Experiment: m.b. Fusidic 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1572 and Echvi_1573 are separated by 2 nucleotides Echvi_1573 and Echvi_1574 are separated by 242 nucleotides
Echvi_1572: Echvi_1572 - Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) (from data) , at 1,806,598 to 1,808,706
_1572
Echvi_1573: Echvi_1573 - L-rhamnose isomerase (EC 5.3.1.14) (from data) , at 1,808,709 to 1,809,992
_1573
Echvi_1574: Echvi_1574 - Rhamnulokinase (EC 2.7.1.5) (from data) , at 1,810,235 to 1,811,581
_1574
Position (kb)
1808
1809
1810 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1808.010 kb on - strand, within Echvi_1572 at 1808.126 kb on - strand, within Echvi_1572 at 1808.250 kb on - strand, within Echvi_1572 at 1808.283 kb on - strand, within Echvi_1572 at 1808.283 kb on - strand, within Echvi_1572 at 1808.325 kb on + strand, within Echvi_1572 at 1808.325 kb on + strand, within Echvi_1572 at 1808.348 kb on + strand, within Echvi_1572 at 1808.348 kb on + strand, within Echvi_1572 at 1808.372 kb on - strand, within Echvi_1572 at 1808.397 kb on - strand, within Echvi_1572 at 1808.447 kb on + strand, within Echvi_1572 at 1808.619 kb on - strand at 1808.644 kb on - strand at 1808.652 kb on + strand at 1808.658 kb on + strand at 1808.661 kb on + strand at 1808.661 kb on + strand at 1808.704 kb on + strand at 1808.705 kb on - strand at 1808.705 kb on - strand at 1808.708 kb on + strand at 1808.716 kb on + strand at 1808.717 kb on - strand at 1808.732 kb on - strand at 1808.830 kb on + strand at 1808.927 kb on + strand, within Echvi_1573 at 1808.928 kb on - strand, within Echvi_1573 at 1809.014 kb on + strand, within Echvi_1573 at 1809.014 kb on + strand, within Echvi_1573 at 1809.124 kb on - strand, within Echvi_1573 at 1809.124 kb on - strand, within Echvi_1573 at 1809.124 kb on - strand, within Echvi_1573 at 1809.125 kb on + strand, within Echvi_1573 at 1809.126 kb on - strand, within Echvi_1573 at 1809.126 kb on - strand, within Echvi_1573 at 1809.126 kb on - strand, within Echvi_1573 at 1809.279 kb on - strand, within Echvi_1573 at 1809.322 kb on - strand, within Echvi_1573 at 1809.322 kb on - strand, within Echvi_1573 at 1809.360 kb on + strand, within Echvi_1573 at 1809.370 kb on - strand, within Echvi_1573 at 1809.385 kb on - strand, within Echvi_1573 at 1809.398 kb on - strand, within Echvi_1573 at 1809.398 kb on - strand, within Echvi_1573 at 1809.431 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.453 kb on - strand, within Echvi_1573 at 1809.492 kb on - strand, within Echvi_1573 at 1809.584 kb on - strand, within Echvi_1573 at 1809.601 kb on - strand at 1809.701 kb on + strand, within Echvi_1573 at 1809.702 kb on - strand, within Echvi_1573 at 1809.806 kb on + strand, within Echvi_1573 at 1809.806 kb on + strand, within Echvi_1573 at 1810.102 kb on + strand at 1810.102 kb on + strand at 1810.103 kb on - strand at 1810.103 kb on - strand at 1810.104 kb on + strand at 1810.105 kb on - strand at 1810.105 kb on - strand at 1810.105 kb on - strand at 1810.143 kb on + strand at 1810.191 kb on + strand at 1810.222 kb on + strand at 1810.222 kb on + strand at 1810.270 kb on - strand at 1810.309 kb on + strand at 1810.310 kb on - strand at 1810.332 kb on - strand at 1810.405 kb on + strand, within Echvi_1574 at 1810.416 kb on + strand, within Echvi_1574 at 1810.416 kb on + strand, within Echvi_1574 at 1810.443 kb on - strand, within Echvi_1574 at 1810.472 kb on + strand, within Echvi_1574 at 1810.473 kb on - strand, within Echvi_1574 at 1810.473 kb on - strand, within Echvi_1574 at 1810.489 kb on - strand, within Echvi_1574 at 1810.489 kb on - strand, within Echvi_1574 at 1810.492 kb on + strand, within Echvi_1574 at 1810.492 kb on + strand, within Echvi_1574 at 1810.492 kb on + strand, within Echvi_1574 at 1810.493 kb on - strand, within Echvi_1574 at 1810.493 kb on - strand, within Echvi_1574 at 1810.493 kb on - strand, within Echvi_1574 at 1810.527 kb on - strand, within Echvi_1574 at 1810.527 kb on - strand, within Echvi_1574 at 1810.529 kb on - strand, within Echvi_1574 at 1810.718 kb on + strand, within Echvi_1574 at 1810.719 kb on - strand, within Echvi_1574 at 1810.735 kb on + strand, within Echvi_1574 at 1810.778 kb on - strand, within Echvi_1574 at 1810.808 kb on + strand, within Echvi_1574 at 1810.808 kb on + strand, within Echvi_1574 at 1810.860 kb on + strand, within Echvi_1574 at 1810.877 kb on + strand, within Echvi_1574 at 1810.878 kb on - strand, within Echvi_1574 at 1810.878 kb on - strand, within Echvi_1574 at 1810.952 kb on + strand, within Echvi_1574 at 1810.990 kb on + strand, within Echvi_1574
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml remove 1,808,010 - Echvi_1572 0.67 +0.8 1,808,126 - Echvi_1572 0.72 -1.6 1,808,250 - Echvi_1572 0.78 +0.0 1,808,283 - Echvi_1572 0.80 +0.9 1,808,283 - Echvi_1572 0.80 +0.7 1,808,325 + Echvi_1572 0.82 +0.1 1,808,325 + Echvi_1572 0.82 -0.3 1,808,348 + Echvi_1572 0.83 +0.2 1,808,348 + Echvi_1572 0.83 -1.0 1,808,372 - Echvi_1572 0.84 -1.3 1,808,397 - Echvi_1572 0.85 -0.3 1,808,447 + Echvi_1572 0.88 +0.0 1,808,619 - +1.7 1,808,644 - +1.5 1,808,652 + +0.1 1,808,658 + -0.3 1,808,661 + +0.8 1,808,661 + +0.5 1,808,704 + -0.2 1,808,705 - +0.2 1,808,705 - -1.3 1,808,708 + +0.0 1,808,716 + -1.2 1,808,717 - +0.3 1,808,732 - +0.7 1,808,830 + -0.2 1,808,927 + Echvi_1573 0.17 -0.6 1,808,928 - Echvi_1573 0.17 -0.7 1,809,014 + Echvi_1573 0.24 -0.6 1,809,014 + Echvi_1573 0.24 +0.7 1,809,124 - Echvi_1573 0.32 -1.1 1,809,124 - Echvi_1573 0.32 -0.8 1,809,124 - Echvi_1573 0.32 +0.4 1,809,125 + Echvi_1573 0.32 -0.7 1,809,126 - Echvi_1573 0.32 +0.0 1,809,126 - Echvi_1573 0.32 +1.1 1,809,126 - Echvi_1573 0.32 -1.0 1,809,279 - Echvi_1573 0.44 -1.5 1,809,322 - Echvi_1573 0.48 -0.5 1,809,322 - Echvi_1573 0.48 +0.2 1,809,360 + Echvi_1573 0.51 -0.5 1,809,370 - Echvi_1573 0.51 +0.5 1,809,385 - Echvi_1573 0.53 +0.5 1,809,398 - Echvi_1573 0.54 -0.3 1,809,398 - Echvi_1573 0.54 -0.3 1,809,431 + Echvi_1573 0.56 -0.2 1,809,452 + Echvi_1573 0.58 +0.1 1,809,452 + Echvi_1573 0.58 -2.0 1,809,452 + Echvi_1573 0.58 -0.2 1,809,453 - Echvi_1573 0.58 +0.7 1,809,492 - Echvi_1573 0.61 +0.3 1,809,584 - Echvi_1573 0.68 -2.1 1,809,601 - +0.7 1,809,701 + Echvi_1573 0.77 -2.7 1,809,702 - Echvi_1573 0.77 -0.6 1,809,806 + Echvi_1573 0.85 +0.2 1,809,806 + Echvi_1573 0.85 -1.0 1,810,102 + +0.0 1,810,102 + -1.0 1,810,103 - -0.6 1,810,103 - -0.4 1,810,104 + -0.4 1,810,105 - -0.1 1,810,105 - -0.1 1,810,105 - +1.0 1,810,143 + +2.2 1,810,191 + -1.8 1,810,222 + -2.0 1,810,222 + -0.8 1,810,270 - -0.3 1,810,309 + -0.0 1,810,310 - -0.3 1,810,332 - -0.2 1,810,405 + Echvi_1574 0.13 -0.2 1,810,416 + Echvi_1574 0.13 +1.0 1,810,416 + Echvi_1574 0.13 -0.4 1,810,443 - Echvi_1574 0.15 +0.1 1,810,472 + Echvi_1574 0.18 -0.9 1,810,473 - Echvi_1574 0.18 +0.4 1,810,473 - Echvi_1574 0.18 -1.0 1,810,489 - Echvi_1574 0.19 +0.0 1,810,489 - Echvi_1574 0.19 -0.4 1,810,492 + Echvi_1574 0.19 -0.2 1,810,492 + Echvi_1574 0.19 -0.1 1,810,492 + Echvi_1574 0.19 +0.5 1,810,493 - Echvi_1574 0.19 -0.3 1,810,493 - Echvi_1574 0.19 +0.7 1,810,493 - Echvi_1574 0.19 +3.6 1,810,527 - Echvi_1574 0.22 +0.3 1,810,527 - Echvi_1574 0.22 +2.0 1,810,529 - Echvi_1574 0.22 -0.2 1,810,718 + Echvi_1574 0.36 -1.6 1,810,719 - Echvi_1574 0.36 -0.8 1,810,735 + Echvi_1574 0.37 +0.6 1,810,778 - Echvi_1574 0.40 +0.9 1,810,808 + Echvi_1574 0.43 +1.2 1,810,808 + Echvi_1574 0.43 +0.1 1,810,860 + Echvi_1574 0.46 +0.6 1,810,877 + Echvi_1574 0.48 +0.0 1,810,878 - Echvi_1574 0.48 -0.3 1,810,878 - Echvi_1574 0.48 +1.4 1,810,952 + Echvi_1574 0.53 -0.4 1,810,990 + Echvi_1574 0.56 -0.4
Or see this region's nucleotide sequence