Experiment: m.b. Fusidic 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0181 and Echvi_0182 are separated by 49 nucleotides Echvi_0182 and Echvi_0183 overlap by 13 nucleotides Echvi_0183 and Echvi_0184 are separated by 54 nucleotides
Echvi_0181: Echvi_0181 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 198,359 to 199,294
_0181
Echvi_0182: Echvi_0182 - Mg2+ transporter (mgtE), at 199,344 to 200,711
_0182
Echvi_0183: Echvi_0183 - dimethyladenosine transferase, at 200,699 to 201,481
_0183
Echvi_0184: Echvi_0184 - Leucyl aminopeptidase, at 201,536 to 202,972
_0184
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.065 kb on - strand, within Echvi_0181 at 199.256 kb on - strand at 199.288 kb on + strand at 199.289 kb on - strand at 199.332 kb on + strand at 199.332 kb on + strand at 199.333 kb on - strand at 199.333 kb on - strand at 200.756 kb on + strand at 200.756 kb on + strand at 200.757 kb on - strand at 200.821 kb on + strand, within Echvi_0183 at 200.854 kb on + strand, within Echvi_0183 at 200.946 kb on - strand, within Echvi_0183 at 200.991 kb on + strand, within Echvi_0183 at 200.991 kb on + strand, within Echvi_0183 at 200.996 kb on + strand, within Echvi_0183 at 200.997 kb on - strand, within Echvi_0183 at 200.997 kb on - strand, within Echvi_0183 at 201.036 kb on + strand, within Echvi_0183 at 201.036 kb on + strand, within Echvi_0183 at 201.036 kb on + strand, within Echvi_0183 at 201.037 kb on - strand, within Echvi_0183 at 201.157 kb on + strand, within Echvi_0183 at 201.182 kb on - strand, within Echvi_0183 at 201.183 kb on + strand, within Echvi_0183 at 201.184 kb on - strand, within Echvi_0183 at 201.239 kb on - strand, within Echvi_0183 at 201.249 kb on - strand, within Echvi_0183 at 201.371 kb on + strand, within Echvi_0183 at 201.485 kb on + strand at 201.503 kb on - strand at 201.533 kb on + strand at 201.533 kb on + strand at 201.533 kb on + strand at 201.533 kb on + strand at 201.534 kb on - strand at 201.535 kb on + strand at 201.535 kb on + strand at 201.535 kb on + strand at 201.535 kb on + strand at 201.535 kb on + strand at 201.536 kb on - strand at 201.536 kb on - strand at 201.549 kb on + strand at 201.558 kb on + strand at 201.558 kb on + strand at 201.601 kb on + strand at 201.601 kb on + strand at 201.601 kb on + strand at 201.602 kb on - strand at 201.630 kb on + strand at 201.636 kb on + strand at 201.636 kb on + strand at 201.640 kb on + strand at 201.640 kb on + strand at 201.640 kb on + strand at 201.641 kb on - strand at 201.643 kb on + strand at 201.662 kb on - strand at 201.672 kb on + strand at 201.672 kb on + strand at 201.685 kb on + strand, within Echvi_0184
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml remove 199,065 - Echvi_0181 0.75 -1.9 199,256 - -1.6 199,288 + +1.9 199,289 - -1.6 199,332 + +0.6 199,332 + -0.2 199,333 - +0.0 199,333 - -1.2 200,756 + -0.7 200,756 + -1.5 200,757 - -3.0 200,821 + Echvi_0183 0.16 +0.9 200,854 + Echvi_0183 0.20 -0.9 200,946 - Echvi_0183 0.32 -3.0 200,991 + Echvi_0183 0.37 -1.1 200,991 + Echvi_0183 0.37 -1.7 200,996 + Echvi_0183 0.38 -3.0 200,997 - Echvi_0183 0.38 -1.7 200,997 - Echvi_0183 0.38 -2.8 201,036 + Echvi_0183 0.43 -2.3 201,036 + Echvi_0183 0.43 +0.9 201,036 + Echvi_0183 0.43 -3.6 201,037 - Echvi_0183 0.43 -2.4 201,157 + Echvi_0183 0.58 -0.5 201,182 - Echvi_0183 0.62 -2.2 201,183 + Echvi_0183 0.62 -2.6 201,184 - Echvi_0183 0.62 -1.7 201,239 - Echvi_0183 0.69 -2.5 201,249 - Echvi_0183 0.70 -1.8 201,371 + Echvi_0183 0.86 -2.6 201,485 + -2.0 201,503 - -1.9 201,533 + -1.9 201,533 + +0.2 201,533 + +0.0 201,533 + -1.5 201,534 - +0.3 201,535 + -0.7 201,535 + -0.7 201,535 + +0.1 201,535 + +0.9 201,535 + -0.4 201,536 - -0.6 201,536 - -0.3 201,549 + -2.1 201,558 + +0.3 201,558 + +0.1 201,601 + -1.4 201,601 + +1.9 201,601 + -1.2 201,602 - -0.6 201,630 + -0.1 201,636 + +0.9 201,636 + -1.8 201,640 + +0.9 201,640 + +0.3 201,640 + +0.7 201,641 - -0.1 201,643 + +0.5 201,662 - -0.8 201,672 + -1.2 201,672 + +1.1 201,685 + Echvi_0184 0.10 -1.0
Or see this region's nucleotide sequence