Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3816 and Atu3817 are separated by 298 nucleotides Atu3817 and Atu3818 are separated by 129 nucleotides
Atu3816: Atu3816 - D-threo-aldose 1-dehydrogenase, at 911,329 to 912,375
Atu3816
Atu3817: Atu3817 - dehydratase, at 912,674 to 914,185
Atu3817
Atu3818: Atu3818 - ribose ABC transporter ATPase, at 914,315 to 915,814
Atu3818
Position (kb) 912
913
914
915 Strain fitness (log2 ratio) -2
-1
0
1 at 911.780 kb on + strand, within Atu3816 at 911.786 kb on + strand, within Atu3816 at 911.846 kb on + strand, within Atu3816 at 911.854 kb on - strand, within Atu3816 at 911.905 kb on - strand, within Atu3816 at 911.934 kb on + strand, within Atu3816 at 911.978 kb on - strand, within Atu3816 at 911.990 kb on - strand, within Atu3816 at 912.143 kb on - strand, within Atu3816 at 912.230 kb on + strand, within Atu3816 at 912.235 kb on + strand, within Atu3816 at 912.235 kb on + strand, within Atu3816 at 912.235 kb on + strand, within Atu3816 at 912.235 kb on + strand, within Atu3816 at 912.238 kb on - strand, within Atu3816 at 912.243 kb on - strand, within Atu3816 at 912.243 kb on - strand, within Atu3816 at 912.344 kb on - strand at 912.443 kb on - strand at 912.457 kb on + strand at 912.578 kb on + strand at 912.580 kb on + strand at 912.580 kb on + strand at 912.656 kb on + strand at 912.664 kb on - strand at 912.684 kb on + strand at 912.684 kb on + strand at 912.692 kb on - strand at 912.720 kb on + strand at 912.739 kb on + strand at 912.739 kb on + strand at 912.739 kb on + strand at 912.745 kb on + strand at 912.747 kb on - strand at 912.750 kb on + strand at 912.756 kb on + strand at 912.764 kb on - strand at 912.771 kb on + strand at 912.771 kb on + strand at 912.800 kb on - strand at 912.853 kb on - strand, within Atu3817 at 913.004 kb on - strand, within Atu3817 at 913.051 kb on - strand, within Atu3817 at 913.054 kb on + strand, within Atu3817 at 913.251 kb on - strand, within Atu3817 at 913.307 kb on - strand, within Atu3817 at 913.322 kb on - strand, within Atu3817 at 913.460 kb on - strand, within Atu3817 at 913.460 kb on - strand, within Atu3817 at 913.607 kb on + strand, within Atu3817 at 913.671 kb on + strand, within Atu3817 at 913.678 kb on - strand, within Atu3817 at 913.816 kb on - strand, within Atu3817 at 913.816 kb on - strand, within Atu3817 at 913.894 kb on + strand, within Atu3817 at 913.934 kb on - strand, within Atu3817 at 913.965 kb on - strand, within Atu3817 at 913.980 kb on + strand, within Atu3817 at 914.023 kb on - strand, within Atu3817 at 914.232 kb on - strand at 914.319 kb on - strand at 914.370 kb on + strand at 914.402 kb on + strand at 914.402 kb on + strand at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.533 kb on - strand, within Atu3818 at 914.536 kb on + strand, within Atu3818 at 914.600 kb on + strand, within Atu3818 at 914.610 kb on - strand, within Atu3818 at 914.729 kb on - strand, within Atu3818 at 914.776 kb on + strand, within Atu3818 at 914.834 kb on - strand, within Atu3818 at 914.834 kb on - strand, within Atu3818 at 914.952 kb on + strand, within Atu3818 at 914.960 kb on - strand, within Atu3818 at 915.024 kb on + strand, within Atu3818 at 915.089 kb on - strand, within Atu3818
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 911,780 + Atu3816 0.43 -0.3 911,786 + Atu3816 0.44 +0.9 911,846 + Atu3816 0.49 +0.1 911,854 - Atu3816 0.50 +0.6 911,905 - Atu3816 0.55 +0.7 911,934 + Atu3816 0.58 +0.0 911,978 - Atu3816 0.62 -1.6 911,990 - Atu3816 0.63 -0.1 912,143 - Atu3816 0.78 +0.6 912,230 + Atu3816 0.86 +0.1 912,235 + Atu3816 0.87 +1.4 912,235 + Atu3816 0.87 -0.1 912,235 + Atu3816 0.87 +0.2 912,235 + Atu3816 0.87 -0.3 912,238 - Atu3816 0.87 +0.7 912,243 - Atu3816 0.87 +0.5 912,243 - Atu3816 0.87 +0.2 912,344 - +0.5 912,443 - -0.3 912,457 + +0.1 912,578 + -0.1 912,580 + +0.1 912,580 + +0.0 912,656 + -1.8 912,664 - -0.1 912,684 + -0.1 912,684 + +0.2 912,692 - -0.1 912,720 + -1.6 912,739 + -0.0 912,739 + -0.0 912,739 + +0.4 912,745 + -0.3 912,747 - -0.2 912,750 + +0.2 912,756 + -0.3 912,764 - +0.1 912,771 + +0.4 912,771 + -0.1 912,800 - -0.3 912,853 - Atu3817 0.12 -0.3 913,004 - Atu3817 0.22 +0.0 913,051 - Atu3817 0.25 +0.3 913,054 + Atu3817 0.25 +0.2 913,251 - Atu3817 0.38 -0.2 913,307 - Atu3817 0.42 -1.0 913,322 - Atu3817 0.43 -0.1 913,460 - Atu3817 0.52 +0.3 913,460 - Atu3817 0.52 +1.1 913,607 + Atu3817 0.62 +1.7 913,671 + Atu3817 0.66 -0.1 913,678 - Atu3817 0.66 +0.3 913,816 - Atu3817 0.76 -1.6 913,816 - Atu3817 0.76 -0.1 913,894 + Atu3817 0.81 +0.4 913,934 - Atu3817 0.83 -1.0 913,965 - Atu3817 0.85 +0.3 913,980 + Atu3817 0.86 +0.4 914,023 - Atu3817 0.89 +0.3 914,232 - -0.4 914,319 - +0.9 914,370 + +0.1 914,402 + -1.5 914,402 + +0.5 914,481 + Atu3818 0.11 -0.5 914,481 + Atu3818 0.11 -0.4 914,481 + Atu3818 0.11 -0.2 914,481 + Atu3818 0.11 +0.3 914,533 - Atu3818 0.15 -0.5 914,536 + Atu3818 0.15 -0.2 914,600 + Atu3818 0.19 +0.2 914,610 - Atu3818 0.20 +0.8 914,729 - Atu3818 0.28 +0.3 914,776 + Atu3818 0.31 +0.1 914,834 - Atu3818 0.35 +0.3 914,834 - Atu3818 0.35 +0.2 914,952 + Atu3818 0.42 +0.3 914,960 - Atu3818 0.43 -0.0 915,024 + Atu3818 0.47 -0.1 915,089 - Atu3818 0.52 +0.3
Or see this region's nucleotide sequence