Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3478 and Atu3479 are separated by 7 nucleotides Atu3479 and Atu3480 are separated by 1 nucleotides Atu3480 and Atu3481 overlap by 11 nucleotides
Atu3478: Atu3478 - 3-methylcrotonoyl-CoA carboxylase beta subunit, at 525,705 to 527,306
Atu3478
Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305
Atu3479
Atu3480: Atu3480 - hydroxymethylglutaryl-CoA lyase, at 529,307 to 530,233
Atu3480
Atu3481: Atu3481 - enoyl-CoA hydratase, at 530,223 to 530,999
Atu3481
Position (kb) 527
528
529
530 Strain fitness (log2 ratio) -2
-1
0
1
2 at 526.352 kb on + strand, within Atu3478 at 526.379 kb on - strand, within Atu3478 at 526.389 kb on + strand, within Atu3478 at 526.474 kb on - strand, within Atu3478 at 526.509 kb on - strand, within Atu3478 at 526.565 kb on + strand, within Atu3478 at 526.570 kb on + strand, within Atu3478 at 526.622 kb on - strand, within Atu3478 at 526.632 kb on - strand, within Atu3478 at 526.682 kb on - strand, within Atu3478 at 526.890 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 527.045 kb on + strand, within Atu3478 at 527.104 kb on + strand, within Atu3478 at 527.232 kb on + strand at 527.240 kb on - strand at 527.265 kb on - strand at 527.389 kb on - strand at 527.439 kb on + strand at 527.443 kb on - strand at 527.534 kb on + strand, within Atu3479 at 527.614 kb on + strand, within Atu3479 at 527.796 kb on - strand, within Atu3479 at 528.004 kb on + strand, within Atu3479 at 528.052 kb on - strand, within Atu3479 at 528.083 kb on - strand, within Atu3479 at 528.131 kb on + strand, within Atu3479 at 528.192 kb on + strand, within Atu3479 at 528.273 kb on + strand, within Atu3479 at 528.287 kb on - strand, within Atu3479 at 528.490 kb on + strand, within Atu3479 at 528.707 kb on + strand, within Atu3479 at 528.840 kb on - strand, within Atu3479 at 528.840 kb on - strand, within Atu3479 at 528.859 kb on - strand, within Atu3479 at 528.871 kb on + strand, within Atu3479 at 528.949 kb on - strand, within Atu3479 at 528.970 kb on + strand, within Atu3479 at 528.976 kb on + strand, within Atu3479 at 529.088 kb on + strand, within Atu3479 at 529.268 kb on + strand at 529.276 kb on - strand at 529.447 kb on - strand, within Atu3480 at 529.447 kb on - strand, within Atu3480 at 529.518 kb on - strand, within Atu3480 at 529.530 kb on - strand, within Atu3480 at 529.672 kb on - strand, within Atu3480 at 529.693 kb on + strand, within Atu3480 at 529.816 kb on - strand, within Atu3480 at 529.877 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.982 kb on + strand, within Atu3480 at 530.036 kb on - strand, within Atu3480 at 530.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 526,352 + Atu3478 0.40 -0.4 526,379 - Atu3478 0.42 -0.8 526,389 + Atu3478 0.43 +0.2 526,474 - Atu3478 0.48 +0.3 526,509 - Atu3478 0.50 -0.0 526,565 + Atu3478 0.54 -0.1 526,570 + Atu3478 0.54 -0.2 526,622 - Atu3478 0.57 +0.4 526,632 - Atu3478 0.58 -1.7 526,682 - Atu3478 0.61 +0.0 526,890 + Atu3478 0.74 +1.4 526,979 + Atu3478 0.80 +0.3 526,979 + Atu3478 0.80 +0.2 526,979 + Atu3478 0.80 -0.5 527,045 + Atu3478 0.84 +1.4 527,104 + Atu3478 0.87 -0.2 527,232 + +0.4 527,240 - +0.2 527,265 - +0.4 527,389 - +0.4 527,439 + -0.2 527,443 - -0.1 527,534 + Atu3479 0.11 -0.4 527,614 + Atu3479 0.15 -0.1 527,796 - Atu3479 0.24 -1.2 528,004 + Atu3479 0.35 -0.2 528,052 - Atu3479 0.37 +0.0 528,083 - Atu3479 0.39 +0.3 528,131 + Atu3479 0.41 +0.4 528,192 + Atu3479 0.44 -0.4 528,273 + Atu3479 0.48 +0.3 528,287 - Atu3479 0.49 +0.2 528,490 + Atu3479 0.59 -0.1 528,707 + Atu3479 0.70 -1.9 528,840 - Atu3479 0.77 +0.1 528,840 - Atu3479 0.77 +0.2 528,859 - Atu3479 0.78 +0.1 528,871 + Atu3479 0.78 -0.7 528,949 - Atu3479 0.82 +1.1 528,970 + Atu3479 0.83 +1.8 528,976 + Atu3479 0.83 -0.1 529,088 + Atu3479 0.89 -0.6 529,268 + +0.0 529,276 - +0.6 529,447 - Atu3480 0.15 +0.2 529,447 - Atu3480 0.15 +0.3 529,518 - Atu3480 0.23 -0.4 529,530 - Atu3480 0.24 -0.2 529,672 - Atu3480 0.39 -1.9 529,693 + Atu3480 0.42 +0.1 529,816 - Atu3480 0.55 +0.3 529,877 + Atu3480 0.61 +0.5 529,938 + Atu3480 0.68 +0.1 529,938 + Atu3480 0.68 +1.1 529,982 + Atu3480 0.73 -0.3 530,036 - Atu3480 0.79 -0.2 530,206 + -0.6
Or see this region's nucleotide sequence