Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0590 and Atu0591 are separated by 277 nucleotides Atu0591 and Atu0592 are separated by 248 nucleotides
Atu0590: Atu0590 - transcriptional regulator repressor, at 573,201 to 574,226
Atu0590
Atu0591: Atu0591 - ABC transporter, substrate binding protein (alpha-glucoside), at 574,504 to 575,865
Atu0591
Atu0592: Atu0592 - ABC transporter, membrane spanning protein, at 576,114 to 577,034
Atu0592
Position (kb) 574
575
576 Strain fitness (log2 ratio) -1
0
1
2
3 at 573.583 kb on + strand, within Atu0590 at 573.650 kb on + strand, within Atu0590 at 573.677 kb on - strand, within Atu0590 at 573.686 kb on + strand, within Atu0590 at 573.691 kb on + strand, within Atu0590 at 573.764 kb on - strand, within Atu0590 at 573.806 kb on - strand, within Atu0590 at 573.813 kb on + strand, within Atu0590 at 573.957 kb on + strand, within Atu0590 at 573.965 kb on - strand, within Atu0590 at 573.982 kb on + strand, within Atu0590 at 574.017 kb on - strand, within Atu0590 at 574.048 kb on + strand, within Atu0590 at 574.154 kb on - strand at 574.154 kb on - strand at 574.154 kb on - strand at 574.262 kb on + strand at 574.485 kb on - strand at 574.537 kb on + strand at 574.626 kb on + strand at 574.722 kb on - strand, within Atu0591 at 574.811 kb on - strand, within Atu0591 at 574.811 kb on - strand, within Atu0591 at 574.908 kb on - strand, within Atu0591 at 574.935 kb on + strand, within Atu0591 at 574.938 kb on - strand, within Atu0591 at 574.970 kb on - strand, within Atu0591 at 575.030 kb on - strand, within Atu0591 at 575.056 kb on + strand, within Atu0591 at 575.056 kb on + strand, within Atu0591 at 575.065 kb on + strand, within Atu0591 at 575.073 kb on - strand, within Atu0591 at 575.083 kb on + strand, within Atu0591 at 575.148 kb on - strand, within Atu0591 at 575.222 kb on - strand, within Atu0591 at 575.368 kb on + strand, within Atu0591 at 575.536 kb on + strand, within Atu0591 at 575.628 kb on + strand, within Atu0591 at 575.636 kb on - strand, within Atu0591 at 575.644 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.652 kb on - strand, within Atu0591 at 575.654 kb on - strand, within Atu0591 at 575.654 kb on - strand, within Atu0591 at 575.862 kb on - strand at 575.968 kb on + strand at 575.980 kb on + strand at 575.988 kb on - strand at 576.005 kb on + strand at 576.005 kb on + strand at 576.013 kb on - strand at 576.020 kb on - strand at 576.057 kb on - strand at 576.138 kb on - strand at 576.163 kb on - strand at 576.215 kb on - strand, within Atu0592 at 576.257 kb on + strand, within Atu0592 at 576.415 kb on - strand, within Atu0592 at 576.542 kb on + strand, within Atu0592 at 576.557 kb on + strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.767 kb on + strand, within Atu0592 at 576.782 kb on + strand, within Atu0592 at 576.814 kb on + strand, within Atu0592
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 573,583 + Atu0590 0.37 -0.4 573,650 + Atu0590 0.44 -0.7 573,677 - Atu0590 0.46 -1.5 573,686 + Atu0590 0.47 -0.2 573,691 + Atu0590 0.48 -1.7 573,764 - Atu0590 0.55 -0.2 573,806 - Atu0590 0.59 -1.0 573,813 + Atu0590 0.60 -0.7 573,957 + Atu0590 0.74 -0.5 573,965 - Atu0590 0.74 -1.2 573,982 + Atu0590 0.76 -0.3 574,017 - Atu0590 0.80 -0.4 574,048 + Atu0590 0.83 -0.7 574,154 - -1.2 574,154 - -0.1 574,154 - +0.0 574,262 + +0.3 574,485 - +1.4 574,537 + +0.7 574,626 + +0.7 574,722 - Atu0591 0.16 +0.7 574,811 - Atu0591 0.23 +0.8 574,811 - Atu0591 0.23 +3.2 574,908 - Atu0591 0.30 +1.2 574,935 + Atu0591 0.32 +0.6 574,938 - Atu0591 0.32 +0.8 574,970 - Atu0591 0.34 +0.2 575,030 - Atu0591 0.39 +0.7 575,056 + Atu0591 0.41 +1.3 575,056 + Atu0591 0.41 +0.9 575,065 + Atu0591 0.41 +0.9 575,073 - Atu0591 0.42 +0.4 575,083 + Atu0591 0.43 +0.3 575,148 - Atu0591 0.47 -0.2 575,222 - Atu0591 0.53 +2.2 575,368 + Atu0591 0.63 +1.1 575,536 + Atu0591 0.76 +0.6 575,628 + Atu0591 0.83 +0.9 575,636 - Atu0591 0.83 +0.1 575,644 + Atu0591 0.84 +1.4 575,646 + Atu0591 0.84 +0.7 575,646 + Atu0591 0.84 +0.1 575,646 + Atu0591 0.84 +1.0 575,646 + Atu0591 0.84 +0.6 575,646 + Atu0591 0.84 +1.0 575,652 - Atu0591 0.84 +0.8 575,654 - Atu0591 0.84 +1.3 575,654 - Atu0591 0.84 +0.1 575,862 - +0.7 575,968 + -0.1 575,980 + +0.8 575,988 - +0.7 576,005 + +0.3 576,005 + -0.0 576,013 - -0.7 576,020 - +0.8 576,057 - +0.6 576,138 - +0.2 576,163 - +0.4 576,215 - Atu0592 0.11 +0.1 576,257 + Atu0592 0.16 +1.0 576,415 - Atu0592 0.33 +0.3 576,542 + Atu0592 0.46 +1.8 576,557 + Atu0592 0.48 +0.8 576,565 - Atu0592 0.49 +0.7 576,565 - Atu0592 0.49 +0.4 576,565 - Atu0592 0.49 -1.4 576,767 + Atu0592 0.71 +0.2 576,782 + Atu0592 0.73 +0.9 576,814 + Atu0592 0.76 +0.4
Or see this region's nucleotide sequence