Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3873 and Atu3874 are separated by 255 nucleotides Atu3874 and Atu3875 are separated by 13 nucleotides Atu3875 and Atu3876 are separated by 2 nucleotides
Atu3873: Atu3873 - hypothetical protein, at 966,601 to 967,581
Atu3873
Atu3874: Atu3874 - L-xylulose kinase, at 967,837 to 969,315
Atu3874
Atu3875: Atu3875 - aldolase, at 969,329 to 970,171
Atu3875
Atu3876: Atu3876 - glycerol-3-phosphate dehydrogenase, at 970,174 to 971,898
Atu3876
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 966.939 kb on - strand, within Atu3873 at 966.965 kb on + strand, within Atu3873 at 966.992 kb on + strand, within Atu3873 at 967.107 kb on + strand, within Atu3873 at 967.115 kb on - strand, within Atu3873 at 967.204 kb on + strand, within Atu3873 at 967.392 kb on + strand, within Atu3873 at 967.480 kb on - strand, within Atu3873 at 967.526 kb on + strand at 967.591 kb on + strand at 967.641 kb on + strand at 967.748 kb on + strand at 967.811 kb on + strand at 968.002 kb on - strand, within Atu3874 at 968.013 kb on + strand, within Atu3874 at 968.018 kb on + strand, within Atu3874 at 968.095 kb on + strand, within Atu3874 at 968.131 kb on + strand, within Atu3874 at 968.162 kb on + strand, within Atu3874 at 968.207 kb on + strand, within Atu3874 at 968.207 kb on + strand, within Atu3874 at 968.215 kb on - strand, within Atu3874 at 968.233 kb on + strand, within Atu3874 at 968.240 kb on - strand, within Atu3874 at 968.353 kb on - strand, within Atu3874 at 968.363 kb on - strand, within Atu3874 at 968.478 kb on - strand, within Atu3874 at 968.493 kb on + strand, within Atu3874 at 968.493 kb on + strand, within Atu3874 at 968.506 kb on - strand, within Atu3874 at 968.572 kb on + strand, within Atu3874 at 968.580 kb on + strand, within Atu3874 at 968.677 kb on - strand, within Atu3874 at 968.677 kb on - strand, within Atu3874 at 968.730 kb on + strand, within Atu3874 at 968.737 kb on + strand, within Atu3874 at 968.781 kb on + strand, within Atu3874 at 968.798 kb on + strand, within Atu3874 at 968.863 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.873 kb on + strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.881 kb on - strand, within Atu3874 at 968.886 kb on - strand, within Atu3874 at 968.900 kb on - strand, within Atu3874 at 968.917 kb on + strand, within Atu3874 at 968.925 kb on - strand, within Atu3874 at 968.942 kb on + strand, within Atu3874 at 968.950 kb on - strand, within Atu3874 at 968.950 kb on - strand, within Atu3874 at 968.950 kb on - strand, within Atu3874 at 968.979 kb on - strand, within Atu3874 at 969.025 kb on + strand, within Atu3874 at 969.108 kb on - strand, within Atu3874 at 969.108 kb on - strand, within Atu3874 at 969.118 kb on + strand, within Atu3874 at 969.167 kb on - strand, within Atu3874 at 969.198 kb on + strand at 969.211 kb on - strand at 969.218 kb on - strand at 969.266 kb on + strand at 969.289 kb on - strand at 969.311 kb on - strand at 969.336 kb on + strand at 969.344 kb on - strand at 969.427 kb on + strand, within Atu3875 at 969.527 kb on + strand, within Atu3875 at 969.532 kb on + strand, within Atu3875 at 969.532 kb on + strand, within Atu3875 at 969.553 kb on + strand, within Atu3875 at 969.627 kb on + strand, within Atu3875 at 969.670 kb on + strand, within Atu3875 at 969.687 kb on + strand, within Atu3875 at 969.695 kb on - strand, within Atu3875 at 969.722 kb on - strand, within Atu3875 at 969.822 kb on - strand, within Atu3875 at 969.862 kb on + strand, within Atu3875 at 969.894 kb on + strand, within Atu3875 at 970.001 kb on + strand, within Atu3875 at 970.061 kb on - strand, within Atu3875 at 970.119 kb on - strand at 970.195 kb on + strand at 970.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 966,939 - Atu3873 0.34 +0.8 966,965 + Atu3873 0.37 +1.2 966,992 + Atu3873 0.40 -0.2 967,107 + Atu3873 0.52 +0.3 967,115 - Atu3873 0.52 -1.3 967,204 + Atu3873 0.61 -1.0 967,392 + Atu3873 0.81 +0.3 967,480 - Atu3873 0.90 +0.3 967,526 + -0.0 967,591 + +0.3 967,641 + -0.4 967,748 + -0.1 967,811 + -0.0 968,002 - Atu3874 0.11 +0.8 968,013 + Atu3874 0.12 -0.1 968,018 + Atu3874 0.12 +1.1 968,095 + Atu3874 0.17 +0.1 968,131 + Atu3874 0.20 +0.9 968,162 + Atu3874 0.22 -0.1 968,207 + Atu3874 0.25 +0.2 968,207 + Atu3874 0.25 -0.1 968,215 - Atu3874 0.26 +1.5 968,233 + Atu3874 0.27 -1.7 968,240 - Atu3874 0.27 -0.2 968,353 - Atu3874 0.35 +0.3 968,363 - Atu3874 0.36 +0.9 968,478 - Atu3874 0.43 +1.3 968,493 + Atu3874 0.44 +0.4 968,493 + Atu3874 0.44 +0.2 968,506 - Atu3874 0.45 -0.1 968,572 + Atu3874 0.50 +0.8 968,580 + Atu3874 0.50 +0.4 968,677 - Atu3874 0.57 +0.3 968,677 - Atu3874 0.57 +0.0 968,730 + Atu3874 0.60 -0.3 968,737 + Atu3874 0.61 -0.7 968,781 + Atu3874 0.64 -1.0 968,798 + Atu3874 0.65 +0.1 968,863 + Atu3874 0.69 -0.5 968,873 + Atu3874 0.70 -0.7 968,873 + Atu3874 0.70 +0.1 968,873 + Atu3874 0.70 -0.3 968,873 + Atu3874 0.70 -0.4 968,873 + Atu3874 0.70 -0.7 968,873 + Atu3874 0.70 +0.0 968,873 + Atu3874 0.70 -0.1 968,881 - Atu3874 0.71 +0.6 968,881 - Atu3874 0.71 +0.7 968,881 - Atu3874 0.71 +0.5 968,881 - Atu3874 0.71 +0.9 968,881 - Atu3874 0.71 +0.5 968,881 - Atu3874 0.71 +0.4 968,881 - Atu3874 0.71 -1.0 968,886 - Atu3874 0.71 -0.5 968,900 - Atu3874 0.72 -0.5 968,917 + Atu3874 0.73 -0.1 968,925 - Atu3874 0.74 -0.8 968,942 + Atu3874 0.75 +0.0 968,950 - Atu3874 0.75 -0.4 968,950 - Atu3874 0.75 -0.5 968,950 - Atu3874 0.75 -0.3 968,979 - Atu3874 0.77 -2.3 969,025 + Atu3874 0.80 +0.3 969,108 - Atu3874 0.86 +0.5 969,108 - Atu3874 0.86 -0.5 969,118 + Atu3874 0.87 -0.0 969,167 - Atu3874 0.90 -0.1 969,198 + +0.2 969,211 - +0.2 969,218 - -1.7 969,266 + -0.1 969,289 - -1.3 969,311 - +0.2 969,336 + +1.5 969,344 - +0.6 969,427 + Atu3875 0.12 +0.4 969,527 + Atu3875 0.23 +0.1 969,532 + Atu3875 0.24 -0.9 969,532 + Atu3875 0.24 -1.5 969,553 + Atu3875 0.27 -0.7 969,627 + Atu3875 0.35 -0.1 969,670 + Atu3875 0.40 -0.4 969,687 + Atu3875 0.42 +0.9 969,695 - Atu3875 0.43 -0.7 969,722 - Atu3875 0.47 +0.0 969,822 - Atu3875 0.58 -0.0 969,862 + Atu3875 0.63 +0.4 969,894 + Atu3875 0.67 +0.4 970,001 + Atu3875 0.80 +0.7 970,061 - Atu3875 0.87 +0.3 970,119 - +0.2 970,195 + -0.7 970,220 - -0.1
Or see this region's nucleotide sequence