Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0038

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0036 and Echvi_0037 are separated by 31 nucleotidesEchvi_0037 and Echvi_0038 overlap by 4 nucleotidesEchvi_0038 and Echvi_0039 are separated by 12 nucleotidesEchvi_0039 and Echvi_0040 are separated by 80 nucleotides Echvi_0036: Echvi_0036 - Protein of unknown function (DUF2795)., at 34,988 to 35,209 _0036 Echvi_0037: Echvi_0037 - Response regulator of the LytR/AlgR family, at 35,241 to 35,978 _0037 Echvi_0038: Echvi_0038 - Putative regulator of cell autolysis, at 35,975 to 37,018 _0038 Echvi_0039: Echvi_0039 - Predicted membrane protein (DUF2154)., at 37,031 to 37,831 _0039 Echvi_0040: Echvi_0040 - hypothetical protein, at 37,912 to 38,079 _0040 Position (kb) 35 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2 3at 35.242 kb on + strandat 35.242 kb on + strandat 35.242 kb on + strandat 35.273 kb on + strandat 35.309 kb on + strandat 35.354 kb on + strand, within Echvi_0037at 35.354 kb on + strand, within Echvi_0037at 35.355 kb on - strand, within Echvi_0037at 35.376 kb on - strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.388 kb on + strand, within Echvi_0037at 35.451 kb on - strand, within Echvi_0037at 35.452 kb on + strand, within Echvi_0037at 35.570 kb on - strand, within Echvi_0037at 35.570 kb on - strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.728 kb on + strand, within Echvi_0037at 35.920 kb on + strandat 35.960 kb on + strandat 35.960 kb on + strandat 35.961 kb on - strandat 35.961 kb on - strandat 35.996 kb on + strandat 35.997 kb on - strandat 36.003 kb on - strandat 36.014 kb on - strandat 36.014 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.136 kb on - strand, within Echvi_0038at 36.162 kb on + strand, within Echvi_0038at 36.209 kb on - strand, within Echvi_0038at 36.260 kb on + strand, within Echvi_0038at 36.332 kb on + strand, within Echvi_0038at 36.349 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.386 kb on + strand, within Echvi_0038at 36.498 kb on - strand, within Echvi_0038at 36.502 kb on + strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.505 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.642 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.944 kb on + strandat 36.944 kb on + strandat 36.945 kb on - strandat 37.116 kb on + strand, within Echvi_0039at 37.117 kb on - strand, within Echvi_0039at 37.117 kb on - strand, within Echvi_0039at 37.117 kb on - strand, within Echvi_0039at 37.147 kb on + strand, within Echvi_0039at 37.148 kb on - strand, within Echvi_0039at 37.257 kb on - strand, within Echvi_0039at 37.381 kb on + strand, within Echvi_0039at 37.566 kb on + strand, within Echvi_0039at 37.588 kb on + strand, within Echvi_0039at 37.589 kb on - strand, within Echvi_0039at 37.589 kb on - strand, within Echvi_0039at 37.678 kb on + strand, within Echvi_0039at 37.715 kb on + strand, within Echvi_0039at 37.775 kb on + strandat 37.776 kb on - strandat 37.776 kb on - strandat 37.778 kb on + strandat 37.779 kb on - strandat 37.779 kb on - strandat 37.840 kb on + strandat 37.892 kb on + strandat 37.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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35,242 + +0.1
35,242 + -0.2
35,242 + -0.3
35,273 + -0.6
35,309 + -0.2
35,354 + Echvi_0037 0.15 +1.7
35,354 + Echvi_0037 0.15 +0.8
35,355 - Echvi_0037 0.15 -0.7
35,376 - Echvi_0037 0.18 -2.1
35,377 + Echvi_0037 0.18 +0.1
35,377 + Echvi_0037 0.18 -0.6
35,377 + Echvi_0037 0.18 -0.7
35,377 + Echvi_0037 0.18 -0.0
35,378 - Echvi_0037 0.19 -0.3
35,378 - Echvi_0037 0.19 -2.0
35,378 - Echvi_0037 0.19 -0.7
35,378 - Echvi_0037 0.19 -1.9
35,378 - Echvi_0037 0.19 +0.3
35,388 + Echvi_0037 0.20 -1.3
35,451 - Echvi_0037 0.28 +0.5
35,452 + Echvi_0037 0.29 +0.4
35,570 - Echvi_0037 0.45 -0.5
35,570 - Echvi_0037 0.45 +0.3
35,604 + Echvi_0037 0.49 -1.1
35,604 + Echvi_0037 0.49 -0.1
35,604 + Echvi_0037 0.49 +0.1
35,728 + Echvi_0037 0.66 -0.7
35,920 + -1.2
35,960 + -0.0
35,960 + +1.1
35,961 - -0.8
35,961 - +0.5
35,996 + -0.3
35,997 - +2.0
36,003 - +1.9
36,014 - +2.3
36,014 - +2.9
36,070 - +2.6
36,070 - +0.7
36,070 - +1.4
36,070 - +2.7
36,136 - Echvi_0038 0.15 +2.4
36,162 + Echvi_0038 0.18 -0.1
36,209 - Echvi_0038 0.22 +1.6
36,260 + Echvi_0038 0.27 -0.3
36,332 + Echvi_0038 0.34 +0.0
36,349 + Echvi_0038 0.36 -0.3
36,368 + Echvi_0038 0.38 +1.7
36,368 + Echvi_0038 0.38 -1.0
36,386 + Echvi_0038 0.39 +1.0
36,498 - Echvi_0038 0.50 +2.3
36,502 + Echvi_0038 0.50 -0.1
36,503 - Echvi_0038 0.51 +2.6
36,503 - Echvi_0038 0.51 +2.2
36,505 + Echvi_0038 0.51 -0.4
36,640 + Echvi_0038 0.64 -0.7
36,640 + Echvi_0038 0.64 -0.3
36,642 + Echvi_0038 0.64 -1.2
36,879 + Echvi_0038 0.87 +0.8
36,879 + Echvi_0038 0.87 +0.9
36,879 + Echvi_0038 0.87 +0.3
36,879 + Echvi_0038 0.87 -1.1
36,880 - Echvi_0038 0.87 +1.4
36,880 - Echvi_0038 0.87 +0.7
36,880 - Echvi_0038 0.87 +1.6
36,880 - Echvi_0038 0.87 +1.0
36,944 + +0.3
36,944 + +0.0
36,945 - +1.9
37,116 + Echvi_0039 0.11 +0.6
37,117 - Echvi_0039 0.11 +3.3
37,117 - Echvi_0039 0.11 +3.6
37,117 - Echvi_0039 0.11 +3.7
37,147 + Echvi_0039 0.14 -1.1
37,148 - Echvi_0039 0.15 +3.7
37,257 - Echvi_0039 0.28 +3.7
37,381 + Echvi_0039 0.44 +0.3
37,566 + Echvi_0039 0.67 -0.8
37,588 + Echvi_0039 0.70 -0.1
37,589 - Echvi_0039 0.70 +2.9
37,589 - Echvi_0039 0.70 +2.8
37,678 + Echvi_0039 0.81 +0.3
37,715 + Echvi_0039 0.85 +1.2
37,775 + +0.3
37,776 - +1.8
37,776 - +1.1
37,778 + +0.3
37,779 - +2.6
37,779 - -0.6
37,840 + +0.2
37,892 + -0.3
37,895 - +2.2

Or see this region's nucleotide sequence