Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3161 and Atu3162 are separated by 151 nucleotides Atu3162 and Atu3163 are separated by 114 nucleotides
Atu3161: Atu3161 - hypothetical protein, at 169,398 to 170,867
Atu3161
Atu3162: Atu3162 - LacI family transcriptional regulator, at 171,019 to 172,032
Atu3162
Atu3163: Atu3163 - zinc-binding dehydrogenase, at 172,147 to 173,157
Atu3163
Position (kb) 171
172
173 Strain fitness (log2 ratio) -1
0
1
2 at 170.037 kb on + strand, within Atu3161 at 170.037 kb on + strand, within Atu3161 at 170.037 kb on + strand, within Atu3161 at 170.045 kb on - strand, within Atu3161 at 170.045 kb on - strand, within Atu3161 at 170.128 kb on + strand, within Atu3161 at 170.191 kb on + strand, within Atu3161 at 170.191 kb on + strand, within Atu3161 at 170.239 kb on - strand, within Atu3161 at 170.249 kb on + strand, within Atu3161 at 170.282 kb on - strand, within Atu3161 at 170.305 kb on + strand, within Atu3161 at 170.305 kb on + strand, within Atu3161 at 170.317 kb on + strand, within Atu3161 at 170.317 kb on + strand, within Atu3161 at 170.361 kb on - strand, within Atu3161 at 170.397 kb on - strand, within Atu3161 at 170.506 kb on + strand, within Atu3161 at 170.551 kb on + strand, within Atu3161 at 170.686 kb on + strand, within Atu3161 at 170.694 kb on - strand, within Atu3161 at 170.710 kb on + strand, within Atu3161 at 170.729 kb on - strand at 170.795 kb on + strand at 170.817 kb on - strand at 170.848 kb on - strand at 170.901 kb on + strand at 170.901 kb on + strand at 170.909 kb on - strand at 170.949 kb on + strand at 170.949 kb on + strand at 170.955 kb on - strand at 170.957 kb on - strand at 171.044 kb on - strand at 171.044 kb on - strand at 171.044 kb on - strand at 171.055 kb on - strand at 171.122 kb on + strand, within Atu3162 at 171.122 kb on + strand, within Atu3162 at 171.201 kb on + strand, within Atu3162 at 171.253 kb on - strand, within Atu3162 at 171.335 kb on + strand, within Atu3162 at 171.338 kb on - strand, within Atu3162 at 171.338 kb on - strand, within Atu3162 at 171.415 kb on - strand, within Atu3162 at 171.448 kb on + strand, within Atu3162 at 171.487 kb on - strand, within Atu3162 at 171.487 kb on - strand, within Atu3162 at 171.595 kb on - strand, within Atu3162 at 171.713 kb on - strand, within Atu3162 at 171.774 kb on - strand, within Atu3162 at 171.811 kb on - strand, within Atu3162 at 171.890 kb on - strand, within Atu3162 at 172.086 kb on + strand at 172.094 kb on - strand at 172.396 kb on + strand, within Atu3163 at 172.396 kb on + strand, within Atu3163 at 172.404 kb on - strand, within Atu3163 at 172.516 kb on + strand, within Atu3163 at 172.663 kb on + strand, within Atu3163 at 172.751 kb on - strand, within Atu3163 at 172.785 kb on - strand, within Atu3163 at 172.801 kb on - strand, within Atu3163 at 172.854 kb on - strand, within Atu3163 at 172.885 kb on + strand, within Atu3163 at 172.889 kb on + strand, within Atu3163 at 172.928 kb on + strand, within Atu3163 at 172.928 kb on + strand, within Atu3163 at 172.958 kb on + strand, within Atu3163 at 173.006 kb on - strand, within Atu3163 at 173.031 kb on + strand, within Atu3163
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 170,037 + Atu3161 0.43 -0.3 170,037 + Atu3161 0.43 +0.3 170,037 + Atu3161 0.43 +0.1 170,045 - Atu3161 0.44 -0.2 170,045 - Atu3161 0.44 +0.2 170,128 + Atu3161 0.50 +0.1 170,191 + Atu3161 0.54 -0.2 170,191 + Atu3161 0.54 +0.1 170,239 - Atu3161 0.57 -0.3 170,249 + Atu3161 0.58 +0.4 170,282 - Atu3161 0.60 +0.8 170,305 + Atu3161 0.62 -0.1 170,305 + Atu3161 0.62 +1.2 170,317 + Atu3161 0.63 +0.1 170,317 + Atu3161 0.63 -0.5 170,361 - Atu3161 0.66 -1.2 170,397 - Atu3161 0.68 -0.5 170,506 + Atu3161 0.75 +0.2 170,551 + Atu3161 0.78 -0.5 170,686 + Atu3161 0.88 +0.1 170,694 - Atu3161 0.88 +0.7 170,710 + Atu3161 0.89 +0.1 170,729 - -0.8 170,795 + -0.0 170,817 - -0.3 170,848 - +0.1 170,901 + +0.3 170,901 + -0.3 170,909 - -0.2 170,949 + +0.1 170,949 + +0.5 170,955 - +0.5 170,957 - -0.2 171,044 - +1.5 171,044 - +1.8 171,044 - +0.2 171,055 - +0.0 171,122 + Atu3162 0.10 -0.2 171,122 + Atu3162 0.10 +0.5 171,201 + Atu3162 0.18 +0.2 171,253 - Atu3162 0.23 +0.1 171,335 + Atu3162 0.31 +0.5 171,338 - Atu3162 0.31 -1.5 171,338 - Atu3162 0.31 +0.3 171,415 - Atu3162 0.39 +0.5 171,448 + Atu3162 0.42 +0.7 171,487 - Atu3162 0.46 +0.4 171,487 - Atu3162 0.46 +0.5 171,595 - Atu3162 0.57 -0.1 171,713 - Atu3162 0.68 +0.2 171,774 - Atu3162 0.74 +0.7 171,811 - Atu3162 0.78 +1.5 171,890 - Atu3162 0.86 +0.8 172,086 + -0.2 172,094 - +0.7 172,396 + Atu3163 0.25 +0.0 172,396 + Atu3163 0.25 -0.3 172,404 - Atu3163 0.25 +0.1 172,516 + Atu3163 0.36 -0.7 172,663 + Atu3163 0.51 +0.1 172,751 - Atu3163 0.60 -0.4 172,785 - Atu3163 0.63 +0.4 172,801 - Atu3163 0.65 -0.9 172,854 - Atu3163 0.70 -0.1 172,885 + Atu3163 0.73 +0.3 172,889 + Atu3163 0.73 -0.1 172,928 + Atu3163 0.77 +0.1 172,928 + Atu3163 0.77 +0.7 172,958 + Atu3163 0.80 +0.1 173,006 - Atu3163 0.85 -0.1 173,031 + Atu3163 0.87 +0.2
Or see this region's nucleotide sequence