Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4473

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4472 and Echvi_4473 are separated by 41 nucleotidesEchvi_4473 and Echvi_4474 overlap by 4 nucleotidesEchvi_4474 and Echvi_4475 are separated by 2 nucleotides Echvi_4472: Echvi_4472 - heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase, at 5,348,194 to 5,350,128 _4472 Echvi_4473: Echvi_4473 - Fe2+/Zn2+ uptake regulation proteins, at 5,350,170 to 5,350,592 _4473 Echvi_4474: Echvi_4474 - hypothetical protein, at 5,350,589 to 5,351,140 _4474 Echvi_4475: Echvi_4475 - Divergent AAA domain., at 5,351,143 to 5,351,532 _4475 Position (kb) 5350 5351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5349.209 kb on - strand, within Echvi_4472at 5349.232 kb on + strand, within Echvi_4472at 5349.275 kb on + strand, within Echvi_4472at 5349.276 kb on - strand, within Echvi_4472at 5349.279 kb on + strand, within Echvi_4472at 5349.279 kb on + strand, within Echvi_4472at 5349.280 kb on - strand, within Echvi_4472at 5349.280 kb on - strand, within Echvi_4472at 5349.340 kb on - strand, within Echvi_4472at 5349.340 kb on - strand, within Echvi_4472at 5349.341 kb on + strand, within Echvi_4472at 5349.341 kb on + strand, within Echvi_4472at 5349.342 kb on - strand, within Echvi_4472at 5349.343 kb on + strand, within Echvi_4472at 5349.343 kb on + strand, within Echvi_4472at 5349.343 kb on + strand, within Echvi_4472at 5349.343 kb on + strand, within Echvi_4472at 5349.343 kb on + strand, within Echvi_4472at 5349.344 kb on - strand, within Echvi_4472at 5349.410 kb on + strand, within Echvi_4472at 5349.463 kb on + strand, within Echvi_4472at 5349.463 kb on + strand, within Echvi_4472at 5349.463 kb on + strand, within Echvi_4472at 5349.463 kb on + strand, within Echvi_4472at 5349.467 kb on - strand, within Echvi_4472at 5349.511 kb on - strand, within Echvi_4472at 5349.512 kb on + strand, within Echvi_4472at 5349.512 kb on + strand, within Echvi_4472at 5349.512 kb on + strand, within Echvi_4472at 5349.512 kb on + strand, within Echvi_4472at 5349.513 kb on - strand, within Echvi_4472at 5349.513 kb on - strand, within Echvi_4472at 5349.513 kb on - strand, within Echvi_4472at 5349.513 kb on - strand, within Echvi_4472at 5349.513 kb on - strand, within Echvi_4472at 5349.513 kb on - strand, within Echvi_4472at 5349.514 kb on + strand, within Echvi_4472at 5349.514 kb on + strand, within Echvi_4472at 5349.514 kb on + strand, within Echvi_4472at 5349.514 kb on + strand, within Echvi_4472at 5349.514 kb on + strand, within Echvi_4472at 5349.515 kb on - strand, within Echvi_4472at 5349.515 kb on - strand, within Echvi_4472at 5349.515 kb on - strand, within Echvi_4472at 5349.515 kb on - strand, within Echvi_4472at 5349.515 kb on - strand, within Echvi_4472at 5349.515 kb on - strand, within Echvi_4472at 5349.516 kb on + strand, within Echvi_4472at 5349.516 kb on + strand, within Echvi_4472at 5349.516 kb on + strand, within Echvi_4472at 5349.517 kb on - strand, within Echvi_4472at 5349.679 kb on + strand, within Echvi_4472at 5349.679 kb on + strand, within Echvi_4472at 5349.680 kb on - strand, within Echvi_4472at 5349.693 kb on + strand, within Echvi_4472at 5349.709 kb on + strand, within Echvi_4472at 5349.709 kb on + strand, within Echvi_4472at 5349.709 kb on + strand, within Echvi_4472at 5349.718 kb on + strand, within Echvi_4472at 5349.718 kb on + strand, within Echvi_4472at 5349.719 kb on - strand, within Echvi_4472at 5349.721 kb on - strand, within Echvi_4472at 5349.773 kb on + strand, within Echvi_4472at 5349.790 kb on + strand, within Echvi_4472at 5349.826 kb on + strand, within Echvi_4472at 5349.826 kb on + strand, within Echvi_4472at 5349.831 kb on + strand, within Echvi_4472at 5349.831 kb on + strand, within Echvi_4472at 5349.923 kb on + strand, within Echvi_4472at 5349.929 kb on - strand, within Echvi_4472at 5349.929 kb on - strand, within Echvi_4472at 5349.941 kb on - strandat 5349.970 kb on + strandat 5349.974 kb on - strandat 5349.983 kb on + strandat 5350.037 kb on + strandat 5350.079 kb on - strandat 5350.079 kb on - strandat 5350.128 kb on + strandat 5350.259 kb on + strand, within Echvi_4473at 5350.259 kb on + strand, within Echvi_4473at 5350.259 kb on + strand, within Echvi_4473at 5350.260 kb on - strand, within Echvi_4473at 5350.261 kb on + strand, within Echvi_4473at 5350.261 kb on + strand, within Echvi_4473at 5350.262 kb on - strand, within Echvi_4473at 5350.267 kb on + strand, within Echvi_4473at 5350.268 kb on - strand, within Echvi_4473at 5350.337 kb on + strand, within Echvi_4473at 5350.338 kb on - strand, within Echvi_4473at 5350.360 kb on + strand, within Echvi_4473at 5350.361 kb on - strand, within Echvi_4473at 5350.361 kb on - strand, within Echvi_4473at 5350.361 kb on - strand, within Echvi_4473at 5350.364 kb on + strand, within Echvi_4473at 5350.364 kb on + strand, within Echvi_4473at 5350.365 kb on - strand, within Echvi_4473at 5350.365 kb on - strand, within Echvi_4473at 5350.365 kb on - strand, within Echvi_4473at 5350.391 kb on + strand, within Echvi_4473at 5350.391 kb on + strand, within Echvi_4473at 5350.392 kb on - strand, within Echvi_4473at 5350.432 kb on + strand, within Echvi_4473at 5350.439 kb on + strand, within Echvi_4473at 5350.439 kb on + strand, within Echvi_4473at 5350.440 kb on - strand, within Echvi_4473at 5350.440 kb on - strand, within Echvi_4473at 5350.445 kb on + strand, within Echvi_4473at 5350.470 kb on + strand, within Echvi_4473at 5350.470 kb on + strand, within Echvi_4473at 5350.470 kb on + strand, within Echvi_4473at 5350.471 kb on - strand, within Echvi_4473at 5350.471 kb on - strand, within Echvi_4473at 5350.486 kb on - strand, within Echvi_4473at 5350.492 kb on - strand, within Echvi_4473at 5350.511 kb on - strand, within Echvi_4473at 5350.515 kb on + strand, within Echvi_4473at 5350.515 kb on + strand, within Echvi_4473at 5350.592 kb on + strandat 5350.611 kb on - strandat 5350.611 kb on - strandat 5350.611 kb on - strandat 5350.613 kb on + strandat 5350.646 kb on + strand, within Echvi_4474at 5350.777 kb on + strand, within Echvi_4474at 5350.816 kb on + strand, within Echvi_4474at 5350.817 kb on - strand, within Echvi_4474at 5350.820 kb on + strand, within Echvi_4474at 5350.837 kb on + strand, within Echvi_4474at 5350.930 kb on + strand, within Echvi_4474at 5350.948 kb on + strand, within Echvi_4474at 5350.948 kb on + strand, within Echvi_4474at 5350.948 kb on + strand, within Echvi_4474at 5350.949 kb on - strand, within Echvi_4474at 5350.949 kb on - strand, within Echvi_4474at 5350.977 kb on + strand, within Echvi_4474at 5350.977 kb on + strand, within Echvi_4474at 5351.050 kb on + strand, within Echvi_4474at 5351.119 kb on + strandat 5351.119 kb on + strandat 5351.123 kb on - strandat 5351.123 kb on - strandat 5351.188 kb on + strand, within Echvi_4475at 5351.190 kb on + strand, within Echvi_4475at 5351.190 kb on + strand, within Echvi_4475at 5351.217 kb on + strand, within Echvi_4475at 5351.223 kb on + strand, within Echvi_4475at 5351.223 kb on + strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.256 kb on - strand, within Echvi_4475at 5351.277 kb on + strand, within Echvi_4475at 5351.277 kb on + strand, within Echvi_4475at 5351.315 kb on + strand, within Echvi_4475at 5351.329 kb on + strand, within Echvi_4475at 5351.342 kb on + strand, within Echvi_4475at 5351.343 kb on - strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.377 kb on + strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.378 kb on - strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.379 kb on + strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.380 kb on - strand, within Echvi_4475at 5351.382 kb on - strand, within Echvi_4475at 5351.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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5,349,209 - Echvi_4472 0.52 -0.9
5,349,232 + Echvi_4472 0.54 +3.0
5,349,275 + Echvi_4472 0.56 +0.1
5,349,276 - Echvi_4472 0.56 -2.0
5,349,279 + Echvi_4472 0.56 +0.4
5,349,279 + Echvi_4472 0.56 +0.5
5,349,280 - Echvi_4472 0.56 -1.2
5,349,280 - Echvi_4472 0.56 -0.6
5,349,340 - Echvi_4472 0.59 +0.3
5,349,340 - Echvi_4472 0.59 -1.0
5,349,341 + Echvi_4472 0.59 +0.4
5,349,341 + Echvi_4472 0.59 +0.9
5,349,342 - Echvi_4472 0.59 +1.1
5,349,343 + Echvi_4472 0.59 +1.4
5,349,343 + Echvi_4472 0.59 +0.8
5,349,343 + Echvi_4472 0.59 -0.4
5,349,343 + Echvi_4472 0.59 -1.0
5,349,343 + Echvi_4472 0.59 +1.1
5,349,344 - Echvi_4472 0.59 -0.1
5,349,410 + Echvi_4472 0.63 -1.7
5,349,463 + Echvi_4472 0.66 -0.3
5,349,463 + Echvi_4472 0.66 +1.3
5,349,463 + Echvi_4472 0.66 +0.3
5,349,463 + Echvi_4472 0.66 -0.2
5,349,467 - Echvi_4472 0.66 -1.6
5,349,511 - Echvi_4472 0.68 +0.1
5,349,512 + Echvi_4472 0.68 +1.1
5,349,512 + Echvi_4472 0.68 -0.8
5,349,512 + Echvi_4472 0.68 +2.0
5,349,512 + Echvi_4472 0.68 +0.1
5,349,513 - Echvi_4472 0.68 -1.0
5,349,513 - Echvi_4472 0.68 -0.7
5,349,513 - Echvi_4472 0.68 +0.3
5,349,513 - Echvi_4472 0.68 +0.6
5,349,513 - Echvi_4472 0.68 -0.9
5,349,513 - Echvi_4472 0.68 -1.2
5,349,514 + Echvi_4472 0.68 +0.6
5,349,514 + Echvi_4472 0.68 +0.1
5,349,514 + Echvi_4472 0.68 -0.3
5,349,514 + Echvi_4472 0.68 +0.8
5,349,514 + Echvi_4472 0.68 -0.3
5,349,515 - Echvi_4472 0.68 -0.6
5,349,515 - Echvi_4472 0.68 -0.2
5,349,515 - Echvi_4472 0.68 -0.0
5,349,515 - Echvi_4472 0.68 -0.4
5,349,515 - Echvi_4472 0.68 -0.8
5,349,515 - Echvi_4472 0.68 +1.0
5,349,516 + Echvi_4472 0.68 -0.0
5,349,516 + Echvi_4472 0.68 -1.3
5,349,516 + Echvi_4472 0.68 -0.8
5,349,517 - Echvi_4472 0.68 -1.2
5,349,679 + Echvi_4472 0.77 -0.6
5,349,679 + Echvi_4472 0.77 -0.3
5,349,680 - Echvi_4472 0.77 -0.7
5,349,693 + Echvi_4472 0.77 +1.0
5,349,709 + Echvi_4472 0.78 -0.4
5,349,709 + Echvi_4472 0.78 +0.1
5,349,709 + Echvi_4472 0.78 +0.2
5,349,718 + Echvi_4472 0.79 +0.3
5,349,718 + Echvi_4472 0.79 -0.7
5,349,719 - Echvi_4472 0.79 -0.6
5,349,721 - Echvi_4472 0.79 -0.9
5,349,773 + Echvi_4472 0.82 +2.5
5,349,790 + Echvi_4472 0.82 -0.6
5,349,826 + Echvi_4472 0.84 -0.6
5,349,826 + Echvi_4472 0.84 +0.7
5,349,831 + Echvi_4472 0.85 -0.4
5,349,831 + Echvi_4472 0.85 +0.2
5,349,923 + Echvi_4472 0.89 -1.2
5,349,929 - Echvi_4472 0.90 -0.8
5,349,929 - Echvi_4472 0.90 +1.4
5,349,941 - -1.2
5,349,970 + +0.1
5,349,974 - +0.4
5,349,983 + -0.4
5,350,037 + -0.1
5,350,079 - -1.1
5,350,079 - -1.5
5,350,128 + +0.4
5,350,259 + Echvi_4473 0.21 +1.5
5,350,259 + Echvi_4473 0.21 -0.2
5,350,259 + Echvi_4473 0.21 -0.2
5,350,260 - Echvi_4473 0.21 -1.4
5,350,261 + Echvi_4473 0.22 -0.3
5,350,261 + Echvi_4473 0.22 -0.4
5,350,262 - Echvi_4473 0.22 -2.1
5,350,267 + Echvi_4473 0.23 +1.1
5,350,268 - Echvi_4473 0.23 +0.1
5,350,337 + Echvi_4473 0.39 -0.0
5,350,338 - Echvi_4473 0.40 -2.0
5,350,360 + Echvi_4473 0.45 -0.2
5,350,361 - Echvi_4473 0.45 -2.9
5,350,361 - Echvi_4473 0.45 -1.4
5,350,361 - Echvi_4473 0.45 +0.1
5,350,364 + Echvi_4473 0.46 +0.4
5,350,364 + Echvi_4473 0.46 -0.3
5,350,365 - Echvi_4473 0.46 -1.7
5,350,365 - Echvi_4473 0.46 -1.0
5,350,365 - Echvi_4473 0.46 -2.2
5,350,391 + Echvi_4473 0.52 -0.3
5,350,391 + Echvi_4473 0.52 -0.0
5,350,392 - Echvi_4473 0.52 -1.4
5,350,432 + Echvi_4473 0.62 +0.1
5,350,439 + Echvi_4473 0.64 -0.5
5,350,439 + Echvi_4473 0.64 -0.6
5,350,440 - Echvi_4473 0.64 -1.0
5,350,440 - Echvi_4473 0.64 -0.3
5,350,445 + Echvi_4473 0.65 -0.3
5,350,470 + Echvi_4473 0.71 -0.3
5,350,470 + Echvi_4473 0.71 -0.0
5,350,470 + Echvi_4473 0.71 -1.1
5,350,471 - Echvi_4473 0.71 -0.6
5,350,471 - Echvi_4473 0.71 +1.7
5,350,486 - Echvi_4473 0.75 -2.5
5,350,492 - Echvi_4473 0.76 -1.3
5,350,511 - Echvi_4473 0.81 +0.1
5,350,515 + Echvi_4473 0.82 -0.1
5,350,515 + Echvi_4473 0.82 -0.7
5,350,592 + -0.2
5,350,611 - -0.9
5,350,611 - -2.1
5,350,611 - -2.0
5,350,613 + +0.6
5,350,646 + Echvi_4474 0.10 +0.3
5,350,777 + Echvi_4474 0.34 +0.1
5,350,816 + Echvi_4474 0.41 +0.7
5,350,817 - Echvi_4474 0.41 -2.5
5,350,820 + Echvi_4474 0.42 +0.1
5,350,837 + Echvi_4474 0.45 -0.3
5,350,930 + Echvi_4474 0.62 -0.1
5,350,948 + Echvi_4474 0.65 -0.1
5,350,948 + Echvi_4474 0.65 -0.9
5,350,948 + Echvi_4474 0.65 -1.1
5,350,949 - Echvi_4474 0.65 -2.5
5,350,949 - Echvi_4474 0.65 -1.1
5,350,977 + Echvi_4474 0.70 +1.4
5,350,977 + Echvi_4474 0.70 -0.5
5,351,050 + Echvi_4474 0.84 -0.4
5,351,119 + +0.4
5,351,119 + -0.3
5,351,123 - -2.3
5,351,123 - -0.9
5,351,188 + Echvi_4475 0.12 +1.4
5,351,190 + Echvi_4475 0.12 +0.4
5,351,190 + Echvi_4475 0.12 -0.3
5,351,217 + Echvi_4475 0.19 +0.5
5,351,223 + Echvi_4475 0.21 -0.6
5,351,223 + Echvi_4475 0.21 -0.7
5,351,256 - Echvi_4475 0.29 -1.7
5,351,256 - Echvi_4475 0.29 -2.9
5,351,256 - Echvi_4475 0.29 -0.9
5,351,277 + Echvi_4475 0.34 +1.6
5,351,277 + Echvi_4475 0.34 -0.2
5,351,315 + Echvi_4475 0.44 +1.7
5,351,329 + Echvi_4475 0.48 -0.7
5,351,342 + Echvi_4475 0.51 -0.6
5,351,343 - Echvi_4475 0.51 -1.4
5,351,377 + Echvi_4475 0.60 -0.5
5,351,377 + Echvi_4475 0.60 -0.2
5,351,377 + Echvi_4475 0.60 +0.2
5,351,378 - Echvi_4475 0.60 -1.4
5,351,378 - Echvi_4475 0.60 -2.5
5,351,378 - Echvi_4475 0.60 -2.2
5,351,379 + Echvi_4475 0.61 -0.2
5,351,379 + Echvi_4475 0.61 +0.2
5,351,379 + Echvi_4475 0.61 -0.0
5,351,379 + Echvi_4475 0.61 -0.2
5,351,379 + Echvi_4475 0.61 +0.1
5,351,379 + Echvi_4475 0.61 -0.1
5,351,380 - Echvi_4475 0.61 -2.5
5,351,380 - Echvi_4475 0.61 -2.2
5,351,380 - Echvi_4475 0.61 -0.9
5,351,382 - Echvi_4475 0.61 -0.9
5,351,497 - -1.4

Or see this region's nucleotide sequence