Experiment: m.b. Fusidic 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0602 and Echvi_0603 overlap by 20 nucleotides Echvi_0603 and Echvi_0604 are separated by 221 nucleotides Echvi_0604 and Echvi_0605 are separated by 68 nucleotides
Echvi_0602: Echvi_0602 - hypothetical protein, at 678,733 to 680,112
_0602
Echvi_0603: Echvi_0603 - RNA polymerase sigma factor, sigma-70 family, at 680,093 to 680,641
_0603
Echvi_0604: Echvi_0604 - Predicted redox protein, regulator of disulfide bond formation, at 680,863 to 681,267
_0604
Echvi_0605: Echvi_0605 - hypothetical protein, at 681,336 to 682,067
_0605
Position (kb) 680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 679.345 kb on + strand, within Echvi_0602 at 680.117 kb on + strand at 680.126 kb on + strand at 680.126 kb on + strand at 680.172 kb on + strand, within Echvi_0603 at 680.173 kb on - strand, within Echvi_0603 at 680.227 kb on + strand, within Echvi_0603 at 680.227 kb on + strand, within Echvi_0603 at 680.228 kb on - strand, within Echvi_0603 at 680.228 kb on - strand, within Echvi_0603 at 680.229 kb on + strand, within Echvi_0603 at 680.229 kb on + strand, within Echvi_0603 at 680.229 kb on + strand, within Echvi_0603 at 680.230 kb on - strand, within Echvi_0603 at 680.230 kb on - strand, within Echvi_0603 at 680.248 kb on + strand, within Echvi_0603 at 680.248 kb on + strand, within Echvi_0603 at 680.248 kb on + strand, within Echvi_0603 at 680.249 kb on - strand, within Echvi_0603 at 680.260 kb on + strand, within Echvi_0603 at 680.261 kb on - strand, within Echvi_0603 at 680.337 kb on + strand, within Echvi_0603 at 680.385 kb on - strand, within Echvi_0603 at 680.385 kb on - strand, within Echvi_0603 at 680.401 kb on - strand, within Echvi_0603 at 680.413 kb on + strand, within Echvi_0603 at 680.414 kb on - strand, within Echvi_0603 at 680.472 kb on - strand, within Echvi_0603 at 680.492 kb on - strand, within Echvi_0603 at 680.498 kb on - strand, within Echvi_0603 at 680.557 kb on + strand, within Echvi_0603 at 680.557 kb on + strand, within Echvi_0603 at 680.558 kb on - strand, within Echvi_0603 at 680.568 kb on + strand, within Echvi_0603 at 680.568 kb on + strand, within Echvi_0603 at 680.578 kb on + strand, within Echvi_0603 at 680.605 kb on + strand at 680.631 kb on + strand at 680.631 kb on + strand at 680.631 kb on + strand at 680.631 kb on + strand at 680.654 kb on + strand at 680.654 kb on + strand at 680.661 kb on + strand at 680.661 kb on + strand at 680.662 kb on - strand at 680.662 kb on - strand at 680.672 kb on - strand at 680.686 kb on - strand at 680.700 kb on - strand at 680.700 kb on - strand at 680.712 kb on - strand at 680.734 kb on + strand at 680.766 kb on - strand at 680.790 kb on + strand at 680.790 kb on + strand at 680.791 kb on - strand at 680.843 kb on + strand at 680.843 kb on + strand at 681.022 kb on - strand, within Echvi_0604 at 681.061 kb on - strand, within Echvi_0604 at 681.086 kb on - strand, within Echvi_0604 at 681.131 kb on - strand, within Echvi_0604 at 681.259 kb on - strand at 681.259 kb on - strand at 681.262 kb on - strand at 681.295 kb on + strand at 681.296 kb on - strand at 681.296 kb on - strand at 681.300 kb on + strand at 681.300 kb on + strand at 681.300 kb on + strand at 681.300 kb on + strand at 681.300 kb on + strand at 681.300 kb on + strand at 681.301 kb on - strand at 681.321 kb on - strand at 681.328 kb on + strand at 681.335 kb on + strand at 681.335 kb on + strand at 681.354 kb on + strand at 681.394 kb on + strand at 681.423 kb on + strand, within Echvi_0605 at 681.424 kb on - strand, within Echvi_0605 at 681.455 kb on - strand, within Echvi_0605 at 681.490 kb on + strand, within Echvi_0605 at 681.491 kb on - strand, within Echvi_0605 at 681.492 kb on + strand, within Echvi_0605 at 681.492 kb on + strand, within Echvi_0605 at 681.492 kb on + strand, within Echvi_0605 at 681.493 kb on - strand, within Echvi_0605 at 681.583 kb on - strand, within Echvi_0605 at 681.583 kb on - strand, within Echvi_0605 at 681.584 kb on + strand, within Echvi_0605 at 681.627 kb on + strand, within Echvi_0605 at 681.628 kb on - strand, within Echvi_0605 at 681.635 kb on + strand, within Echvi_0605 at 681.636 kb on - strand, within Echvi_0605 at 681.636 kb on - strand, within Echvi_0605 at 681.636 kb on - strand, within Echvi_0605
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml remove 679,345 + Echvi_0602 0.44 +2.7 680,117 + +0.0 680,126 + -3.5 680,126 + -0.7 680,172 + Echvi_0603 0.14 -0.7 680,173 - Echvi_0603 0.15 +0.4 680,227 + Echvi_0603 0.24 +2.6 680,227 + Echvi_0603 0.24 -1.8 680,228 - Echvi_0603 0.25 +0.0 680,228 - Echvi_0603 0.25 -0.2 680,229 + Echvi_0603 0.25 -0.7 680,229 + Echvi_0603 0.25 -0.3 680,229 + Echvi_0603 0.25 -0.8 680,230 - Echvi_0603 0.25 -0.1 680,230 - Echvi_0603 0.25 -0.6 680,248 + Echvi_0603 0.28 +0.9 680,248 + Echvi_0603 0.28 -0.0 680,248 + Echvi_0603 0.28 +0.2 680,249 - Echvi_0603 0.28 -0.1 680,260 + Echvi_0603 0.30 +1.2 680,261 - Echvi_0603 0.31 +0.9 680,337 + Echvi_0603 0.44 +0.4 680,385 - Echvi_0603 0.53 +0.8 680,385 - Echvi_0603 0.53 -0.3 680,401 - Echvi_0603 0.56 +1.2 680,413 + Echvi_0603 0.58 +2.0 680,414 - Echvi_0603 0.58 +1.0 680,472 - Echvi_0603 0.69 +0.6 680,492 - Echvi_0603 0.73 -0.1 680,498 - Echvi_0603 0.74 -0.3 680,557 + Echvi_0603 0.85 +0.0 680,557 + Echvi_0603 0.85 +1.0 680,558 - Echvi_0603 0.85 -0.1 680,568 + Echvi_0603 0.87 +0.4 680,568 + Echvi_0603 0.87 +0.8 680,578 + Echvi_0603 0.88 -0.3 680,605 + -1.3 680,631 + +0.1 680,631 + +1.2 680,631 + -0.1 680,631 + -0.0 680,654 + -1.4 680,654 + -0.6 680,661 + -0.8 680,661 + -0.8 680,662 - +0.5 680,662 - -0.9 680,672 - +0.3 680,686 - +1.2 680,700 - +1.3 680,700 - +0.0 680,712 - +0.8 680,734 + -0.1 680,766 - -0.3 680,790 + +0.4 680,790 + +1.0 680,791 - -0.4 680,843 + +1.1 680,843 + -0.4 681,022 - Echvi_0604 0.39 -0.9 681,061 - Echvi_0604 0.49 +1.6 681,086 - Echvi_0604 0.55 +0.3 681,131 - Echvi_0604 0.66 -0.4 681,259 - +0.5 681,259 - -1.3 681,262 - -1.1 681,295 + +0.5 681,296 - -0.1 681,296 - +1.3 681,300 + +1.0 681,300 + -0.1 681,300 + -0.5 681,300 + +0.0 681,300 + -0.8 681,300 + -0.7 681,301 - +1.6 681,321 - +0.7 681,328 + +0.0 681,335 + -0.7 681,335 + +0.0 681,354 + +0.7 681,394 + +0.6 681,423 + Echvi_0605 0.12 +3.4 681,424 - Echvi_0605 0.12 -0.6 681,455 - Echvi_0605 0.16 +0.2 681,490 + Echvi_0605 0.21 +0.0 681,491 - Echvi_0605 0.21 -1.1 681,492 + Echvi_0605 0.21 -0.3 681,492 + Echvi_0605 0.21 +0.4 681,492 + Echvi_0605 0.21 +0.0 681,493 - Echvi_0605 0.21 -1.4 681,583 - Echvi_0605 0.34 -0.0 681,583 - Echvi_0605 0.34 -0.2 681,584 + Echvi_0605 0.34 -1.4 681,627 + Echvi_0605 0.40 +1.0 681,628 - Echvi_0605 0.40 -2.6 681,635 + Echvi_0605 0.41 -0.4 681,636 - Echvi_0605 0.41 -2.2 681,636 - Echvi_0605 0.41 +0.2 681,636 - Echvi_0605 0.41 +0.3
Or see this region's nucleotide sequence