Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5487 and Atu5488 are separated by 13 nucleotides Atu5488 and Atu5489 are separated by 141 nucleotides Atu5489 and Atu5490 are separated by 124 nucleotides Atu5490 and Atu8052 are separated by 191 nucleotides
Atu5487: Atu5487 - hypothetical protein, at 477,832 to 478,152
Atu5487
Atu5488: Atu5488 - hypothetical protein, at 478,166 to 478,930
Atu5488
Atu5489: Atu5489 - hypothetical protein, at 479,072 to 479,299
Atu5489
Atu5490: Atu5490 - ECF family RNA polymerase sigma factor, at 479,424 to 479,966
Atu5490
Atu8052: Atu8052 - hypothetical protein, at 480,158 to 480,295
Atu8052
Position (kb) 479
480 Strain fitness (log2 ratio) -2
-1
0
1 at 478.078 kb on - strand, within Atu5487 at 478.139 kb on - strand at 478.238 kb on + strand at 478.306 kb on - strand, within Atu5488 at 478.377 kb on - strand, within Atu5488 at 478.429 kb on - strand, within Atu5488 at 478.455 kb on - strand, within Atu5488 at 478.467 kb on - strand, within Atu5488 at 478.513 kb on - strand, within Atu5488 at 478.546 kb on + strand, within Atu5488 at 478.551 kb on + strand, within Atu5488 at 478.556 kb on + strand, within Atu5488 at 478.556 kb on + strand, within Atu5488 at 478.556 kb on + strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.609 kb on + strand, within Atu5488 at 478.609 kb on + strand, within Atu5488 at 478.611 kb on + strand, within Atu5488 at 478.611 kb on + strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.622 kb on + strand, within Atu5488 at 478.653 kb on + strand, within Atu5488 at 478.676 kb on + strand, within Atu5488 at 478.736 kb on + strand, within Atu5488 at 478.761 kb on + strand, within Atu5488 at 478.769 kb on - strand, within Atu5488 at 478.809 kb on - strand, within Atu5488 at 478.870 kb on + strand at 478.940 kb on + strand at 478.940 kb on + strand at 478.940 kb on + strand at 478.940 kb on + strand at 478.948 kb on - strand at 478.948 kb on - strand at 478.989 kb on + strand at 479.066 kb on + strand at 479.122 kb on + strand, within Atu5489 at 479.139 kb on - strand, within Atu5489 at 479.151 kb on + strand, within Atu5489 at 479.153 kb on + strand, within Atu5489 at 479.330 kb on - strand at 479.434 kb on + strand at 479.442 kb on - strand at 479.476 kb on - strand at 479.608 kb on + strand, within Atu5490 at 479.617 kb on - strand, within Atu5490 at 479.624 kb on - strand, within Atu5490 at 479.627 kb on - strand, within Atu5490 at 479.644 kb on + strand, within Atu5490 at 479.660 kb on + strand, within Atu5490 at 479.660 kb on + strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.702 kb on + strand, within Atu5490 at 479.716 kb on - strand, within Atu5490 at 479.723 kb on - strand, within Atu5490 at 479.775 kb on + strand, within Atu5490 at 479.778 kb on - strand, within Atu5490 at 479.786 kb on + strand, within Atu5490 at 479.808 kb on + strand, within Atu5490 at 479.905 kb on + strand, within Atu5490 at 479.931 kb on + strand at 480.015 kb on + strand at 480.066 kb on - strand at 480.066 kb on - strand at 480.224 kb on + strand, within Atu8052 at 480.242 kb on + strand, within Atu8052
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 478,078 - Atu5487 0.77 +0.3 478,139 - -1.4 478,238 + +0.0 478,306 - Atu5488 0.18 +0.0 478,377 - Atu5488 0.28 -1.4 478,429 - Atu5488 0.34 -0.9 478,455 - Atu5488 0.38 +0.1 478,467 - Atu5488 0.39 +0.2 478,513 - Atu5488 0.45 +0.5 478,546 + Atu5488 0.50 +0.7 478,551 + Atu5488 0.50 -0.5 478,556 + Atu5488 0.51 -0.0 478,556 + Atu5488 0.51 +0.9 478,556 + Atu5488 0.51 +0.1 478,564 - Atu5488 0.52 +1.0 478,564 - Atu5488 0.52 -0.6 478,564 - Atu5488 0.52 +0.5 478,564 - Atu5488 0.52 +0.2 478,609 + Atu5488 0.58 -0.5 478,609 + Atu5488 0.58 +0.1 478,611 + Atu5488 0.58 +0.7 478,611 + Atu5488 0.58 +0.3 478,617 - Atu5488 0.59 +0.5 478,617 - Atu5488 0.59 +0.5 478,617 - Atu5488 0.59 -1.1 478,617 - Atu5488 0.59 -1.4 478,617 - Atu5488 0.59 +0.8 478,622 + Atu5488 0.60 -0.0 478,653 + Atu5488 0.64 -0.4 478,676 + Atu5488 0.67 -0.4 478,736 + Atu5488 0.75 +0.3 478,761 + Atu5488 0.78 -0.4 478,769 - Atu5488 0.79 +0.3 478,809 - Atu5488 0.84 +0.2 478,870 + -0.4 478,940 + -0.0 478,940 + -0.2 478,940 + +0.3 478,940 + +0.7 478,948 - -0.8 478,948 - +0.4 478,989 + -1.0 479,066 + +1.3 479,122 + Atu5489 0.22 +1.3 479,139 - Atu5489 0.29 +0.1 479,151 + Atu5489 0.35 +1.7 479,153 + Atu5489 0.36 +0.7 479,330 - -1.3 479,434 + +0.3 479,442 - -1.0 479,476 - +0.7 479,608 + Atu5490 0.34 +0.6 479,617 - Atu5490 0.36 +0.5 479,624 - Atu5490 0.37 -0.2 479,627 - Atu5490 0.37 -1.0 479,644 + Atu5490 0.41 +0.9 479,660 + Atu5490 0.43 -1.7 479,660 + Atu5490 0.43 +1.7 479,668 - Atu5490 0.45 +0.3 479,668 - Atu5490 0.45 -2.1 479,668 - Atu5490 0.45 +0.4 479,668 - Atu5490 0.45 +0.5 479,668 - Atu5490 0.45 -0.2 479,702 + Atu5490 0.51 +0.3 479,716 - Atu5490 0.54 +0.6 479,723 - Atu5490 0.55 +0.5 479,775 + Atu5490 0.65 -0.0 479,778 - Atu5490 0.65 +0.5 479,786 + Atu5490 0.67 +1.3 479,808 + Atu5490 0.71 +0.1 479,905 + Atu5490 0.89 -0.3 479,931 + -0.3 480,015 + +0.3 480,066 - -0.3 480,066 - +0.6 480,224 + Atu8052 0.48 +1.6 480,242 + Atu8052 0.61 +0.4
Or see this region's nucleotide sequence