Experiment: m.b. Fusidic 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0179 and Echvi_0180 are separated by 50 nucleotides Echvi_0180 and Echvi_0181 are separated by 154 nucleotides Echvi_0181 and Echvi_0182 are separated by 49 nucleotides
Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680
_0179
Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204
_0180
Echvi_0181: Echvi_0181 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 198,359 to 199,294
_0181
Echvi_0182: Echvi_0182 - Mg2+ transporter (mgtE), at 199,344 to 200,711
_0182
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 197.426 kb on + strand, within Echvi_0179 at 197.449 kb on + strand, within Echvi_0179 at 197.450 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.543 kb on + strand, within Echvi_0179 at 197.544 kb on - strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.555 kb on - strand, within Echvi_0179 at 197.558 kb on + strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.711 kb on - strand at 197.732 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.782 kb on + strand, within Echvi_0180 at 197.890 kb on - strand, within Echvi_0180 at 197.914 kb on - strand at 198.060 kb on - strand, within Echvi_0180 at 198.183 kb on + strand at 198.185 kb on + strand at 198.188 kb on + strand at 198.188 kb on + strand at 198.189 kb on - strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.290 kb on - strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.311 kb on - strand at 198.330 kb on + strand at 199.065 kb on - strand, within Echvi_0181 at 199.256 kb on - strand at 199.288 kb on + strand at 199.289 kb on - strand at 199.332 kb on + strand at 199.332 kb on + strand at 199.333 kb on - strand at 199.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml remove 197,426 + Echvi_0179 0.36 +1.4 197,449 + Echvi_0179 0.41 +0.4 197,450 - Echvi_0179 0.42 +0.9 197,539 - Echvi_0179 0.64 +0.1 197,539 - Echvi_0179 0.64 +0.9 197,543 + Echvi_0179 0.65 -0.1 197,544 - Echvi_0179 0.65 +1.2 197,554 + Echvi_0179 0.68 +0.1 197,554 + Echvi_0179 0.68 +0.0 197,555 - Echvi_0179 0.68 -0.4 197,558 + Echvi_0179 0.69 -1.0 197,633 - Echvi_0179 0.88 -0.6 197,633 - Echvi_0179 0.88 +0.0 197,711 - +2.4 197,732 + +0.1 197,739 + -1.6 197,739 + -1.1 197,739 + -0.1 197,782 + Echvi_0180 0.11 +0.9 197,890 - Echvi_0180 0.34 -0.8 197,914 - +2.5 198,060 - Echvi_0180 0.69 +2.5 198,183 + +2.3 198,185 + +2.2 198,188 + -1.9 198,188 + +1.1 198,189 - +0.9 198,280 + +0.8 198,280 + -0.6 198,280 + +0.3 198,280 + +0.3 198,290 - -0.9 198,308 + +0.7 198,308 + -0.8 198,308 + +1.1 198,308 + +1.5 198,309 - -1.2 198,309 - -0.5 198,309 - -0.1 198,309 - +0.9 198,309 - -1.2 198,310 + -0.4 198,310 + +1.3 198,310 + +0.3 198,311 - -0.1 198,330 + +0.1 199,065 - Echvi_0181 0.75 -1.9 199,256 - -1.6 199,288 + +1.9 199,289 - -1.6 199,332 + +0.6 199,332 + -0.2 199,333 - +0.0 199,333 - -1.2
Or see this region's nucleotide sequence