Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0284 and Echvi_0285 are separated by 6 nucleotides Echvi_0285 and Echvi_0286 are separated by 17 nucleotides Echvi_0286 and Echvi_0287 are separated by 29 nucleotides Echvi_0287 and Echvi_0288 are separated by 134 nucleotides
Echvi_0284: Echvi_0284 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 296,150 to 296,716
_0284
Echvi_0285: Echvi_0285 - guanylate kinase, at 296,723 to 297,295
_0285
Echvi_0286: Echvi_0286 - hypothetical protein, at 297,313 to 297,585
_0286
Echvi_0287: Echvi_0287 - RNA polymerase sigma factor, sigma-70 family, at 297,615 to 298,205
_0287
Echvi_0288: Echvi_0288 - Lauroyl/myristoyl acyltransferase, at 298,340 to 299,176
_0288
Position (kb) 297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 296.725 kb on - strand at 296.725 kb on - strand at 296.725 kb on - strand at 297.457 kb on - strand, within Echvi_0286 at 297.635 kb on - strand at 297.775 kb on - strand, within Echvi_0287 at 297.775 kb on - strand, within Echvi_0287 at 297.823 kb on - strand, within Echvi_0287 at 297.835 kb on - strand, within Echvi_0287 at 297.873 kb on - strand, within Echvi_0287 at 297.876 kb on - strand, within Echvi_0287 at 297.876 kb on - strand, within Echvi_0287 at 298.055 kb on - strand, within Echvi_0287 at 298.055 kb on - strand, within Echvi_0287 at 298.140 kb on - strand, within Echvi_0287 at 298.236 kb on - strand at 298.321 kb on - strand at 298.321 kb on - strand at 298.385 kb on + strand at 298.386 kb on - strand at 298.387 kb on + strand at 298.387 kb on + strand at 298.387 kb on + strand at 298.555 kb on + strand, within Echvi_0288 at 298.617 kb on + strand, within Echvi_0288 at 298.660 kb on + strand, within Echvi_0288 at 298.660 kb on + strand, within Echvi_0288 at 298.660 kb on + strand, within Echvi_0288 at 298.736 kb on + strand, within Echvi_0288 at 298.737 kb on - strand, within Echvi_0288 at 298.867 kb on - strand, within Echvi_0288 at 298.990 kb on + strand, within Echvi_0288 at 299.028 kb on - strand, within Echvi_0288 at 299.028 kb on - strand, within Echvi_0288 at 299.029 kb on + strand, within Echvi_0288 at 299.081 kb on - strand, within Echvi_0288 at 299.087 kb on - strand, within Echvi_0288 at 299.087 kb on - strand, within Echvi_0288 at 299.110 kb on - strand at 299.141 kb on + strand at 299.141 kb on + strand at 299.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 296,725 - +1.5 296,725 - +2.1 296,725 - +0.7 297,457 - Echvi_0286 0.53 +1.6 297,635 - -1.4 297,775 - Echvi_0287 0.27 -1.1 297,775 - Echvi_0287 0.27 -0.9 297,823 - Echvi_0287 0.35 -1.3 297,835 - Echvi_0287 0.37 -1.7 297,873 - Echvi_0287 0.44 -1.2 297,876 - Echvi_0287 0.44 -2.9 297,876 - Echvi_0287 0.44 -0.9 298,055 - Echvi_0287 0.74 -1.1 298,055 - Echvi_0287 0.74 -2.3 298,140 - Echvi_0287 0.89 -0.2 298,236 - +0.4 298,321 - +1.1 298,321 - +0.1 298,385 + -1.0 298,386 - -1.3 298,387 + -0.3 298,387 + +0.4 298,387 + +0.5 298,555 + Echvi_0288 0.26 -1.3 298,617 + Echvi_0288 0.33 -0.9 298,660 + Echvi_0288 0.38 +0.7 298,660 + Echvi_0288 0.38 -0.0 298,660 + Echvi_0288 0.38 -0.6 298,736 + Echvi_0288 0.47 +0.2 298,737 - Echvi_0288 0.47 -0.3 298,867 - Echvi_0288 0.63 +0.1 298,990 + Echvi_0288 0.78 +0.5 299,028 - Echvi_0288 0.82 +0.8 299,028 - Echvi_0288 0.82 -0.5 299,029 + Echvi_0288 0.82 -0.9 299,081 - Echvi_0288 0.89 +1.4 299,087 - Echvi_0288 0.89 -1.4 299,087 - Echvi_0288 0.89 +0.2 299,110 - -0.1 299,141 + +0.6 299,141 + +1.1 299,177 + +0.2
Or see this region's nucleotide sequence