Experiment: Ribitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0527 and Atu0528 are separated by 322 nucleotides Atu0528 and Atu0529 are separated by 154 nucleotides
Atu0527: Atu0527 - two component sensor kinase/response regulator hybrid, at 517,707 to 521,216
Atu0527
Atu0528: Atu0528 - large conductance mechanosensitive channel protein, at 521,539 to 521,967
Atu0528
Atu0529: Atu0529 - aspartate transaminase, at 522,122 to 523,288
Atu0529
Position (kb) 521
522 Strain fitness (log2 ratio) -2
-1
0
1 at 520.602 kb on - strand, within Atu0527 at 520.649 kb on - strand, within Atu0527 at 520.649 kb on - strand, within Atu0527 at 520.789 kb on + strand, within Atu0527 at 520.791 kb on + strand, within Atu0527 at 520.797 kb on - strand, within Atu0527 at 520.797 kb on - strand, within Atu0527 at 520.797 kb on - strand, within Atu0527 at 520.801 kb on + strand, within Atu0527 at 520.831 kb on + strand, within Atu0527 at 520.971 kb on + strand at 521.018 kb on - strand at 521.062 kb on + strand at 521.070 kb on - strand at 521.171 kb on - strand at 521.178 kb on + strand at 521.226 kb on - strand at 521.406 kb on + strand at 521.413 kb on - strand at 521.484 kb on + strand at 521.502 kb on + strand at 521.525 kb on - strand at 521.682 kb on - strand, within Atu0528 at 521.702 kb on + strand, within Atu0528 at 521.729 kb on + strand, within Atu0528 at 521.838 kb on + strand, within Atu0528 at 521.846 kb on - strand, within Atu0528 at 521.957 kb on + strand at 522.080 kb on - strand at 522.136 kb on - strand at 522.138 kb on + strand at 522.138 kb on + strand at 522.153 kb on + strand at 522.260 kb on - strand, within Atu0529 at 522.304 kb on + strand, within Atu0529 at 522.317 kb on - strand, within Atu0529 at 522.355 kb on + strand, within Atu0529 at 522.525 kb on + strand, within Atu0529 at 522.613 kb on + strand, within Atu0529 at 522.883 kb on - strand, within Atu0529 at 522.946 kb on + strand, within Atu0529
Per-strain Table
Position Strand Gene LocusTag Fraction Ribitol (C) remove 520,602 - Atu0527 0.82 +0.3 520,649 - Atu0527 0.84 +0.3 520,649 - Atu0527 0.84 +0.3 520,789 + Atu0527 0.88 +0.0 520,791 + Atu0527 0.88 -0.2 520,797 - Atu0527 0.88 -1.2 520,797 - Atu0527 0.88 +0.4 520,797 - Atu0527 0.88 -0.2 520,801 + Atu0527 0.88 -0.6 520,831 + Atu0527 0.89 -2.0 520,971 + -0.6 521,018 - +0.7 521,062 + -0.1 521,070 - +1.0 521,171 - -0.4 521,178 + +0.3 521,226 - -0.4 521,406 + -0.8 521,413 - -0.3 521,484 + -0.3 521,502 + -0.5 521,525 - -0.4 521,682 - Atu0528 0.33 +0.1 521,702 + Atu0528 0.38 +0.0 521,729 + Atu0528 0.44 +0.7 521,838 + Atu0528 0.70 +0.4 521,846 - Atu0528 0.72 +0.9 521,957 + -0.3 522,080 - -0.1 522,136 - +0.4 522,138 + -0.2 522,138 + -0.5 522,153 + +0.3 522,260 - Atu0529 0.12 +0.1 522,304 + Atu0529 0.16 +0.3 522,317 - Atu0529 0.17 +0.2 522,355 + Atu0529 0.20 +0.8 522,525 + Atu0529 0.35 +0.2 522,613 + Atu0529 0.42 +0.1 522,883 - Atu0529 0.65 -0.4 522,946 + Atu0529 0.71 +0.1
Or see this region's nucleotide sequence