Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10490 and RPSI07_RS10495 are separated by 19 nucleotides RPSI07_RS10495 and RPSI07_RS10500 are separated by 12 nucleotides RPSI07_RS10500 and RPSI07_RS10505 are separated by 245 nucleotides
RPSI07_RS10490: RPSI07_RS10490 - PDZ domain-containing protein, at 556,279 to 557,493
_RS10490
RPSI07_RS10495: RPSI07_RS10495 - Nif3-like dinuclear metal center hexameric protein, at 557,513 to 558,259
_RS10495
RPSI07_RS10500: RPSI07_RS10500 - large conductance mechanosensitive channel protein MscL, at 558,272 to 558,697
_RS10500
RPSI07_RS10505: RPSI07_RS10505 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 558,943 to 559,551
_RS10505
Position (kb) 557
558
559 Strain fitness (log2 ratio) -2
-1
0
1
2 at 556.727 kb on + strand, within RPSI07_RS10490 at 556.727 kb on + strand, within RPSI07_RS10490 at 556.834 kb on - strand, within RPSI07_RS10490 at 556.834 kb on - strand, within RPSI07_RS10490 at 557.115 kb on - strand, within RPSI07_RS10490 at 557.115 kb on - strand, within RPSI07_RS10490 at 557.401 kb on + strand at 557.402 kb on - strand at 557.493 kb on + strand at 557.709 kb on - strand, within RPSI07_RS10495 at 557.798 kb on + strand, within RPSI07_RS10495 at 557.975 kb on - strand, within RPSI07_RS10495 at 558.083 kb on + strand, within RPSI07_RS10495 at 558.084 kb on - strand, within RPSI07_RS10495 at 558.143 kb on + strand, within RPSI07_RS10495 at 558.241 kb on + strand at 558.242 kb on - strand at 558.242 kb on - strand at 558.242 kb on - strand at 558.268 kb on + strand at 558.398 kb on - strand, within RPSI07_RS10500 at 558.641 kb on + strand, within RPSI07_RS10500 at 558.836 kb on - strand at 558.837 kb on + strand at 558.837 kb on + strand at 558.837 kb on + strand at 558.837 kb on + strand at 558.838 kb on - strand at 558.881 kb on - strand at 558.914 kb on + strand at 558.914 kb on + strand at 558.914 kb on + strand at 558.914 kb on + strand at 558.914 kb on + strand at 558.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap remove 556,727 + RPSI07_RS10490 0.37 +1.4 556,727 + RPSI07_RS10490 0.37 -1.1 556,834 - RPSI07_RS10490 0.46 +0.1 556,834 - RPSI07_RS10490 0.46 +1.5 557,115 - RPSI07_RS10490 0.69 -0.7 557,115 - RPSI07_RS10490 0.69 +0.3 557,401 + -2.1 557,402 - +0.6 557,493 + -0.9 557,709 - RPSI07_RS10495 0.26 -1.0 557,798 + RPSI07_RS10495 0.38 +2.3 557,975 - RPSI07_RS10495 0.62 +1.3 558,083 + RPSI07_RS10495 0.76 +0.7 558,084 - RPSI07_RS10495 0.76 -0.8 558,143 + RPSI07_RS10495 0.84 +0.5 558,241 + +0.8 558,242 - -0.3 558,242 - -0.1 558,242 - +0.3 558,268 + +1.9 558,398 - RPSI07_RS10500 0.30 -1.1 558,641 + RPSI07_RS10500 0.87 -0.9 558,836 - -2.5 558,837 + +0.8 558,837 + +0.2 558,837 + -1.4 558,837 + +0.6 558,838 - -0.5 558,881 - +2.3 558,914 + +0.5 558,914 + +0.7 558,914 + -0.0 558,914 + +0.0 558,914 + +0.5 558,915 - -1.1
Or see this region's nucleotide sequence