Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0495

Experiment: m.b. Fusidic 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0494 and Echvi_0495 are separated by 72 nucleotidesEchvi_0495 and Echvi_0496 are separated by 18 nucleotides Echvi_0494: Echvi_0494 - hypothetical protein, at 550,082 to 551,230 _0494 Echvi_0495: Echvi_0495 - Beta-xylosidase, at 551,303 to 552,301 _0495 Echvi_0496: Echvi_0496 - Beta-xylosidase, at 552,320 to 553,318 _0496 Position (kb) 551 552 553Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 550.458 kb on + strand, within Echvi_0494at 550.459 kb on - strand, within Echvi_0494at 550.459 kb on - strand, within Echvi_0494at 550.499 kb on + strand, within Echvi_0494at 550.501 kb on + strand, within Echvi_0494at 550.502 kb on - strand, within Echvi_0494at 550.521 kb on - strand, within Echvi_0494at 550.521 kb on - strand, within Echvi_0494at 550.583 kb on - strand, within Echvi_0494at 550.583 kb on - strand, within Echvi_0494at 550.616 kb on + strand, within Echvi_0494at 550.617 kb on - strand, within Echvi_0494at 550.631 kb on - strand, within Echvi_0494at 550.641 kb on - strand, within Echvi_0494at 550.650 kb on - strand, within Echvi_0494at 550.653 kb on + strand, within Echvi_0494at 550.653 kb on + strand, within Echvi_0494at 550.653 kb on + strand, within Echvi_0494at 550.654 kb on - strand, within Echvi_0494at 550.703 kb on + strand, within Echvi_0494at 550.744 kb on + strand, within Echvi_0494at 550.745 kb on - strand, within Echvi_0494at 550.810 kb on + strand, within Echvi_0494at 550.832 kb on + strandat 550.833 kb on - strand, within Echvi_0494at 550.865 kb on - strand, within Echvi_0494at 550.876 kb on + strand, within Echvi_0494at 550.983 kb on + strand, within Echvi_0494at 550.986 kb on - strand, within Echvi_0494at 550.986 kb on - strand, within Echvi_0494at 551.074 kb on + strand, within Echvi_0494at 551.150 kb on - strandat 551.215 kb on + strandat 551.216 kb on - strandat 551.218 kb on - strandat 551.218 kb on - strandat 551.218 kb on - strandat 551.218 kb on - strandat 551.218 kb on - strandat 551.256 kb on + strandat 551.256 kb on + strandat 551.256 kb on + strandat 551.259 kb on - strandat 551.259 kb on - strandat 551.302 kb on - strandat 551.304 kb on + strandat 551.308 kb on + strandat 551.308 kb on + strandat 551.309 kb on - strandat 551.318 kb on + strandat 551.319 kb on - strandat 551.362 kb on + strandat 551.541 kb on + strand, within Echvi_0495at 551.541 kb on + strand, within Echvi_0495at 551.684 kb on + strand, within Echvi_0495at 551.687 kb on + strand, within Echvi_0495at 551.687 kb on + strand, within Echvi_0495at 551.688 kb on - strand, within Echvi_0495at 551.785 kb on + strand, within Echvi_0495at 551.787 kb on + strand, within Echvi_0495at 551.787 kb on + strand, within Echvi_0495at 551.788 kb on - strand, within Echvi_0495at 551.788 kb on - strand, within Echvi_0495at 551.900 kb on + strand, within Echvi_0495at 551.900 kb on + strand, within Echvi_0495at 551.900 kb on + strand, within Echvi_0495at 551.901 kb on - strand, within Echvi_0495at 551.901 kb on - strand, within Echvi_0495at 551.982 kb on + strand, within Echvi_0495at 551.983 kb on - strand, within Echvi_0495at 551.986 kb on - strand, within Echvi_0495at 551.986 kb on - strand, within Echvi_0495at 551.995 kb on + strand, within Echvi_0495at 551.997 kb on + strand, within Echvi_0495at 551.997 kb on + strand, within Echvi_0495at 551.997 kb on + strand, within Echvi_0495at 551.998 kb on - strand, within Echvi_0495at 552.133 kb on + strand, within Echvi_0495at 552.133 kb on + strand, within Echvi_0495at 552.134 kb on - strand, within Echvi_0495at 552.134 kb on - strand, within Echvi_0495at 552.134 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.138 kb on + strand, within Echvi_0495at 552.138 kb on + strand, within Echvi_0495at 552.139 kb on - strand, within Echvi_0495at 552.139 kb on - strand, within Echvi_0495at 552.139 kb on - strand, within Echvi_0495at 552.164 kb on + strand, within Echvi_0495at 552.166 kb on + strand, within Echvi_0495at 552.167 kb on - strand, within Echvi_0495at 552.324 kb on + strandat 552.324 kb on + strandat 552.325 kb on - strandat 552.387 kb on + strandat 552.453 kb on + strand, within Echvi_0496at 552.453 kb on + strand, within Echvi_0496at 552.453 kb on + strand, within Echvi_0496at 552.454 kb on - strand, within Echvi_0496at 552.462 kb on + strand, within Echvi_0496at 552.463 kb on - strand, within Echvi_0496at 552.476 kb on - strand, within Echvi_0496at 552.502 kb on + strand, within Echvi_0496at 552.571 kb on + strand, within Echvi_0496at 552.572 kb on - strand, within Echvi_0496at 552.577 kb on - strand, within Echvi_0496at 552.618 kb on + strand, within Echvi_0496at 552.618 kb on + strand, within Echvi_0496at 552.618 kb on + strand, within Echvi_0496at 552.619 kb on - strand, within Echvi_0496at 552.619 kb on - strand, within Echvi_0496at 552.620 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.710 kb on - strand, within Echvi_0496at 552.710 kb on - strand, within Echvi_0496at 552.718 kb on + strand, within Echvi_0496at 552.719 kb on - strand, within Echvi_0496at 552.729 kb on + strand, within Echvi_0496at 552.730 kb on - strand, within Echvi_0496at 552.730 kb on - strand, within Echvi_0496at 552.732 kb on + strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.929 kb on - strand, within Echvi_0496at 552.929 kb on - strand, within Echvi_0496at 552.930 kb on + strand, within Echvi_0496at 552.930 kb on + strand, within Echvi_0496at 552.931 kb on - strand, within Echvi_0496at 552.931 kb on - strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.937 kb on - strand, within Echvi_0496at 552.939 kb on + strand, within Echvi_0496at 552.940 kb on - strand, within Echvi_0496at 552.943 kb on + strand, within Echvi_0496at 552.944 kb on - strand, within Echvi_0496at 552.944 kb on - strand, within Echvi_0496at 552.972 kb on + strand, within Echvi_0496at 552.973 kb on - strand, within Echvi_0496at 553.081 kb on + strand, within Echvi_0496at 553.082 kb on - strand, within Echvi_0496at 553.119 kb on + strand, within Echvi_0496at 553.167 kb on + strand, within Echvi_0496at 553.167 kb on + strand, within Echvi_0496at 553.167 kb on + strand, within Echvi_0496at 553.168 kb on - strand, within Echvi_0496at 553.212 kb on + strand, within Echvi_0496at 553.212 kb on + strand, within Echvi_0496at 553.212 kb on + strand, within Echvi_0496at 553.213 kb on - strand, within Echvi_0496at 553.213 kb on - strand, within Echvi_0496at 553.233 kb on + strandat 553.234 kb on - strandat 553.234 kb on - strandat 553.234 kb on - strandat 553.268 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml
remove
550,458 + Echvi_0494 0.33 +0.4
550,459 - Echvi_0494 0.33 +0.1
550,459 - Echvi_0494 0.33 -0.7
550,499 + Echvi_0494 0.36 +2.0
550,501 + Echvi_0494 0.36 -0.2
550,502 - Echvi_0494 0.37 +0.7
550,521 - Echvi_0494 0.38 +0.8
550,521 - Echvi_0494 0.38 +0.1
550,583 - Echvi_0494 0.44 +0.3
550,583 - Echvi_0494 0.44 +0.6
550,616 + Echvi_0494 0.46 +0.7
550,617 - Echvi_0494 0.47 -0.3
550,631 - Echvi_0494 0.48 -1.3
550,641 - Echvi_0494 0.49 +1.2
550,650 - Echvi_0494 0.49 -0.0
550,653 + Echvi_0494 0.50 +0.1
550,653 + Echvi_0494 0.50 -0.1
550,653 + Echvi_0494 0.50 +0.0
550,654 - Echvi_0494 0.50 +0.4
550,703 + Echvi_0494 0.54 -0.8
550,744 + Echvi_0494 0.58 +0.3
550,745 - Echvi_0494 0.58 -1.2
550,810 + Echvi_0494 0.63 -0.3
550,832 + +2.0
550,833 - Echvi_0494 0.65 +0.5
550,865 - Echvi_0494 0.68 -1.1
550,876 + Echvi_0494 0.69 +1.3
550,983 + Echvi_0494 0.78 +2.7
550,986 - Echvi_0494 0.79 +0.3
550,986 - Echvi_0494 0.79 -0.4
551,074 + Echvi_0494 0.86 +0.1
551,150 - -0.0
551,215 + +0.6
551,216 - +1.2
551,218 - -1.3
551,218 - -0.6
551,218 - -0.4
551,218 - -1.3
551,218 - -1.1
551,256 + +1.0
551,256 + -1.1
551,256 + -2.5
551,259 - +1.1
551,259 - -1.3
551,302 - +0.3
551,304 + -3.1
551,308 + -0.8
551,308 + +0.8
551,309 - -0.6
551,318 + -2.4
551,319 - -1.8
551,362 + -0.8
551,541 + Echvi_0495 0.24 -0.4
551,541 + Echvi_0495 0.24 +2.0
551,684 + Echvi_0495 0.38 -0.5
551,687 + Echvi_0495 0.38 +0.4
551,687 + Echvi_0495 0.38 -0.5
551,688 - Echvi_0495 0.39 -0.9
551,785 + Echvi_0495 0.48 -0.2
551,787 + Echvi_0495 0.48 -0.7
551,787 + Echvi_0495 0.48 -0.8
551,788 - Echvi_0495 0.49 +0.4
551,788 - Echvi_0495 0.49 -1.7
551,900 + Echvi_0495 0.60 +0.7
551,900 + Echvi_0495 0.60 -0.5
551,900 + Echvi_0495 0.60 -0.3
551,901 - Echvi_0495 0.60 -0.6
551,901 - Echvi_0495 0.60 +0.3
551,982 + Echvi_0495 0.68 -0.8
551,983 - Echvi_0495 0.68 -0.8
551,986 - Echvi_0495 0.68 -0.0
551,986 - Echvi_0495 0.68 +0.8
551,995 + Echvi_0495 0.69 -0.1
551,997 + Echvi_0495 0.69 -0.1
551,997 + Echvi_0495 0.69 +0.3
551,997 + Echvi_0495 0.69 -1.3
551,998 - Echvi_0495 0.70 -0.5
552,133 + Echvi_0495 0.83 +0.3
552,133 + Echvi_0495 0.83 -0.7
552,134 - Echvi_0495 0.83 -1.3
552,134 - Echvi_0495 0.83 -2.5
552,134 - Echvi_0495 0.83 -0.6
552,136 - Echvi_0495 0.83 -1.0
552,136 - Echvi_0495 0.83 +0.2
552,136 - Echvi_0495 0.83 +0.3
552,136 - Echvi_0495 0.83 -0.5
552,136 - Echvi_0495 0.83 -0.5
552,136 - Echvi_0495 0.83 +0.5
552,138 + Echvi_0495 0.84 +1.4
552,138 + Echvi_0495 0.84 +1.0
552,139 - Echvi_0495 0.84 -1.3
552,139 - Echvi_0495 0.84 +0.3
552,139 - Echvi_0495 0.84 -0.8
552,164 + Echvi_0495 0.86 +0.8
552,166 + Echvi_0495 0.86 +0.1
552,167 - Echvi_0495 0.86 -1.2
552,324 + -1.1
552,324 + +0.6
552,325 - -0.1
552,387 + +0.3
552,453 + Echvi_0496 0.13 -1.0
552,453 + Echvi_0496 0.13 +0.3
552,453 + Echvi_0496 0.13 +0.6
552,454 - Echvi_0496 0.13 -0.1
552,462 + Echvi_0496 0.14 -1.0
552,463 - Echvi_0496 0.14 +0.1
552,476 - Echvi_0496 0.16 +0.2
552,502 + Echvi_0496 0.18 +0.1
552,571 + Echvi_0496 0.25 -0.4
552,572 - Echvi_0496 0.25 +0.3
552,577 - Echvi_0496 0.26 -0.9
552,618 + Echvi_0496 0.30 -0.4
552,618 + Echvi_0496 0.30 +0.5
552,618 + Echvi_0496 0.30 -0.6
552,619 - Echvi_0496 0.30 -1.2
552,619 - Echvi_0496 0.30 -0.5
552,620 + Echvi_0496 0.30 -0.5
552,709 + Echvi_0496 0.39 +0.9
552,709 + Echvi_0496 0.39 -1.3
552,709 + Echvi_0496 0.39 -0.8
552,709 + Echvi_0496 0.39 +0.5
552,710 - Echvi_0496 0.39 -1.0
552,710 - Echvi_0496 0.39 -0.0
552,718 + Echvi_0496 0.40 +0.2
552,719 - Echvi_0496 0.40 -0.0
552,729 + Echvi_0496 0.41 -0.1
552,730 - Echvi_0496 0.41 -2.1
552,730 - Echvi_0496 0.41 +0.8
552,732 + Echvi_0496 0.41 +1.4
552,733 - Echvi_0496 0.41 +1.2
552,733 - Echvi_0496 0.41 -0.3
552,733 - Echvi_0496 0.41 -0.1
552,733 - Echvi_0496 0.41 -0.2
552,929 - Echvi_0496 0.61 -0.1
552,929 - Echvi_0496 0.61 +1.4
552,930 + Echvi_0496 0.61 -0.6
552,930 + Echvi_0496 0.61 -0.7
552,931 - Echvi_0496 0.61 +0.7
552,931 - Echvi_0496 0.61 +0.1
552,936 + Echvi_0496 0.62 +1.0
552,936 + Echvi_0496 0.62 -0.1
552,936 + Echvi_0496 0.62 +1.1
552,936 + Echvi_0496 0.62 +1.1
552,936 + Echvi_0496 0.62 -2.1
552,936 + Echvi_0496 0.62 -1.4
552,937 - Echvi_0496 0.62 +0.3
552,939 + Echvi_0496 0.62 -0.6
552,940 - Echvi_0496 0.62 +0.4
552,943 + Echvi_0496 0.62 +0.7
552,944 - Echvi_0496 0.62 -0.9
552,944 - Echvi_0496 0.62 +0.1
552,972 + Echvi_0496 0.65 -0.5
552,973 - Echvi_0496 0.65 +0.1
553,081 + Echvi_0496 0.76 +0.5
553,082 - Echvi_0496 0.76 +0.3
553,119 + Echvi_0496 0.80 -0.0
553,167 + Echvi_0496 0.85 -0.5
553,167 + Echvi_0496 0.85 +0.4
553,167 + Echvi_0496 0.85 -1.0
553,168 - Echvi_0496 0.85 +1.2
553,212 + Echvi_0496 0.89 -1.2
553,212 + Echvi_0496 0.89 +0.4
553,212 + Echvi_0496 0.89 -0.4
553,213 - Echvi_0496 0.89 +0.2
553,213 - Echvi_0496 0.89 -0.4
553,233 + +0.5
553,234 - -1.3
553,234 - -2.1
553,234 - -1.3
553,268 - -0.2

Or see this region's nucleotide sequence