Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0353 and Echvi_0354 are separated by 411 nucleotides Echvi_0354 and Echvi_0355 are separated by 4 nucleotides Echvi_0355 and Echvi_0356 are separated by 102 nucleotides
Echvi_0353: Echvi_0353 - hypothetical protein, at 379,783 to 380,916
_0353
Echvi_0354: Echvi_0354 - Predicted transcriptional regulators, at 381,328 to 381,657
_0354
Echvi_0355: Echvi_0355 - Putative stress-responsive transcriptional regulator, at 381,662 to 383,569
_0355
Echvi_0356: Echvi_0356 - Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain, at 383,672 to 385,072
_0356
Position (kb) 381
382
383
384 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 380.684 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.752 kb on + strand, within Echvi_0353 at 380.802 kb on + strand, within Echvi_0353 at 380.803 kb on - strand at 380.816 kb on + strand at 380.842 kb on + strand at 380.842 kb on + strand at 380.843 kb on - strand at 380.843 kb on - strand at 380.848 kb on + strand at 380.849 kb on - strand at 380.849 kb on - strand at 380.879 kb on - strand at 380.889 kb on + strand at 380.969 kb on + strand at 381.047 kb on - strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.136 kb on - strand at 381.136 kb on - strand at 381.190 kb on - strand at 381.236 kb on + strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.307 kb on + strand at 381.308 kb on - strand at 381.312 kb on + strand at 381.312 kb on + strand at 381.350 kb on + strand at 381.350 kb on + strand at 381.351 kb on - strand at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.412 kb on + strand at 381.413 kb on - strand, within Echvi_0354 at 381.413 kb on - strand, within Echvi_0354 at 381.453 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.475 kb on + strand, within Echvi_0354 at 381.476 kb on - strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.559 kb on + strand, within Echvi_0354 at 381.631 kb on - strand at 381.631 kb on - strand at 381.631 kb on - strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.676 kb on - strand at 381.676 kb on - strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.686 kb on - strand at 381.706 kb on + strand at 381.751 kb on + strand at 381.794 kb on - strand at 381.990 kb on - strand, within Echvi_0355 at 381.991 kb on + strand, within Echvi_0355 at 381.992 kb on - strand, within Echvi_0355 at 381.992 kb on - strand, within Echvi_0355 at 381.995 kb on + strand, within Echvi_0355 at 381.995 kb on + strand, within Echvi_0355 at 382.077 kb on + strand, within Echvi_0355 at 382.077 kb on + strand, within Echvi_0355 at 382.078 kb on - strand, within Echvi_0355 at 382.098 kb on - strand, within Echvi_0355 at 382.238 kb on + strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.240 kb on + strand, within Echvi_0355 at 382.240 kb on + strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.402 kb on - strand, within Echvi_0355 at 382.519 kb on - strand, within Echvi_0355 at 382.540 kb on + strand, within Echvi_0355 at 382.752 kb on + strand, within Echvi_0355 at 382.761 kb on - strand, within Echvi_0355 at 382.795 kb on + strand, within Echvi_0355 at 382.795 kb on + strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.869 kb on + strand, within Echvi_0355 at 382.870 kb on - strand, within Echvi_0355 at 382.966 kb on + strand, within Echvi_0355 at 383.134 kb on - strand, within Echvi_0355 at 383.244 kb on - strand, within Echvi_0355 at 383.351 kb on + strand, within Echvi_0355 at 383.446 kb on + strand at 383.450 kb on + strand at 383.450 kb on + strand at 383.451 kb on - strand at 383.451 kb on - strand at 383.451 kb on - strand at 383.451 kb on - strand at 383.543 kb on - strand at 383.649 kb on + strand at 383.663 kb on + strand at 383.755 kb on - strand at 383.882 kb on + strand, within Echvi_0356 at 384.002 kb on + strand, within Echvi_0356 at 384.051 kb on - strand, within Echvi_0356 at 384.076 kb on - strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.161 kb on - strand, within Echvi_0356 at 384.247 kb on + strand, within Echvi_0356 at 384.380 kb on + strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.446 kb on + strand, within Echvi_0356 at 384.447 kb on - strand, within Echvi_0356 at 384.447 kb on - strand, within Echvi_0356 at 384.495 kb on - strand, within Echvi_0356 at 384.495 kb on - strand, within Echvi_0356
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 380,684 + Echvi_0353 0.79 -0.6 380,688 + Echvi_0353 0.80 -2.2 380,688 + Echvi_0353 0.80 +0.5 380,688 + Echvi_0353 0.80 -0.1 380,688 + Echvi_0353 0.80 -0.1 380,688 + Echvi_0353 0.80 -0.3 380,688 + Echvi_0353 0.80 +0.9 380,689 - Echvi_0353 0.80 -0.2 380,689 - Echvi_0353 0.80 +0.7 380,689 - Echvi_0353 0.80 -0.9 380,752 + Echvi_0353 0.85 +1.3 380,802 + Echvi_0353 0.90 -0.3 380,803 - +0.1 380,816 + -1.1 380,842 + +3.3 380,842 + +0.9 380,843 - +0.6 380,843 - +1.7 380,848 + -0.3 380,849 - -0.3 380,849 - -0.4 380,879 - +2.7 380,889 + -0.9 380,969 + -0.1 381,047 - -0.9 381,048 + -0.6 381,048 + -1.1 381,048 + -0.7 381,048 + +0.4 381,048 + -0.0 381,049 - -1.4 381,049 - +0.4 381,049 - -0.3 381,049 - -0.7 381,049 - +0.5 381,136 - -2.2 381,136 - -0.5 381,190 - +0.6 381,236 + -0.6 381,237 - +0.7 381,237 - -1.5 381,237 - -0.4 381,284 - -0.9 381,284 - +0.5 381,284 - +0.0 381,284 - -0.8 381,307 + +0.3 381,308 - -1.3 381,312 + -2.3 381,312 + -0.7 381,350 + +0.9 381,350 + -0.8 381,351 - -0.5 381,410 + Echvi_0354 0.25 +0.4 381,410 + Echvi_0354 0.25 +0.2 381,410 + Echvi_0354 0.25 -0.4 381,410 + Echvi_0354 0.25 +0.7 381,410 + Echvi_0354 0.25 +1.0 381,410 + Echvi_0354 0.25 -0.8 381,411 - Echvi_0354 0.25 -0.2 381,411 - Echvi_0354 0.25 +0.1 381,411 - Echvi_0354 0.25 +1.7 381,411 - Echvi_0354 0.25 -1.0 381,411 - Echvi_0354 0.25 +0.4 381,411 - Echvi_0354 0.25 -0.8 381,412 + +2.7 381,413 - Echvi_0354 0.26 -1.2 381,413 - Echvi_0354 0.26 -0.4 381,453 - Echvi_0354 0.38 -0.2 381,462 - Echvi_0354 0.41 +0.5 381,462 - Echvi_0354 0.41 -0.3 381,475 + Echvi_0354 0.45 -1.6 381,476 - Echvi_0354 0.45 +0.7 381,517 + Echvi_0354 0.57 +0.0 381,517 + Echvi_0354 0.57 -0.7 381,518 - Echvi_0354 0.58 +1.9 381,518 - Echvi_0354 0.58 +0.7 381,559 + Echvi_0354 0.70 -1.2 381,631 - +0.7 381,631 - -1.0 381,631 - +1.3 381,675 + -1.3 381,675 + +1.4 381,675 + -0.9 381,676 - -0.1 381,676 - +0.2 381,681 + -2.0 381,681 + -0.1 381,681 + +0.5 381,682 - +0.3 381,682 - +0.2 381,682 - +0.7 381,682 - -0.9 381,686 - +1.3 381,706 + -1.4 381,751 + -1.8 381,794 - +0.0 381,990 - Echvi_0355 0.17 -2.2 381,991 + Echvi_0355 0.17 -0.8 381,992 - Echvi_0355 0.17 -1.2 381,992 - Echvi_0355 0.17 -0.2 381,995 + Echvi_0355 0.17 -0.7 381,995 + Echvi_0355 0.17 -2.6 382,077 + Echvi_0355 0.22 -1.2 382,077 + Echvi_0355 0.22 +0.2 382,078 - Echvi_0355 0.22 +2.7 382,098 - Echvi_0355 0.23 -2.1 382,238 + Echvi_0355 0.30 -0.6 382,239 - Echvi_0355 0.30 -0.9 382,239 - Echvi_0355 0.30 -0.9 382,239 - Echvi_0355 0.30 -1.3 382,240 + Echvi_0355 0.30 -0.5 382,240 + Echvi_0355 0.30 -0.8 382,241 - Echvi_0355 0.30 -0.7 382,241 - Echvi_0355 0.30 -0.6 382,241 - Echvi_0355 0.30 -0.1 382,402 - Echvi_0355 0.39 -0.2 382,519 - Echvi_0355 0.45 -1.8 382,540 + Echvi_0355 0.46 +0.5 382,752 + Echvi_0355 0.57 +1.1 382,761 - Echvi_0355 0.58 +0.9 382,795 + Echvi_0355 0.59 -1.3 382,795 + Echvi_0355 0.59 -0.7 382,796 - Echvi_0355 0.59 -0.8 382,796 - Echvi_0355 0.59 -0.3 382,796 - Echvi_0355 0.59 +0.7 382,796 - Echvi_0355 0.59 -0.9 382,869 + Echvi_0355 0.63 +0.1 382,870 - Echvi_0355 0.63 -0.2 382,966 + Echvi_0355 0.68 +0.2 383,134 - Echvi_0355 0.77 -0.7 383,244 - Echvi_0355 0.83 -0.1 383,351 + Echvi_0355 0.89 +0.4 383,446 + -0.5 383,450 + +0.3 383,450 + +0.9 383,451 - -0.8 383,451 - -0.6 383,451 - +0.7 383,451 - +0.3 383,543 - -0.5 383,649 + -1.4 383,663 + +1.7 383,755 - -0.6 383,882 + Echvi_0356 0.15 +0.1 384,002 + Echvi_0356 0.24 +0.2 384,051 - Echvi_0356 0.27 +0.2 384,076 - Echvi_0356 0.29 -0.3 384,146 + Echvi_0356 0.34 -0.2 384,146 + Echvi_0356 0.34 +1.3 384,146 + Echvi_0356 0.34 +0.9 384,146 + Echvi_0356 0.34 -0.2 384,147 - Echvi_0356 0.34 -0.3 384,147 - Echvi_0356 0.34 +0.1 384,147 - Echvi_0356 0.34 +0.7 384,148 + Echvi_0356 0.34 -0.2 384,148 + Echvi_0356 0.34 -0.6 384,148 + Echvi_0356 0.34 +0.5 384,149 - Echvi_0356 0.34 -1.8 384,149 - Echvi_0356 0.34 -1.3 384,149 - Echvi_0356 0.34 +0.0 384,149 - Echvi_0356 0.34 -2.5 384,149 - Echvi_0356 0.34 +0.7 384,161 - Echvi_0356 0.35 -1.6 384,247 + Echvi_0356 0.41 +0.2 384,380 + Echvi_0356 0.51 -0.8 384,444 - Echvi_0356 0.55 -1.6 384,444 - Echvi_0356 0.55 -1.8 384,444 - Echvi_0356 0.55 +0.1 384,446 + Echvi_0356 0.55 -0.3 384,447 - Echvi_0356 0.55 -0.4 384,447 - Echvi_0356 0.55 +0.2 384,495 - Echvi_0356 0.59 -1.0 384,495 - Echvi_0356 0.59 +0.2
Or see this region's nucleotide sequence