Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0445

Experiment: m.b. Fusidic 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0444 and Echvi_0445 are separated by 46 nucleotidesEchvi_0445 and Echvi_0446 are separated by 597 nucleotides Echvi_0444: Echvi_0444 - Superfamily II DNA/RNA helicases, SNF2 family, at 483,614 to 487,027 _0444 Echvi_0445: Echvi_0445 - HEPN domain., at 487,074 to 488,786 _0445 Echvi_0446: Echvi_0446 - hypothetical protein, at 489,384 to 490,346 _0446 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2 3at 486.113 kb on - strand, within Echvi_0444at 486.137 kb on + strand, within Echvi_0444at 486.137 kb on + strand, within Echvi_0444at 486.138 kb on - strand, within Echvi_0444at 486.139 kb on + strand, within Echvi_0444at 486.140 kb on - strand, within Echvi_0444at 486.163 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.348 kb on - strand, within Echvi_0444at 486.401 kb on + strand, within Echvi_0444at 486.402 kb on - strand, within Echvi_0444at 486.572 kb on - strand, within Echvi_0444at 486.573 kb on + strand, within Echvi_0444at 486.573 kb on + strand, within Echvi_0444at 486.574 kb on - strand, within Echvi_0444at 486.602 kb on - strand, within Echvi_0444at 486.604 kb on + strand, within Echvi_0444at 486.605 kb on - strand, within Echvi_0444at 486.605 kb on - strand, within Echvi_0444at 486.605 kb on - strand, within Echvi_0444at 486.613 kb on - strand, within Echvi_0444at 486.617 kb on + strand, within Echvi_0444at 486.617 kb on + strand, within Echvi_0444at 486.625 kb on - strand, within Echvi_0444at 486.625 kb on - strand, within Echvi_0444at 486.673 kb on - strand, within Echvi_0444at 486.694 kb on - strandat 486.694 kb on - strandat 486.694 kb on - strandat 486.704 kb on + strandat 486.723 kb on + strandat 486.723 kb on + strandat 486.726 kb on + strandat 486.727 kb on - strandat 486.727 kb on - strandat 486.727 kb on - strandat 487.013 kb on - strandat 487.027 kb on + strandat 487.028 kb on - strandat 487.038 kb on - strandat 487.101 kb on + strandat 487.102 kb on - strandat 487.204 kb on + strandat 487.320 kb on + strand, within Echvi_0445at 487.358 kb on + strand, within Echvi_0445at 487.361 kb on - strand, within Echvi_0445at 487.370 kb on - strand, within Echvi_0445at 487.370 kb on - strand, within Echvi_0445at 487.376 kb on - strand, within Echvi_0445at 487.466 kb on - strand, within Echvi_0445at 487.529 kb on - strand, within Echvi_0445at 487.548 kb on - strand, within Echvi_0445at 487.704 kb on - strand, within Echvi_0445at 487.759 kb on + strand, within Echvi_0445at 487.760 kb on - strand, within Echvi_0445at 487.760 kb on - strand, within Echvi_0445at 487.760 kb on - strand, within Echvi_0445at 487.827 kb on - strand, within Echvi_0445at 487.837 kb on + strand, within Echvi_0445at 487.837 kb on + strand, within Echvi_0445at 487.838 kb on - strand, within Echvi_0445at 487.843 kb on + strand, within Echvi_0445at 487.844 kb on - strand, within Echvi_0445at 487.919 kb on + strand, within Echvi_0445at 487.925 kb on + strand, within Echvi_0445at 487.988 kb on + strand, within Echvi_0445at 487.988 kb on + strand, within Echvi_0445at 488.200 kb on + strand, within Echvi_0445at 488.200 kb on + strand, within Echvi_0445at 488.203 kb on + strand, within Echvi_0445at 488.203 kb on + strand, within Echvi_0445at 488.228 kb on - strand, within Echvi_0445at 488.234 kb on + strand, within Echvi_0445at 488.235 kb on - strand, within Echvi_0445at 488.371 kb on - strand, within Echvi_0445at 488.379 kb on - strand, within Echvi_0445at 488.388 kb on + strand, within Echvi_0445at 488.389 kb on - strand, within Echvi_0445at 488.389 kb on - strand, within Echvi_0445at 488.416 kb on + strand, within Echvi_0445at 488.417 kb on - strand, within Echvi_0445at 488.421 kb on - strand, within Echvi_0445at 488.465 kb on + strand, within Echvi_0445at 488.465 kb on + strand, within Echvi_0445at 488.476 kb on - strand, within Echvi_0445at 488.652 kb on + strandat 488.658 kb on + strandat 488.766 kb on - strandat 488.771 kb on + strandat 488.771 kb on + strandat 488.771 kb on + strandat 488.772 kb on - strandat 488.772 kb on - strandat 488.830 kb on - strandat 488.849 kb on + strandat 488.855 kb on - strandat 488.961 kb on + strandat 488.962 kb on - strandat 488.962 kb on - strandat 488.976 kb on + strandat 488.980 kb on + strandat 488.980 kb on + strandat 488.980 kb on + strandat 488.981 kb on - strandat 488.981 kb on - strandat 488.981 kb on - strandat 489.014 kb on + strandat 489.035 kb on + strandat 489.036 kb on - strandat 489.036 kb on - strandat 489.089 kb on - strandat 489.236 kb on + strandat 489.238 kb on + strandat 489.238 kb on + strandat 489.238 kb on + strandat 489.239 kb on - strandat 489.241 kb on - strandat 489.283 kb on + strandat 489.284 kb on - strandat 489.293 kb on - strandat 489.337 kb on + strandat 489.360 kb on + strandat 489.360 kb on + strandat 489.361 kb on - strandat 489.361 kb on - strandat 489.378 kb on + strandat 489.403 kb on - strandat 489.459 kb on + strandat 489.459 kb on + strandat 489.459 kb on + strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.492 kb on + strand, within Echvi_0446at 489.494 kb on + strand, within Echvi_0446at 489.494 kb on + strand, within Echvi_0446at 489.548 kb on + strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.550 kb on + strand, within Echvi_0446at 489.550 kb on + strand, within Echvi_0446at 489.582 kb on + strand, within Echvi_0446at 489.583 kb on - strand, within Echvi_0446at 489.615 kb on + strand, within Echvi_0446at 489.707 kb on - strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.709 kb on - strand, within Echvi_0446at 489.720 kb on - strand, within Echvi_0446at 489.720 kb on - strand, within Echvi_0446at 489.745 kb on + strand, within Echvi_0446at 489.746 kb on - strand, within Echvi_0446

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml
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486,113 - Echvi_0444 0.73 +2.3
486,137 + Echvi_0444 0.74 +0.1
486,137 + Echvi_0444 0.74 -1.1
486,138 - Echvi_0444 0.74 +2.0
486,139 + Echvi_0444 0.74 +0.2
486,140 - Echvi_0444 0.74 -0.2
486,163 + Echvi_0444 0.75 -2.7
486,174 + Echvi_0444 0.75 -1.1
486,174 + Echvi_0444 0.75 +0.2
486,174 + Echvi_0444 0.75 -1.2
486,174 + Echvi_0444 0.75 -0.0
486,348 - Echvi_0444 0.80 -0.0
486,401 + Echvi_0444 0.82 +0.8
486,402 - Echvi_0444 0.82 +1.0
486,572 - Echvi_0444 0.87 -1.5
486,573 + Echvi_0444 0.87 -0.5
486,573 + Echvi_0444 0.87 -0.0
486,574 - Echvi_0444 0.87 -0.5
486,602 - Echvi_0444 0.88 -0.2
486,604 + Echvi_0444 0.88 +0.8
486,605 - Echvi_0444 0.88 +0.6
486,605 - Echvi_0444 0.88 +0.0
486,605 - Echvi_0444 0.88 +0.1
486,613 - Echvi_0444 0.88 -0.2
486,617 + Echvi_0444 0.88 +0.7
486,617 + Echvi_0444 0.88 +0.2
486,625 - Echvi_0444 0.88 +0.8
486,625 - Echvi_0444 0.88 +0.8
486,673 - Echvi_0444 0.90 +2.0
486,694 - +1.2
486,694 - +0.9
486,694 - -0.5
486,704 + -0.4
486,723 + +0.6
486,723 + +0.2
486,726 + +3.6
486,727 - -1.1
486,727 - +0.0
486,727 - +1.4
487,013 - -0.3
487,027 + -0.2
487,028 - +1.0
487,038 - +0.3
487,101 + -0.3
487,102 - -0.3
487,204 + +0.2
487,320 + Echvi_0445 0.14 -0.0
487,358 + Echvi_0445 0.17 +0.3
487,361 - Echvi_0445 0.17 +0.7
487,370 - Echvi_0445 0.17 -1.5
487,370 - Echvi_0445 0.17 -0.6
487,376 - Echvi_0445 0.18 +0.5
487,466 - Echvi_0445 0.23 -0.4
487,529 - Echvi_0445 0.27 +1.2
487,548 - Echvi_0445 0.28 +0.2
487,704 - Echvi_0445 0.37 -0.7
487,759 + Echvi_0445 0.40 +0.7
487,760 - Echvi_0445 0.40 +1.4
487,760 - Echvi_0445 0.40 +0.7
487,760 - Echvi_0445 0.40 -1.9
487,827 - Echvi_0445 0.44 -0.4
487,837 + Echvi_0445 0.45 -0.4
487,837 + Echvi_0445 0.45 -0.2
487,838 - Echvi_0445 0.45 +0.3
487,843 + Echvi_0445 0.45 +2.7
487,844 - Echvi_0445 0.45 +0.7
487,919 + Echvi_0445 0.49 +0.4
487,925 + Echvi_0445 0.50 -0.0
487,988 + Echvi_0445 0.53 -0.2
487,988 + Echvi_0445 0.53 -0.2
488,200 + Echvi_0445 0.66 +0.5
488,200 + Echvi_0445 0.66 -0.1
488,203 + Echvi_0445 0.66 -0.0
488,203 + Echvi_0445 0.66 +0.4
488,228 - Echvi_0445 0.67 +0.9
488,234 + Echvi_0445 0.68 +1.0
488,235 - Echvi_0445 0.68 -1.0
488,371 - Echvi_0445 0.76 -0.2
488,379 - Echvi_0445 0.76 -0.0
488,388 + Echvi_0445 0.77 +1.6
488,389 - Echvi_0445 0.77 -1.7
488,389 - Echvi_0445 0.77 -1.6
488,416 + Echvi_0445 0.78 -0.1
488,417 - Echvi_0445 0.78 -0.0
488,421 - Echvi_0445 0.79 +1.4
488,465 + Echvi_0445 0.81 -0.3
488,465 + Echvi_0445 0.81 -0.5
488,476 - Echvi_0445 0.82 +1.2
488,652 + -1.0
488,658 + +1.0
488,766 - -1.2
488,771 + +0.4
488,771 + +1.4
488,771 + -0.0
488,772 - +1.5
488,772 - -1.0
488,830 - +2.0
488,849 + -0.9
488,855 - -0.8
488,961 + +1.4
488,962 - +0.3
488,962 - -0.8
488,976 + +0.6
488,980 + +1.0
488,980 + +0.5
488,980 + -2.3
488,981 - -0.1
488,981 - +0.4
488,981 - +0.8
489,014 + +1.0
489,035 + +0.2
489,036 - -1.4
489,036 - -1.0
489,089 - -0.0
489,236 + -0.1
489,238 + -0.4
489,238 + -0.4
489,238 + -0.0
489,239 - -0.1
489,241 - -0.2
489,283 + -0.5
489,284 - -1.0
489,293 - -0.6
489,337 + +0.0
489,360 + +0.1
489,360 + +1.1
489,361 - +1.4
489,361 - +0.1
489,378 + +0.9
489,403 - -0.4
489,459 + +0.5
489,459 + -0.1
489,459 + -0.0
489,460 - -0.5
489,460 - +0.2
489,460 - -0.0
489,460 - -0.3
489,460 - -0.4
489,460 - +0.8
489,460 - +0.5
489,492 + Echvi_0446 0.11 -0.2
489,494 + Echvi_0446 0.11 -0.3
489,494 + Echvi_0446 0.11 -0.3
489,548 + Echvi_0446 0.17 -1.0
489,549 - Echvi_0446 0.17 +0.1
489,549 - Echvi_0446 0.17 -0.9
489,549 - Echvi_0446 0.17 -0.5
489,549 - Echvi_0446 0.17 -0.8
489,549 - Echvi_0446 0.17 +0.4
489,549 - Echvi_0446 0.17 -0.5
489,550 + Echvi_0446 0.17 +0.4
489,550 + Echvi_0446 0.17 -1.3
489,582 + Echvi_0446 0.21 -0.4
489,583 - Echvi_0446 0.21 +1.2
489,615 + Echvi_0446 0.24 +0.1
489,707 - Echvi_0446 0.34 +1.1
489,708 + Echvi_0446 0.34 -0.2
489,708 + Echvi_0446 0.34 -1.2
489,708 + Echvi_0446 0.34 -0.4
489,709 - Echvi_0446 0.34 +0.0
489,720 - Echvi_0446 0.35 -0.7
489,720 - Echvi_0446 0.35 -0.0
489,745 + Echvi_0446 0.37 +0.2
489,746 - Echvi_0446 0.38 -1.8

Or see this region's nucleotide sequence