Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0643

Experiment: m.b. Fusidic 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0642 and Echvi_0643 are separated by 27 nucleotidesEchvi_0643 and Echvi_0644 are separated by 62 nucleotidesEchvi_0644 and Echvi_0645 are separated by 6 nucleotides Echvi_0642: Echvi_0642 - pseudouridine synthase, RluA family, at 726,059 to 727,153 _0642 Echvi_0643: Echvi_0643 - 1-aminocyclopropane-1-carboxylate deaminase, at 727,181 to 728,110 _0643 Echvi_0644: Echvi_0644 - hypothetical protein, at 728,173 to 728,682 _0644 Echvi_0645: Echvi_0645 - Uncharacterized protein conserved in bacteria, at 728,689 to 729,291 _0645 Position (kb) 727 728 729Strain fitness (log2 ratio) -2 -1 0 1 2 3at 726.208 kb on + strand, within Echvi_0642at 726.209 kb on - strand, within Echvi_0642at 726.235 kb on - strand, within Echvi_0642at 726.309 kb on + strand, within Echvi_0642at 726.375 kb on + strandat 726.376 kb on - strandat 726.376 kb on - strand, within Echvi_0642at 726.418 kb on + strand, within Echvi_0642at 726.440 kb on + strand, within Echvi_0642at 726.532 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.735 kb on + strand, within Echvi_0642at 726.827 kb on + strand, within Echvi_0642at 726.827 kb on + strand, within Echvi_0642at 726.827 kb on + strand, within Echvi_0642at 726.828 kb on - strand, within Echvi_0642at 726.854 kb on + strand, within Echvi_0642at 726.889 kb on + strand, within Echvi_0642at 726.923 kb on - strand, within Echvi_0642at 727.031 kb on + strand, within Echvi_0642at 727.032 kb on - strand, within Echvi_0642at 727.036 kb on + strand, within Echvi_0642at 727.036 kb on + strand, within Echvi_0642at 727.036 kb on + strand, within Echvi_0642at 727.047 kb on + strandat 727.146 kb on - strandat 727.185 kb on + strandat 727.185 kb on + strandat 727.317 kb on - strand, within Echvi_0643at 727.325 kb on - strand, within Echvi_0643at 727.328 kb on + strand, within Echvi_0643at 727.368 kb on + strand, within Echvi_0643at 727.399 kb on + strand, within Echvi_0643at 727.400 kb on - strand, within Echvi_0643at 727.400 kb on - strand, within Echvi_0643at 727.604 kb on + strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.691 kb on - strand, within Echvi_0643at 727.691 kb on - strand, within Echvi_0643at 727.975 kb on - strand, within Echvi_0643at 727.975 kb on - strand, within Echvi_0643at 727.997 kb on - strand, within Echvi_0643at 727.999 kb on + strand, within Echvi_0643at 727.999 kb on + strand, within Echvi_0643at 728.064 kb on + strandat 728.064 kb on + strandat 728.065 kb on - strandat 728.065 kb on - strandat 728.065 kb on - strandat 728.113 kb on + strandat 728.157 kb on + strandat 728.158 kb on - strandat 728.162 kb on + strandat 728.226 kb on - strand, within Echvi_0644at 728.277 kb on - strand, within Echvi_0644at 728.277 kb on - strand, within Echvi_0644at 728.340 kb on + strand, within Echvi_0644at 728.481 kb on + strand, within Echvi_0644at 728.481 kb on + strand, within Echvi_0644at 728.482 kb on - strand, within Echvi_0644at 728.482 kb on - strand, within Echvi_0644at 728.483 kb on + strand, within Echvi_0644at 728.576 kb on - strand, within Echvi_0644at 728.616 kb on + strand, within Echvi_0644at 728.617 kb on - strand, within Echvi_0644at 728.682 kb on + strandat 728.721 kb on + strandat 728.748 kb on + strandat 728.748 kb on + strandat 728.749 kb on - strandat 728.749 kb on - strandat 728.790 kb on - strand, within Echvi_0645at 728.859 kb on + strand, within Echvi_0645at 728.860 kb on - strand, within Echvi_0645at 728.860 kb on - strand, within Echvi_0645at 728.866 kb on + strand, within Echvi_0645at 728.867 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 729.019 kb on + strand, within Echvi_0645at 729.020 kb on - strand, within Echvi_0645at 729.023 kb on + strand, within Echvi_0645at 729.024 kb on - strand, within Echvi_0645at 729.060 kb on - strand, within Echvi_0645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml
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726,208 + Echvi_0642 0.14 +2.0
726,209 - Echvi_0642 0.14 +1.0
726,235 - Echvi_0642 0.16 -0.9
726,309 + Echvi_0642 0.23 +0.6
726,375 + +3.6
726,376 - +1.0
726,376 - Echvi_0642 0.29 -0.7
726,418 + Echvi_0642 0.33 -0.3
726,440 + Echvi_0642 0.35 +0.5
726,532 + Echvi_0642 0.43 +1.1
726,534 + Echvi_0642 0.43 +0.7
726,534 + Echvi_0642 0.43 +1.0
726,534 + Echvi_0642 0.43 +0.5
726,534 + Echvi_0642 0.43 +0.0
726,534 + Echvi_0642 0.43 +1.0
726,735 + Echvi_0642 0.62 +0.3
726,827 + Echvi_0642 0.70 +2.3
726,827 + Echvi_0642 0.70 -0.2
726,827 + Echvi_0642 0.70 +1.5
726,828 - Echvi_0642 0.70 +1.0
726,854 + Echvi_0642 0.73 -0.3
726,889 + Echvi_0642 0.76 +2.0
726,923 - Echvi_0642 0.79 -0.1
727,031 + Echvi_0642 0.89 -0.7
727,032 - Echvi_0642 0.89 -0.0
727,036 + Echvi_0642 0.89 +2.5
727,036 + Echvi_0642 0.89 -2.0
727,036 + Echvi_0642 0.89 +1.5
727,047 + -1.1
727,146 - -0.4
727,185 + +0.2
727,185 + +0.1
727,317 - Echvi_0643 0.15 +0.2
727,325 - Echvi_0643 0.15 +0.3
727,328 + Echvi_0643 0.16 -1.9
727,368 + Echvi_0643 0.20 -0.6
727,399 + Echvi_0643 0.23 -2.2
727,400 - Echvi_0643 0.24 +0.7
727,400 - Echvi_0643 0.24 +0.2
727,604 + Echvi_0643 0.45 -0.8
727,649 - Echvi_0643 0.50 -1.0
727,649 - Echvi_0643 0.50 -0.3
727,649 - Echvi_0643 0.50 -0.7
727,691 - Echvi_0643 0.55 +0.2
727,691 - Echvi_0643 0.55 -0.5
727,975 - Echvi_0643 0.85 -0.3
727,975 - Echvi_0643 0.85 +0.1
727,997 - Echvi_0643 0.88 +1.0
727,999 + Echvi_0643 0.88 -2.3
727,999 + Echvi_0643 0.88 +0.0
728,064 + +1.7
728,064 + -0.1
728,065 - +0.8
728,065 - +0.3
728,065 - -0.0
728,113 + +1.0
728,157 + +1.4
728,158 - -0.3
728,162 + +0.9
728,226 - Echvi_0644 0.10 +0.2
728,277 - Echvi_0644 0.20 +0.2
728,277 - Echvi_0644 0.20 +0.1
728,340 + Echvi_0644 0.33 +1.0
728,481 + Echvi_0644 0.60 -1.6
728,481 + Echvi_0644 0.60 -0.7
728,482 - Echvi_0644 0.61 -0.7
728,482 - Echvi_0644 0.61 -1.3
728,483 + Echvi_0644 0.61 +0.4
728,576 - Echvi_0644 0.79 +1.7
728,616 + Echvi_0644 0.87 +0.0
728,617 - Echvi_0644 0.87 -0.9
728,682 + -0.0
728,721 + -0.2
728,748 + +0.8
728,748 + +0.5
728,749 - -0.6
728,749 - -0.5
728,790 - Echvi_0645 0.17 +0.2
728,859 + Echvi_0645 0.28 +0.2
728,860 - Echvi_0645 0.28 +1.2
728,860 - Echvi_0645 0.28 +0.2
728,866 + Echvi_0645 0.29 +0.8
728,867 - Echvi_0645 0.30 -0.4
728,934 - Echvi_0645 0.41 +1.7
728,934 - Echvi_0645 0.41 +0.4
728,934 - Echvi_0645 0.41 +0.7
728,934 - Echvi_0645 0.41 -0.5
728,934 - Echvi_0645 0.41 +2.0
728,934 - Echvi_0645 0.41 +0.0
729,019 + Echvi_0645 0.55 +0.4
729,020 - Echvi_0645 0.55 -0.2
729,023 + Echvi_0645 0.55 +0.4
729,024 - Echvi_0645 0.56 -0.5
729,060 - Echvi_0645 0.62 -0.3

Or see this region's nucleotide sequence