Experiment: m.b. Fusidic 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1571 and Echvi_1572 are separated by 126 nucleotides Echvi_1572 and Echvi_1573 are separated by 2 nucleotides
Echvi_1571: Echvi_1571 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 1,804,018 to 1,806,471
_1571
Echvi_1572: Echvi_1572 - Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) (from data) , at 1,806,598 to 1,808,706
_1572
Echvi_1573: Echvi_1573 - L-rhamnose isomerase (EC 5.3.1.14) (from data) , at 1,808,709 to 1,809,992
_1573
Position (kb)
1806
1807
1808
1809 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1805.676 kb on + strand, within Echvi_1571 at 1805.677 kb on - strand, within Echvi_1571 at 1805.692 kb on + strand, within Echvi_1571 at 1805.755 kb on + strand, within Echvi_1571 at 1805.755 kb on + strand, within Echvi_1571 at 1805.755 kb on + strand, within Echvi_1571 at 1805.756 kb on - strand, within Echvi_1571 at 1805.756 kb on - strand, within Echvi_1571 at 1805.756 kb on - strand, within Echvi_1571 at 1805.756 kb on - strand, within Echvi_1571 at 1805.757 kb on + strand, within Echvi_1571 at 1805.757 kb on + strand, within Echvi_1571 at 1805.758 kb on - strand, within Echvi_1571 at 1805.758 kb on - strand, within Echvi_1571 at 1805.761 kb on + strand, within Echvi_1571 at 1805.762 kb on - strand, within Echvi_1571 at 1805.762 kb on - strand, within Echvi_1571 at 1805.764 kb on - strand, within Echvi_1571 at 1805.783 kb on - strand, within Echvi_1571 at 1805.836 kb on + strand, within Echvi_1571 at 1805.841 kb on + strand, within Echvi_1571 at 1805.842 kb on - strand, within Echvi_1571 at 1805.845 kb on + strand, within Echvi_1571 at 1805.845 kb on + strand, within Echvi_1571 at 1805.846 kb on - strand, within Echvi_1571 at 1805.863 kb on + strand, within Echvi_1571 at 1805.864 kb on - strand, within Echvi_1571 at 1805.866 kb on + strand, within Echvi_1571 at 1805.944 kb on - strand, within Echvi_1571 at 1805.951 kb on - strand, within Echvi_1571 at 1805.951 kb on - strand, within Echvi_1571 at 1805.982 kb on + strand, within Echvi_1571 at 1805.989 kb on + strand, within Echvi_1571 at 1805.992 kb on + strand, within Echvi_1571 at 1805.992 kb on + strand, within Echvi_1571 at 1805.993 kb on - strand, within Echvi_1571 at 1805.993 kb on - strand, within Echvi_1571 at 1805.993 kb on - strand, within Echvi_1571 at 1805.993 kb on - strand, within Echvi_1571 at 1805.994 kb on + strand, within Echvi_1571 at 1805.994 kb on + strand, within Echvi_1571 at 1805.994 kb on + strand, within Echvi_1571 at 1805.994 kb on + strand, within Echvi_1571 at 1805.994 kb on + strand, within Echvi_1571 at 1805.995 kb on - strand, within Echvi_1571 at 1805.995 kb on - strand, within Echvi_1571 at 1805.995 kb on - strand, within Echvi_1571 at 1805.995 kb on - strand, within Echvi_1571 at 1805.997 kb on + strand, within Echvi_1571 at 1805.997 kb on + strand, within Echvi_1571 at 1806.045 kb on + strand, within Echvi_1571 at 1806.045 kb on + strand, within Echvi_1571 at 1806.046 kb on - strand, within Echvi_1571 at 1806.046 kb on - strand, within Echvi_1571 at 1806.046 kb on - strand, within Echvi_1571 at 1806.046 kb on - strand, within Echvi_1571 at 1806.073 kb on + strand, within Echvi_1571 at 1806.103 kb on - strand, within Echvi_1571 at 1806.103 kb on - strand, within Echvi_1571 at 1806.127 kb on - strand, within Echvi_1571 at 1806.172 kb on + strand, within Echvi_1571 at 1806.284 kb on - strand at 1806.284 kb on - strand at 1806.284 kb on - strand at 1806.301 kb on - strand at 1806.507 kb on + strand at 1806.508 kb on - strand at 1806.529 kb on - strand at 1806.559 kb on + strand at 1806.596 kb on + strand at 1806.596 kb on + strand at 1806.596 kb on + strand at 1806.597 kb on - strand at 1806.597 kb on - strand at 1806.621 kb on + strand at 1806.630 kb on + strand at 1806.630 kb on + strand at 1806.630 kb on + strand at 1806.630 kb on + strand at 1806.631 kb on - strand at 1806.631 kb on - strand at 1806.631 kb on - strand at 1806.631 kb on - strand at 1806.631 kb on - strand at 1806.631 kb on - strand at 1806.634 kb on + strand at 1806.736 kb on + strand at 1806.736 kb on + strand at 1806.737 kb on - strand at 1806.737 kb on - strand at 1806.737 kb on - strand at 1806.750 kb on + strand at 1806.751 kb on - strand at 1806.759 kb on + strand at 1806.869 kb on - strand, within Echvi_1572 at 1806.869 kb on - strand, within Echvi_1572 at 1806.932 kb on + strand, within Echvi_1572 at 1806.932 kb on + strand, within Echvi_1572 at 1806.955 kb on + strand, within Echvi_1572 at 1806.956 kb on - strand, within Echvi_1572 at 1807.014 kb on + strand, within Echvi_1572 at 1807.234 kb on - strand, within Echvi_1572 at 1807.241 kb on - strand, within Echvi_1572 at 1807.251 kb on + strand, within Echvi_1572 at 1807.252 kb on - strand, within Echvi_1572 at 1807.252 kb on - strand, within Echvi_1572 at 1807.419 kb on + strand, within Echvi_1572 at 1807.420 kb on - strand, within Echvi_1572 at 1807.457 kb on + strand, within Echvi_1572 at 1807.458 kb on - strand, within Echvi_1572 at 1807.458 kb on - strand, within Echvi_1572 at 1807.507 kb on - strand, within Echvi_1572 at 1807.507 kb on - strand, within Echvi_1572 at 1807.639 kb on + strand, within Echvi_1572 at 1807.645 kb on - strand, within Echvi_1572 at 1807.665 kb on + strand, within Echvi_1572 at 1808.010 kb on - strand, within Echvi_1572 at 1808.126 kb on - strand, within Echvi_1572 at 1808.250 kb on - strand, within Echvi_1572 at 1808.283 kb on - strand, within Echvi_1572 at 1808.283 kb on - strand, within Echvi_1572 at 1808.325 kb on + strand, within Echvi_1572 at 1808.325 kb on + strand, within Echvi_1572 at 1808.348 kb on + strand, within Echvi_1572 at 1808.348 kb on + strand, within Echvi_1572 at 1808.372 kb on - strand, within Echvi_1572 at 1808.397 kb on - strand, within Echvi_1572 at 1808.447 kb on + strand, within Echvi_1572 at 1808.619 kb on - strand at 1808.644 kb on - strand at 1808.652 kb on + strand at 1808.658 kb on + strand at 1808.661 kb on + strand at 1808.661 kb on + strand at 1808.704 kb on + strand at 1808.705 kb on - strand at 1808.705 kb on - strand at 1808.708 kb on + strand at 1808.716 kb on + strand at 1808.717 kb on - strand at 1808.732 kb on - strand at 1808.830 kb on + strand at 1808.927 kb on + strand, within Echvi_1573 at 1808.928 kb on - strand, within Echvi_1573 at 1809.014 kb on + strand, within Echvi_1573 at 1809.014 kb on + strand, within Echvi_1573 at 1809.124 kb on - strand, within Echvi_1573 at 1809.124 kb on - strand, within Echvi_1573 at 1809.124 kb on - strand, within Echvi_1573 at 1809.125 kb on + strand, within Echvi_1573 at 1809.126 kb on - strand, within Echvi_1573 at 1809.126 kb on - strand, within Echvi_1573 at 1809.126 kb on - strand, within Echvi_1573 at 1809.279 kb on - strand, within Echvi_1573 at 1809.322 kb on - strand, within Echvi_1573 at 1809.322 kb on - strand, within Echvi_1573 at 1809.360 kb on + strand, within Echvi_1573 at 1809.370 kb on - strand, within Echvi_1573 at 1809.385 kb on - strand, within Echvi_1573 at 1809.398 kb on - strand, within Echvi_1573 at 1809.398 kb on - strand, within Echvi_1573 at 1809.431 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.452 kb on + strand, within Echvi_1573 at 1809.453 kb on - strand, within Echvi_1573 at 1809.492 kb on - strand, within Echvi_1573 at 1809.584 kb on - strand, within Echvi_1573 at 1809.601 kb on - strand at 1809.701 kb on + strand, within Echvi_1573 at 1809.702 kb on - strand, within Echvi_1573
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml remove 1,805,676 + Echvi_1571 0.68 +0.4 1,805,677 - Echvi_1571 0.68 +1.4 1,805,692 + Echvi_1571 0.68 +1.0 1,805,755 + Echvi_1571 0.71 +1.0 1,805,755 + Echvi_1571 0.71 +0.0 1,805,755 + Echvi_1571 0.71 +0.1 1,805,756 - Echvi_1571 0.71 -0.9 1,805,756 - Echvi_1571 0.71 -0.5 1,805,756 - Echvi_1571 0.71 +0.9 1,805,756 - Echvi_1571 0.71 +0.1 1,805,757 + Echvi_1571 0.71 -0.1 1,805,757 + Echvi_1571 0.71 -0.7 1,805,758 - Echvi_1571 0.71 +1.3 1,805,758 - Echvi_1571 0.71 +1.7 1,805,761 + Echvi_1571 0.71 +1.6 1,805,762 - Echvi_1571 0.71 -0.7 1,805,762 - Echvi_1571 0.71 -1.1 1,805,764 - Echvi_1571 0.71 -0.1 1,805,783 - Echvi_1571 0.72 -1.2 1,805,836 + Echvi_1571 0.74 -2.8 1,805,841 + Echvi_1571 0.74 -0.8 1,805,842 - Echvi_1571 0.74 +0.4 1,805,845 + Echvi_1571 0.74 +0.2 1,805,845 + Echvi_1571 0.74 +0.2 1,805,846 - Echvi_1571 0.74 +0.2 1,805,863 + Echvi_1571 0.75 -1.1 1,805,864 - Echvi_1571 0.75 +1.0 1,805,866 + Echvi_1571 0.75 -0.6 1,805,944 - Echvi_1571 0.78 -0.6 1,805,951 - Echvi_1571 0.79 -0.7 1,805,951 - Echvi_1571 0.79 -0.6 1,805,982 + Echvi_1571 0.80 +0.1 1,805,989 + Echvi_1571 0.80 -1.6 1,805,992 + Echvi_1571 0.80 -1.7 1,805,992 + Echvi_1571 0.80 +0.2 1,805,993 - Echvi_1571 0.80 -0.6 1,805,993 - Echvi_1571 0.80 +0.7 1,805,993 - Echvi_1571 0.80 -0.8 1,805,993 - Echvi_1571 0.80 -0.1 1,805,994 + Echvi_1571 0.81 +0.7 1,805,994 + Echvi_1571 0.81 -1.0 1,805,994 + Echvi_1571 0.81 -0.5 1,805,994 + Echvi_1571 0.81 -1.6 1,805,994 + Echvi_1571 0.81 +0.4 1,805,995 - Echvi_1571 0.81 -0.4 1,805,995 - Echvi_1571 0.81 +2.8 1,805,995 - Echvi_1571 0.81 -0.1 1,805,995 - Echvi_1571 0.81 +0.0 1,805,997 + Echvi_1571 0.81 -2.2 1,805,997 + Echvi_1571 0.81 +0.0 1,806,045 + Echvi_1571 0.83 +0.0 1,806,045 + Echvi_1571 0.83 +1.6 1,806,046 - Echvi_1571 0.83 -0.6 1,806,046 - Echvi_1571 0.83 -0.4 1,806,046 - Echvi_1571 0.83 +1.0 1,806,046 - Echvi_1571 0.83 +0.1 1,806,073 + Echvi_1571 0.84 +0.2 1,806,103 - Echvi_1571 0.85 +0.3 1,806,103 - Echvi_1571 0.85 +1.2 1,806,127 - Echvi_1571 0.86 -1.2 1,806,172 + Echvi_1571 0.88 +0.2 1,806,284 - -0.0 1,806,284 - +0.7 1,806,284 - -0.4 1,806,301 - +0.2 1,806,507 + -1.2 1,806,508 - +0.9 1,806,529 - -0.7 1,806,559 + +0.9 1,806,596 + +1.5 1,806,596 + +0.4 1,806,596 + -1.2 1,806,597 - -0.2 1,806,597 - +0.4 1,806,621 + -1.3 1,806,630 + -0.4 1,806,630 + +0.5 1,806,630 + +0.3 1,806,630 + -0.9 1,806,631 - -1.6 1,806,631 - +1.0 1,806,631 - +0.8 1,806,631 - -0.4 1,806,631 - +1.0 1,806,631 - -0.4 1,806,634 + -0.1 1,806,736 + +0.8 1,806,736 + +1.0 1,806,737 - +0.1 1,806,737 - -0.3 1,806,737 - -0.1 1,806,750 + -0.2 1,806,751 - -0.1 1,806,759 + -0.2 1,806,869 - Echvi_1572 0.13 -0.2 1,806,869 - Echvi_1572 0.13 -0.4 1,806,932 + Echvi_1572 0.16 -1.0 1,806,932 + Echvi_1572 0.16 -1.0 1,806,955 + Echvi_1572 0.17 -0.4 1,806,956 - Echvi_1572 0.17 -0.2 1,807,014 + Echvi_1572 0.20 -1.0 1,807,234 - Echvi_1572 0.30 +0.2 1,807,241 - Echvi_1572 0.30 +0.6 1,807,251 + Echvi_1572 0.31 -0.2 1,807,252 - Echvi_1572 0.31 -0.5 1,807,252 - Echvi_1572 0.31 -0.7 1,807,419 + Echvi_1572 0.39 -0.2 1,807,420 - Echvi_1572 0.39 +0.2 1,807,457 + Echvi_1572 0.41 -0.4 1,807,458 - Echvi_1572 0.41 -0.1 1,807,458 - Echvi_1572 0.41 -0.8 1,807,507 - Echvi_1572 0.43 -0.1 1,807,507 - Echvi_1572 0.43 +0.2 1,807,639 + Echvi_1572 0.49 -0.6 1,807,645 - Echvi_1572 0.50 +0.1 1,807,665 + Echvi_1572 0.51 -0.1 1,808,010 - Echvi_1572 0.67 +0.8 1,808,126 - Echvi_1572 0.72 -1.6 1,808,250 - Echvi_1572 0.78 +0.0 1,808,283 - Echvi_1572 0.80 +0.9 1,808,283 - Echvi_1572 0.80 +0.7 1,808,325 + Echvi_1572 0.82 +0.1 1,808,325 + Echvi_1572 0.82 -0.3 1,808,348 + Echvi_1572 0.83 +0.2 1,808,348 + Echvi_1572 0.83 -1.0 1,808,372 - Echvi_1572 0.84 -1.3 1,808,397 - Echvi_1572 0.85 -0.3 1,808,447 + Echvi_1572 0.88 +0.0 1,808,619 - +1.7 1,808,644 - +1.5 1,808,652 + +0.1 1,808,658 + -0.3 1,808,661 + +0.8 1,808,661 + +0.5 1,808,704 + -0.2 1,808,705 - +0.2 1,808,705 - -1.3 1,808,708 + +0.0 1,808,716 + -1.2 1,808,717 - +0.3 1,808,732 - +0.7 1,808,830 + -0.2 1,808,927 + Echvi_1573 0.17 -0.6 1,808,928 - Echvi_1573 0.17 -0.7 1,809,014 + Echvi_1573 0.24 -0.6 1,809,014 + Echvi_1573 0.24 +0.7 1,809,124 - Echvi_1573 0.32 -1.1 1,809,124 - Echvi_1573 0.32 -0.8 1,809,124 - Echvi_1573 0.32 +0.4 1,809,125 + Echvi_1573 0.32 -0.7 1,809,126 - Echvi_1573 0.32 +0.0 1,809,126 - Echvi_1573 0.32 +1.1 1,809,126 - Echvi_1573 0.32 -1.0 1,809,279 - Echvi_1573 0.44 -1.5 1,809,322 - Echvi_1573 0.48 -0.5 1,809,322 - Echvi_1573 0.48 +0.2 1,809,360 + Echvi_1573 0.51 -0.5 1,809,370 - Echvi_1573 0.51 +0.5 1,809,385 - Echvi_1573 0.53 +0.5 1,809,398 - Echvi_1573 0.54 -0.3 1,809,398 - Echvi_1573 0.54 -0.3 1,809,431 + Echvi_1573 0.56 -0.2 1,809,452 + Echvi_1573 0.58 +0.1 1,809,452 + Echvi_1573 0.58 -2.0 1,809,452 + Echvi_1573 0.58 -0.2 1,809,453 - Echvi_1573 0.58 +0.7 1,809,492 - Echvi_1573 0.61 +0.3 1,809,584 - Echvi_1573 0.68 -2.1 1,809,601 - +0.7 1,809,701 + Echvi_1573 0.77 -2.7 1,809,702 - Echvi_1573 0.77 -0.6
Or see this region's nucleotide sequence