Strain Fitness in Agrobacterium fabrum C58 around Atu1327

Experiment: Ribitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1325 and Atu1326 overlap by 4 nucleotidesAtu1326 and Atu1327 are separated by 109 nucleotidesAtu1327 and Atu1328 are separated by 131 nucleotidesAtu1328 and Atu1329 are separated by 13 nucleotides Atu1325: Atu1325 - acetyltransferase, at 1,314,168 to 1,314,665 Atu1325 Atu1326: Atu1326 - acetyltransferase, at 1,314,662 to 1,315,135 Atu1326 Atu1327: Atu1327 - NADH-ubiquinone oxidoreductase, at 1,315,245 to 1,315,643 Atu1327 Atu1328: Atu1328 - hypothetical protein, at 1,315,775 to 1,316,212 Atu1328 Atu1329: Atu1329 - leucyl/phenylalanyl-tRNA-protein transferase, at 1,316,226 to 1,316,840 Atu1329 Position (kb) 1315 1316Strain fitness (log2 ratio) -1 0 1at 1314.442 kb on - strand, within Atu1325at 1314.492 kb on + strand, within Atu1325at 1314.581 kb on - strand, within Atu1325at 1314.813 kb on - strand, within Atu1326at 1314.917 kb on - strand, within Atu1326at 1314.939 kb on - strand, within Atu1326at 1314.939 kb on - strand, within Atu1326at 1315.017 kb on + strand, within Atu1326at 1315.039 kb on + strand, within Atu1326at 1315.496 kb on + strand, within Atu1327at 1315.498 kb on + strand, within Atu1327at 1315.663 kb on - strandat 1316.183 kb on + strandat 1316.381 kb on + strand, within Atu1329at 1316.477 kb on + strand, within Atu1329at 1316.489 kb on + strand, within Atu1329at 1316.533 kb on + strand, within Atu1329at 1316.596 kb on - strand, within Atu1329at 1316.631 kb on - strand, within Atu1329

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Per-strain Table

Position Strand Gene LocusTag Fraction Ribitol (C)
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1,314,442 - Atu1325 0.55 +0.3
1,314,492 + Atu1325 0.65 +0.1
1,314,581 - Atu1325 0.83 +1.1
1,314,813 - Atu1326 0.32 +1.0
1,314,917 - Atu1326 0.54 +0.2
1,314,939 - Atu1326 0.58 +0.2
1,314,939 - Atu1326 0.58 -0.0
1,315,017 + Atu1326 0.75 -0.2
1,315,039 + Atu1326 0.80 +1.1
1,315,496 + Atu1327 0.63 +1.0
1,315,498 + Atu1327 0.63 +1.0
1,315,663 - +0.8
1,316,183 + +0.4
1,316,381 + Atu1329 0.25 -0.7
1,316,477 + Atu1329 0.41 -0.5
1,316,489 + Atu1329 0.43 -1.4
1,316,533 + Atu1329 0.50 -0.3
1,316,596 - Atu1329 0.60 +0.9
1,316,631 - Atu1329 0.66 -0.1

Or see this region's nucleotide sequence