2.1
5,414,003 + +0.6
5,414,003 + -0.3
5,414,003 + +0.3
5,414,015 + -1.2
5,414,049 - +1.8
5,414,061 + -1.0
5,414,102 + +2.4
5,414,102 + -0.8
5,414,102 + -0.3
5,414,124 - +0.1
5,414,158 - -0.2
5,414,161 + -0.1
5,414,161 + -1.1
5,414,161 + -0.5
5,414,162 - +0.4
5,414,162 - -0.5
5,414,226 - -2.2
5,414,259 - -1.1
5,414,259 - +1.5
5,414,297 - +0.4
5,414,405 - Echvi_4530 0.15 -0.6
5,414,413 - Echvi_4530 0.15 -1.4
5,414,413 - Echvi_4530 0.15 +1.5
5,414,416 + Echvi_4530 0.16 +0.0
5,414,416 + Echvi_4530 0.16 +0.7
5,414,417 - Echvi_4530 0.16 +1.4
5,414,420 + Echvi_4530 0.16 -0.4
5,414,537 - Echvi_4530 0.24 -1.8
5,414,563 + Echvi_4530 0.26 -0.7
5,414,564 - Echvi_4530 0.26 -1.2
5,414,657 + Echvi_4530 0.32 -0.4
5,414,657 + Echvi_4530 0.32 -0.4
5,414,657 + Echvi_4530 0.32 -0.4
5,414,658 - Echvi_4530 0.33 -1.2
5,414,659 + Echvi_4530 0.33 +1.2
5,414,659 + Echvi_4530 0.33 -0.1
5,414,660 - Echvi_4530 0.33 -0.5
5,414,660 - Echvi_4530 0.33 -1.1
5,414,726 + Echvi_4530 0.37 -0.5
5,414,726 + Echvi_4530 0.37 -1.2
5,414,756 - Echvi_4530 0.39 +0.4
5,414,756 - Echvi_4530 0.39 +1.9
5,414,793 - Echvi_4530 0.42 +0.0
5,414,793 - Echvi_4530 0.42 -0.0
5,414,793 - Echvi_4530 0.42 +0.9
5,414,868 - Echvi_4530 0.47 +0.2
5,414,946 + Echvi_4530 0.53 +0.7
5,414,947 - Echvi_4530 0.53 +0.3
5,414,947 - Echvi_4530 0.53 -0.1
5,414,947 - Echvi_4530 0.53 +0.1
5,415,056 + Echvi_4530 0.60 -0.3
5,415,057 - Echvi_4530 0.61 -0.4
5,415,057 - Echvi_4530 0.61 -0.8
5,415,057 - Echvi_4530 0.61 +0.4
5,415,067 + Echvi_4530 0.61 -0.6
5,415,067 + Echvi_4530 0.61 +0.8
5,415,067 + Echvi_4530 0.61 -0.0
5,415,068 - Echvi_4530 0.61 -0.1
5,415,068 - Echvi_4530 0.61 -1.7
5,415,077 + Echvi_4530 0.62 +0.9
5,415,078 - Echvi_4530 0.62 +0.4
5,415,092 - Echvi_4530 0.63 -0.9
5,415,094 - Echvi_4530 0.63 -0.6
5,415,132 - Echvi_4530 0.66 -0.3
5,415,132 - Echvi_4530 0.66 -0.6
5,415,133 + Echvi_4530 0.66 -0.2
5,415,133 + Echvi_4530 0.66 +0.1
5,415,133 + Echvi_4530 0.66 -0.5
5,415,133 + Echvi_4530 0.66 -0.1
5,415,133 + Echvi_4530 0.66 +1.9
5,415,133 + Echvi_4530 0.66 +0.6
5,415,134 - Echvi_4530 0.66 -2.6
5,415,134 - Echvi_4530 0.66 -0.3
5,415,134 - Echvi_4530 0.66 -0.9
5,415,134 - Echvi_4530 0.66 -1.0
5,415,135 + Echvi_4530 0.66 +0.5
5,415,154 + Echvi_4530 0.67 -0.3
5,415,155 - Echvi_4530 0.67 +0.4
5,415,155 - Echvi_4530 0.67 -1.1
5,415,155 - Echvi_4530 0.67 -0.0
5,415,210 - Echvi_4530 0.71 -1.1
5,415,271 + Echvi_4530 0.75 +1.5
5,415,275 + Echvi_4530 0.76 -0.6
5,415,300 + Echvi_4530 0.78 -1.5
5,415,332 + Echvi_4530 0.80 +0.5
5,415,333 - Echvi_4530 0.80 +1.1
5,415,487 - -0.9
5,415,487 - -0.1
5,415,539 + +0.4
5,415,598 + -0.1
5,415,626 + -0.5
5,415,636 + +0.1
5,415,643 - -0.3
5,415,649 + +1.3
5,415,649 + +1.9
5,415,669 + +0.7
5,415,790 - -1.3
5,415,790 - -1.1
5,415,809 - -0.1
5,415,810 + -0.2
5,415,836 - +0.2
5,415,836 - -0.5
5,415,847 + -1.1
5,415,849 + -2.2
5,415,854 - -0.4
5,415,859 + -0.4
5,415,927 + +0.6
5,415,928 - -0.7
5,415,966 + +0.6
5,416,034 - Echvi_4531 0.11 +1.4
5,416,068 + Echvi_4531 0.12 +0.8
5,416,069 - Echvi_4531 0.12 -1.1
5,416,069 - Echvi_4531 0.12 +0.7
5,416,080 + Echvi_4531 0.13 -0.1
5,416,132 + Echvi_4531 0.14 -0.3
5,416,144 + Echvi_4531 0.14 -0.0
5,416,145 - Echvi_4531 0.14 +0.6
5,416,159 - Echvi_4531 0.15 -0.1
5,416,159 - Echvi_4531 0.15 -0.0
5,416,188 + Echvi_4531 0.16 +0.7
5,416,189 - Echvi_4531 0.16 -2.0
5,416,189 - Echvi_4531 0.16 -0.6
5,416,214 + Echvi_4531 0.16 -0.1
5,416,215 - Echvi_4531 0.16 +1.0
5,416,226 - Echvi_4531 0.17 +0.4
5,416,227 + Echvi_4531 0.17 +0.1
5,416,228 - Echvi_4531 0.17 -0.5
5,416,228 - Echvi_4531 0.17 -1.3
5,416,253 - Echvi_4531 0.18 -0.2
5,416,269 + Echvi_4531 0.18 -0.5
5,416,270 - Echvi_4531 0.18 +0.8
5,416,270 - Echvi_4531 0.18 +1.5
5,416,270 - Echvi_4531 0.18 -0.1
5,416,308 + Echvi_4531 0.19 -1.5
5,416,308 + Echvi_4531 0.19 +0.0
5,416,308 + Echvi_4531 0.19 +0.4
5,416,308 + Echvi_4531 0.19 -1.5
5,416,361 - Echvi_4531 0.21 -0.4
5,416,391 - Echvi_4531 0.22 +1.2
5,416,409 - Echvi_4531 0.22 -0.9
5,416,495 + Echvi_4531 0.25 -0.6
5,416,495 + Echvi_4531 0.25 +1.1
5,416,495 + Echvi_4531 0.25 +0.2
5,416,495 + Echvi_4531 0.25 -0.1
5,416,495 + Echvi_4531 0.25 -2.0
5,416,495 + Echvi_4531 0.25 -0.8
5,416,495 + Echvi_4531 0.25 -0.8
5,416,495 + Echvi_4531 0.25 +0.5
5,416,496 - Echvi_4531 0.25 -0.5
5,416,526 - Echvi_4531 0.25 +0.6
5,416,561 + Echvi_4531 0.26 +1.4
5,416,580 - Echvi_4531 0.27 -1.6
5,416,580 - Echvi_4531 0.27 +1.4
5,416,595 - Echvi_4531 0.27 +0.9

Or see this region's nucleotide sequence