Strain Fitness in Agrobacterium fabrum C58 around Atu3880

Experiment: Ribitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3879 and Atu3880 are separated by 12 nucleotidesAtu3880 and Atu3881 are separated by 72 nucleotides Atu3879: Atu3879 - sugar ABC transporter permease, at 974,032 to 975,033 Atu3879 Atu3880: Atu3880 - sugar ABC transporter ATPase, at 975,046 to 976,566 Atu3880 Atu3881: Atu3881 - sugar ABC transporter substrate-binding protein, at 976,639 to 977,652 Atu3881 Position (kb) 975 976 977Strain fitness (log2 ratio) -2 -1 0 1 2at 974.050 kb on - strandat 974.163 kb on - strand, within Atu3879at 974.218 kb on + strand, within Atu3879at 974.234 kb on + strand, within Atu3879at 974.255 kb on - strand, within Atu3879at 974.315 kb on + strand, within Atu3879at 974.317 kb on + strand, within Atu3879at 974.325 kb on - strand, within Atu3879at 974.387 kb on + strand, within Atu3879at 974.387 kb on + strand, within Atu3879at 974.405 kb on + strand, within Atu3879at 974.413 kb on - strand, within Atu3879at 974.415 kb on - strand, within Atu3879at 974.415 kb on - strand, within Atu3879at 974.453 kb on + strand, within Atu3879at 974.457 kb on - strand, within Atu3879at 974.508 kb on - strand, within Atu3879at 974.546 kb on - strand, within Atu3879at 974.551 kb on - strand, within Atu3879at 974.588 kb on - strand, within Atu3879at 974.609 kb on - strand, within Atu3879at 974.647 kb on + strand, within Atu3879at 974.715 kb on + strand, within Atu3879at 974.731 kb on - strand, within Atu3879at 974.731 kb on - strand, within Atu3879at 974.828 kb on - strand, within Atu3879at 974.855 kb on + strand, within Atu3879at 974.948 kb on - strandat 974.971 kb on + strandat 974.975 kb on - strandat 974.979 kb on - strandat 975.007 kb on + strandat 975.007 kb on + strandat 975.014 kb on - strandat 975.043 kb on + strandat 975.119 kb on + strandat 975.136 kb on + strandat 975.190 kb on - strandat 975.210 kb on - strand, within Atu3880at 975.220 kb on + strand, within Atu3880at 975.273 kb on + strand, within Atu3880at 975.273 kb on + strand, within Atu3880at 975.337 kb on - strand, within Atu3880at 975.347 kb on - strand, within Atu3880at 975.364 kb on + strand, within Atu3880at 975.370 kb on + strand, within Atu3880at 975.372 kb on - strand, within Atu3880at 975.405 kb on + strand, within Atu3880at 975.624 kb on + strand, within Atu3880at 975.717 kb on - strand, within Atu3880at 975.907 kb on + strand, within Atu3880at 975.989 kb on + strand, within Atu3880at 976.029 kb on - strand, within Atu3880at 976.050 kb on - strand, within Atu3880at 976.051 kb on - strand, within Atu3880at 976.080 kb on + strand, within Atu3880at 976.087 kb on + strand, within Atu3880at 976.235 kb on + strand, within Atu3880at 976.240 kb on + strand, within Atu3880at 976.248 kb on - strand, within Atu3880at 976.267 kb on - strand, within Atu3880at 976.312 kb on + strand, within Atu3880at 976.556 kb on + strandat 976.561 kb on + strandat 976.612 kb on - strandat 976.687 kb on - strandat 976.687 kb on - strandat 976.749 kb on + strand, within Atu3881at 976.757 kb on - strand, within Atu3881at 976.771 kb on + strand, within Atu3881at 976.779 kb on - strand, within Atu3881at 976.827 kb on - strand, within Atu3881at 976.875 kb on + strand, within Atu3881at 976.953 kb on - strand, within Atu3881at 976.992 kb on + strand, within Atu3881at 977.000 kb on - strand, within Atu3881at 977.005 kb on + strand, within Atu3881at 977.237 kb on - strand, within Atu3881at 977.239 kb on + strand, within Atu3881at 977.247 kb on - strand, within Atu3881at 977.424 kb on - strand, within Atu3881at 977.442 kb on - strand, within Atu3881at 977.472 kb on + strand, within Atu3881at 977.472 kb on + strand, within Atu3881at 977.498 kb on + strand, within Atu3881at 977.498 kb on + strand, within Atu3881at 977.505 kb on - strand, within Atu3881at 977.506 kb on - strand, within Atu3881

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Per-strain Table

Position Strand Gene LocusTag Fraction Ribitol (C)
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974,050 - +1.0
974,163 - Atu3879 0.13 -0.5
974,218 + Atu3879 0.19 +0.1
974,234 + Atu3879 0.20 -1.1
974,255 - Atu3879 0.22 +0.8
974,315 + Atu3879 0.28 -0.8
974,317 + Atu3879 0.28 -0.2
974,325 - Atu3879 0.29 +0.0
974,387 + Atu3879 0.35 -0.6
974,387 + Atu3879 0.35 -0.2
974,405 + Atu3879 0.37 -0.9
974,413 - Atu3879 0.38 -0.1
974,415 - Atu3879 0.38 -0.5
974,415 - Atu3879 0.38 -0.4
974,453 + Atu3879 0.42 -0.3
974,457 - Atu3879 0.42 -0.0
974,508 - Atu3879 0.48 -0.1
974,546 - Atu3879 0.51 -0.1
974,551 - Atu3879 0.52 +0.0
974,588 - Atu3879 0.55 -0.1
974,609 - Atu3879 0.58 +0.4
974,647 + Atu3879 0.61 +0.6
974,715 + Atu3879 0.68 +2.0
974,731 - Atu3879 0.70 +0.1
974,731 - Atu3879 0.70 +0.5
974,828 - Atu3879 0.79 -1.1
974,855 + Atu3879 0.82 +0.1
974,948 - -0.2
974,971 + +0.4
974,975 - +0.2
974,979 - +0.3
975,007 + +0.1
975,007 + -0.3
975,014 - -0.5
975,043 + +0.2
975,119 + +0.3
975,136 + -0.1
975,190 - -0.1
975,210 - Atu3880 0.11 -0.2
975,220 + Atu3880 0.11 -0.9
975,273 + Atu3880 0.15 -1.1
975,273 + Atu3880 0.15 -0.1
975,337 - Atu3880 0.19 +0.8
975,347 - Atu3880 0.20 +0.1
975,364 + Atu3880 0.21 -0.2
975,370 + Atu3880 0.21 +0.2
975,372 - Atu3880 0.21 +0.3
975,405 + Atu3880 0.24 -0.9
975,624 + Atu3880 0.38 +0.3
975,717 - Atu3880 0.44 -0.2
975,907 + Atu3880 0.57 +0.3
975,989 + Atu3880 0.62 -0.5
976,029 - Atu3880 0.65 +0.5
976,050 - Atu3880 0.66 +0.2
976,051 - Atu3880 0.66 -0.2
976,080 + Atu3880 0.68 -0.5
976,087 + Atu3880 0.68 +0.4
976,235 + Atu3880 0.78 +0.5
976,240 + Atu3880 0.79 -0.5
976,248 - Atu3880 0.79 +0.2
976,267 - Atu3880 0.80 +0.1
976,312 + Atu3880 0.83 -0.1
976,556 + -0.1
976,561 + -0.1
976,612 - -0.2
976,687 - -0.8
976,687 - +0.1
976,749 + Atu3881 0.11 +0.1
976,757 - Atu3881 0.12 -0.0
976,771 + Atu3881 0.13 -0.5
976,779 - Atu3881 0.14 +0.5
976,827 - Atu3881 0.19 -0.0
976,875 + Atu3881 0.23 -1.8
976,953 - Atu3881 0.31 +0.0
976,992 + Atu3881 0.35 -0.1
977,000 - Atu3881 0.36 +1.4
977,005 + Atu3881 0.36 +0.4
977,237 - Atu3881 0.59 +0.0
977,239 + Atu3881 0.59 +0.3
977,247 - Atu3881 0.60 -0.1
977,424 - Atu3881 0.77 -0.2
977,442 - Atu3881 0.79 +0.0
977,472 + Atu3881 0.82 +0.1
977,472 + Atu3881 0.82 +0.3
977,498 + Atu3881 0.85 -0.2
977,498 + Atu3881 0.85 +2.1
977,505 - Atu3881 0.85 -0.9
977,506 - Atu3881 0.86 +1.2

Or see this region's nucleotide sequence