Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0789 and Atu0790 are separated by 10 nucleotides Atu0790 and Atu0791 are separated by 214 nucleotides Atu0791 and Atu0792 are separated by 45 nucleotides Atu0792 and Atu8136 are separated by 183 nucleotides
Atu0789: Atu0789 - hypothetical protein, at 786,944 to 787,129
Atu0789
Atu0790: Atu0790 - hypothetical protein, at 787,140 to 787,829
Atu0790
Atu0791: Atu0791 - transcriptional regulator, GntR family, at 788,044 to 788,724
Atu0791
Atu0792: Atu0792 - hypothetical protein, at 788,770 to 789,234
Atu0792
Atu8136: Atu8136 - hypothetical protein, at 789,418 to 790,518
Atu8136
Position (kb) 788
789 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 787.254 kb on + strand, within Atu0790 at 787.254 kb on + strand, within Atu0790 at 787.254 kb on + strand, within Atu0790 at 787.262 kb on - strand, within Atu0790 at 787.367 kb on + strand, within Atu0790 at 787.372 kb on + strand, within Atu0790 at 787.445 kb on - strand, within Atu0790 at 787.504 kb on - strand, within Atu0790 at 787.504 kb on - strand, within Atu0790 at 787.591 kb on + strand, within Atu0790 at 787.832 kb on - strand at 787.898 kb on + strand at 787.919 kb on + strand at 787.935 kb on + strand at 787.943 kb on - strand at 787.952 kb on + strand at 788.010 kb on + strand at 788.018 kb on - strand at 788.018 kb on - strand at 788.076 kb on - strand at 788.078 kb on + strand at 788.108 kb on - strand at 788.170 kb on + strand, within Atu0791 at 788.292 kb on + strand, within Atu0791 at 788.325 kb on - strand, within Atu0791 at 788.355 kb on - strand, within Atu0791 at 788.434 kb on - strand, within Atu0791 at 788.457 kb on + strand, within Atu0791 at 788.465 kb on - strand, within Atu0791 at 788.555 kb on + strand, within Atu0791 at 788.575 kb on + strand, within Atu0791 at 788.581 kb on - strand, within Atu0791 at 788.727 kb on - strand at 788.732 kb on - strand at 788.770 kb on + strand at 788.790 kb on + strand at 788.790 kb on + strand at 788.790 kb on + strand at 788.790 kb on + strand at 788.798 kb on - strand at 788.896 kb on - strand, within Atu0792 at 788.898 kb on + strand, within Atu0792 at 788.901 kb on - strand, within Atu0792 at 788.929 kb on - strand, within Atu0792 at 788.933 kb on + strand, within Atu0792 at 789.051 kb on - strand, within Atu0792 at 789.103 kb on - strand, within Atu0792 at 789.328 kb on + strand at 789.328 kb on + strand at 789.328 kb on + strand at 789.409 kb on - strand at 789.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 787,254 + Atu0790 0.17 -0.3 787,254 + Atu0790 0.17 +0.6 787,254 + Atu0790 0.17 -0.4 787,262 - Atu0790 0.18 +0.4 787,367 + Atu0790 0.33 +0.1 787,372 + Atu0790 0.34 +0.4 787,445 - Atu0790 0.44 +0.7 787,504 - Atu0790 0.53 +0.3 787,504 - Atu0790 0.53 +0.3 787,591 + Atu0790 0.65 -0.1 787,832 - +0.0 787,898 + +0.1 787,919 + -0.5 787,935 + -0.3 787,943 - +1.5 787,952 + +0.2 788,010 + -0.1 788,018 - +0.7 788,018 - -0.1 788,076 - +1.3 788,078 + +0.5 788,108 - +0.6 788,170 + Atu0791 0.19 +0.3 788,292 + Atu0791 0.36 +0.5 788,325 - Atu0791 0.41 +0.5 788,355 - Atu0791 0.46 +0.3 788,434 - Atu0791 0.57 +0.4 788,457 + Atu0791 0.61 +0.9 788,465 - Atu0791 0.62 +0.4 788,555 + Atu0791 0.75 +0.5 788,575 + Atu0791 0.78 +0.2 788,581 - Atu0791 0.79 +1.0 788,727 - -1.8 788,732 - -2.0 788,770 + -3.1 788,790 + -2.4 788,790 + -1.9 788,790 + -2.3 788,790 + -3.2 788,798 - -3.4 788,896 - Atu0792 0.27 -3.2 788,898 + Atu0792 0.28 -3.1 788,901 - Atu0792 0.28 -3.6 788,929 - Atu0792 0.34 -3.8 788,933 + Atu0792 0.35 -5.2 789,051 - Atu0792 0.60 -2.4 789,103 - Atu0792 0.72 -2.4 789,328 + +0.3 789,328 + +0.2 789,328 + -0.5 789,409 - +0.4 789,452 + -0.1
Or see this region's nucleotide sequence