Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2668

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2667 and Echvi_2668 are separated by 28 nucleotidesEchvi_2668 and Echvi_2669 are separated by 179 nucleotides Echvi_2667: Echvi_2667 - hypothetical protein, at 3,166,073 to 3,167,494 _2667 Echvi_2668: Echvi_2668 - Beta-xylosidase, at 3,167,523 to 3,168,482 _2668 Echvi_2669: Echvi_2669 - Domain of unknown function (DUF303)., at 3,168,662 to 3,169,498 _2669 Position (kb) 3167 3168 3169Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3166.599 kb on + strand, within Echvi_2667at 3166.600 kb on - strand, within Echvi_2667at 3166.623 kb on + strand, within Echvi_2667at 3166.628 kb on - strand, within Echvi_2667at 3166.636 kb on + strand, within Echvi_2667at 3166.838 kb on - strand, within Echvi_2667at 3166.929 kb on - strand, within Echvi_2667at 3166.961 kb on - strand, within Echvi_2667at 3166.978 kb on + strand, within Echvi_2667at 3166.978 kb on + strand, within Echvi_2667at 3167.130 kb on - strand, within Echvi_2667at 3167.130 kb on - strand, within Echvi_2667at 3167.164 kb on + strand, within Echvi_2667at 3167.164 kb on + strand, within Echvi_2667at 3167.165 kb on - strand, within Echvi_2667at 3167.493 kb on - strandat 3167.542 kb on + strandat 3167.609 kb on - strandat 3167.651 kb on - strand, within Echvi_2668at 3167.834 kb on + strand, within Echvi_2668at 3167.835 kb on - strand, within Echvi_2668at 3167.841 kb on + strand, within Echvi_2668at 3167.842 kb on - strand, within Echvi_2668at 3167.842 kb on - strand, within Echvi_2668at 3167.847 kb on + strand, within Echvi_2668at 3167.847 kb on + strand, within Echvi_2668at 3167.847 kb on + strand, within Echvi_2668at 3167.848 kb on - strand, within Echvi_2668at 3167.848 kb on - strand, within Echvi_2668at 3167.848 kb on - strand, within Echvi_2668at 3167.848 kb on - strand, within Echvi_2668at 3167.852 kb on - strand, within Echvi_2668at 3167.919 kb on - strand, within Echvi_2668at 3168.045 kb on + strand, within Echvi_2668at 3168.051 kb on + strand, within Echvi_2668at 3168.051 kb on + strand, within Echvi_2668at 3168.051 kb on + strand, within Echvi_2668at 3168.071 kb on + strand, within Echvi_2668at 3168.144 kb on - strand, within Echvi_2668at 3168.183 kb on + strand, within Echvi_2668at 3168.184 kb on - strand, within Echvi_2668at 3168.192 kb on + strand, within Echvi_2668at 3168.193 kb on - strand, within Echvi_2668at 3168.193 kb on - strand, within Echvi_2668at 3168.224 kb on - strand, within Echvi_2668at 3168.228 kb on + strand, within Echvi_2668at 3168.228 kb on + strand, within Echvi_2668at 3168.228 kb on + strand, within Echvi_2668at 3168.229 kb on - strand, within Echvi_2668at 3168.303 kb on - strand, within Echvi_2668at 3168.328 kb on - strand, within Echvi_2668at 3168.328 kb on - strand, within Echvi_2668at 3168.328 kb on - strand, within Echvi_2668at 3168.386 kb on + strand, within Echvi_2668at 3168.408 kb on + strandat 3168.408 kb on + strandat 3168.409 kb on - strandat 3168.411 kb on - strandat 3168.411 kb on - strandat 3168.411 kb on - strandat 3168.418 kb on - strandat 3168.418 kb on - strandat 3168.418 kb on - strandat 3168.491 kb on - strandat 3168.491 kb on - strandat 3168.494 kb on + strandat 3168.494 kb on + strandat 3168.495 kb on - strandat 3168.495 kb on - strandat 3168.504 kb on + strandat 3168.505 kb on - strandat 3168.505 kb on - strandat 3168.604 kb on - strandat 3168.608 kb on - strandat 3168.647 kb on + strandat 3168.648 kb on - strandat 3168.648 kb on - strandat 3168.651 kb on - strandat 3168.659 kb on + strandat 3168.660 kb on - strandat 3168.660 kb on - strandat 3168.704 kb on - strandat 3168.817 kb on - strand, within Echvi_2669at 3168.817 kb on - strand, within Echvi_2669at 3168.838 kb on - strand, within Echvi_2669at 3169.016 kb on - strand, within Echvi_2669at 3169.020 kb on + strand, within Echvi_2669at 3169.039 kb on + strand, within Echvi_2669at 3169.039 kb on + strand, within Echvi_2669at 3169.040 kb on - strand, within Echvi_2669at 3169.053 kb on - strand, within Echvi_2669at 3169.095 kb on + strand, within Echvi_2669at 3169.097 kb on + strand, within Echvi_2669at 3169.098 kb on - strand, within Echvi_2669at 3169.098 kb on - strand, within Echvi_2669at 3169.173 kb on + strand, within Echvi_2669at 3169.195 kb on + strand, within Echvi_2669at 3169.233 kb on + strand, within Echvi_2669at 3169.233 kb on + strand, within Echvi_2669at 3169.234 kb on - strand, within Echvi_2669at 3169.279 kb on - strand, within Echvi_2669at 3169.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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3,166,599 + Echvi_2667 0.37 -0.2
3,166,600 - Echvi_2667 0.37 +0.7
3,166,623 + Echvi_2667 0.39 -2.0
3,166,628 - Echvi_2667 0.39 +1.1
3,166,636 + Echvi_2667 0.40 +2.4
3,166,838 - Echvi_2667 0.54 -0.4
3,166,929 - Echvi_2667 0.60 -0.8
3,166,961 - Echvi_2667 0.62 +0.4
3,166,978 + Echvi_2667 0.64 +1.1
3,166,978 + Echvi_2667 0.64 +0.7
3,167,130 - Echvi_2667 0.74 +0.3
3,167,130 - Echvi_2667 0.74 +0.1
3,167,164 + Echvi_2667 0.77 +0.1
3,167,164 + Echvi_2667 0.77 +0.1
3,167,165 - Echvi_2667 0.77 +1.0
3,167,493 - -0.0
3,167,542 + +0.7
3,167,609 - -0.7
3,167,651 - Echvi_2668 0.13 -0.1
3,167,834 + Echvi_2668 0.32 +3.2
3,167,835 - Echvi_2668 0.33 +0.9
3,167,841 + Echvi_2668 0.33 +1.3
3,167,842 - Echvi_2668 0.33 -0.0
3,167,842 - Echvi_2668 0.33 -0.7
3,167,847 + Echvi_2668 0.34 -0.4
3,167,847 + Echvi_2668 0.34 +1.0
3,167,847 + Echvi_2668 0.34 -0.4
3,167,848 - Echvi_2668 0.34 -0.2
3,167,848 - Echvi_2668 0.34 +0.0
3,167,848 - Echvi_2668 0.34 -0.2
3,167,848 - Echvi_2668 0.34 +3.5
3,167,852 - Echvi_2668 0.34 -1.0
3,167,919 - Echvi_2668 0.41 +0.5
3,168,045 + Echvi_2668 0.54 +1.9
3,168,051 + Echvi_2668 0.55 -0.1
3,168,051 + Echvi_2668 0.55 -0.2
3,168,051 + Echvi_2668 0.55 +0.7
3,168,071 + Echvi_2668 0.57 -0.9
3,168,144 - Echvi_2668 0.65 -0.1
3,168,183 + Echvi_2668 0.69 -1.8
3,168,184 - Echvi_2668 0.69 -1.0
3,168,192 + Echvi_2668 0.70 +0.4
3,168,193 - Echvi_2668 0.70 -0.2
3,168,193 - Echvi_2668 0.70 -0.1
3,168,224 - Echvi_2668 0.73 +0.0
3,168,228 + Echvi_2668 0.73 +1.7
3,168,228 + Echvi_2668 0.73 +1.2
3,168,228 + Echvi_2668 0.73 -1.5
3,168,229 - Echvi_2668 0.74 -0.2
3,168,303 - Echvi_2668 0.81 -0.3
3,168,328 - Echvi_2668 0.84 -0.9
3,168,328 - Echvi_2668 0.84 +1.7
3,168,328 - Echvi_2668 0.84 -1.0
3,168,386 + Echvi_2668 0.90 +2.7
3,168,408 + -0.9
3,168,408 + +0.3
3,168,409 - -0.0
3,168,411 - +0.3
3,168,411 - -0.6
3,168,411 - -0.6
3,168,418 - -0.3
3,168,418 - +0.2
3,168,418 - -0.8
3,168,491 - +0.4
3,168,491 - -0.3
3,168,494 + -0.7
3,168,494 + -0.9
3,168,495 - -1.1
3,168,495 - +1.1
3,168,504 + -0.9
3,168,505 - -0.5
3,168,505 - +1.0
3,168,604 - -0.2
3,168,608 - -0.3
3,168,647 + -0.1
3,168,648 - -0.2
3,168,648 - +0.7
3,168,651 - -0.3
3,168,659 + -1.2
3,168,660 - -0.1
3,168,660 - -0.0
3,168,704 - -0.5
3,168,817 - Echvi_2669 0.19 -0.3
3,168,817 - Echvi_2669 0.19 +2.1
3,168,838 - Echvi_2669 0.21 -0.8
3,169,016 - Echvi_2669 0.42 -0.1
3,169,020 + Echvi_2669 0.43 +0.3
3,169,039 + Echvi_2669 0.45 +1.1
3,169,039 + Echvi_2669 0.45 -0.3
3,169,040 - Echvi_2669 0.45 +0.1
3,169,053 - Echvi_2669 0.47 -0.4
3,169,095 + Echvi_2669 0.52 -2.3
3,169,097 + Echvi_2669 0.52 +1.1
3,169,098 - Echvi_2669 0.52 -1.1
3,169,098 - Echvi_2669 0.52 -0.6
3,169,173 + Echvi_2669 0.61 -0.0
3,169,195 + Echvi_2669 0.64 -1.4
3,169,233 + Echvi_2669 0.68 +0.2
3,169,233 + Echvi_2669 0.68 +0.1
3,169,234 - Echvi_2669 0.68 -0.6
3,169,279 - Echvi_2669 0.74 -0.2
3,169,453 - -0.5

Or see this region's nucleotide sequence