Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3386 and Atu3387 are separated by 111 nucleotides Atu3387 and Atu3388 are separated by 211 nucleotides Atu3388 and Atu3389 overlap by 7 nucleotides
Atu3386: Atu3386 - two component sensor kinase, at 430,563 to 431,558
Atu3386
Atu3387: Atu3387 - sigma factor, at 431,670 to 432,170
Atu3387
Atu3388: Atu3388 - iron ABC transporter ATPase, at 432,382 to 433,134
Atu3388
Atu3389: Atu3389 - iron ABC transporter permease, at 433,128 to 434,195
Atu3389
Position (kb) 431
432
433 Strain fitness (log2 ratio) -1
0
1
2 at 430.710 kb on + strand, within Atu3386 at 430.732 kb on + strand, within Atu3386 at 430.732 kb on + strand, within Atu3386 at 430.740 kb on - strand, within Atu3386 at 430.775 kb on - strand, within Atu3386 at 430.826 kb on - strand, within Atu3386 at 430.917 kb on + strand, within Atu3386 at 431.058 kb on + strand, within Atu3386 at 431.074 kb on - strand, within Atu3386 at 431.134 kb on - strand, within Atu3386 at 431.188 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.233 kb on - strand, within Atu3386 at 431.233 kb on - strand, within Atu3386 at 431.481 kb on - strand at 431.556 kb on + strand at 431.657 kb on - strand at 431.823 kb on + strand, within Atu3387 at 432.058 kb on + strand, within Atu3387 at 432.077 kb on + strand, within Atu3387 at 432.089 kb on + strand, within Atu3387 at 432.121 kb on - strand at 432.121 kb on - strand at 432.121 kb on - strand at 432.178 kb on - strand at 432.217 kb on - strand at 432.232 kb on + strand at 432.240 kb on - strand at 432.317 kb on + strand at 432.317 kb on + strand at 432.405 kb on + strand at 432.413 kb on - strand at 432.423 kb on - strand at 432.455 kb on + strand at 432.552 kb on + strand, within Atu3388 at 432.667 kb on - strand, within Atu3388 at 432.835 kb on + strand, within Atu3388 at 432.868 kb on + strand, within Atu3388 at 432.868 kb on + strand, within Atu3388 at 432.876 kb on - strand, within Atu3388 at 432.876 kb on - strand, within Atu3388 at 432.962 kb on - strand, within Atu3388 at 432.989 kb on + strand, within Atu3388 at 432.991 kb on + strand, within Atu3388 at 433.058 kb on - strand, within Atu3388 at 433.070 kb on + strand at 433.078 kb on - strand at 433.080 kb on + strand at 433.092 kb on + strand at 433.101 kb on - strand at 433.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 430,710 + Atu3386 0.15 -1.0 430,732 + Atu3386 0.17 -0.0 430,732 + Atu3386 0.17 +1.0 430,740 - Atu3386 0.18 -0.3 430,775 - Atu3386 0.21 -1.1 430,826 - Atu3386 0.26 +2.2 430,917 + Atu3386 0.36 -0.1 431,058 + Atu3386 0.50 -0.1 431,074 - Atu3386 0.51 +0.4 431,134 - Atu3386 0.57 -0.0 431,188 + Atu3386 0.63 +0.8 431,225 + Atu3386 0.66 +0.3 431,225 + Atu3386 0.66 -0.5 431,225 + Atu3386 0.66 +0.9 431,225 + Atu3386 0.66 +0.0 431,225 + Atu3386 0.66 +0.1 431,233 - Atu3386 0.67 +0.0 431,233 - Atu3386 0.67 -0.4 431,481 - +0.8 431,556 + -0.3 431,657 - +0.7 431,823 + Atu3387 0.31 +0.1 432,058 + Atu3387 0.77 +0.6 432,077 + Atu3387 0.81 +1.4 432,089 + Atu3387 0.84 +1.0 432,121 - +0.6 432,121 - +0.2 432,121 - +1.0 432,178 - -1.1 432,217 - +1.4 432,232 + +0.4 432,240 - +0.2 432,317 + -0.5 432,317 + -0.4 432,405 + -0.1 432,413 - +0.1 432,423 - +0.6 432,455 + -0.4 432,552 + Atu3388 0.23 +1.7 432,667 - Atu3388 0.38 +0.1 432,835 + Atu3388 0.60 -0.0 432,868 + Atu3388 0.65 +0.2 432,868 + Atu3388 0.65 -1.1 432,876 - Atu3388 0.66 -0.4 432,876 - Atu3388 0.66 -0.2 432,962 - Atu3388 0.77 -0.2 432,989 + Atu3388 0.81 +0.3 432,991 + Atu3388 0.81 -0.1 433,058 - Atu3388 0.90 +0.3 433,070 + -0.0 433,078 - -0.1 433,080 + +0.1 433,092 + +0.6 433,101 - +1.1 433,111 - -0.2
Or see this region's nucleotide sequence