Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4383

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4382 and Echvi_4383 overlap by 4 nucleotidesEchvi_4383 and Echvi_4384 are separated by 230 nucleotides Echvi_4382: Echvi_4382 - Relaxase/Mobilisation nuclease domain., at 5,240,179 to 5,241,447 _4382 Echvi_4383: Echvi_4383 - hypothetical protein, at 5,241,444 to 5,241,824 _4383 Echvi_4384: Echvi_4384 - Transposase and inactivated derivatives, at 5,242,055 to 5,243,608 _4384 Position (kb) 5241 5242Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5240.495 kb on - strand, within Echvi_4382at 5240.590 kb on + strand, within Echvi_4382at 5240.590 kb on + strand, within Echvi_4382at 5240.683 kb on - strand, within Echvi_4382at 5240.765 kb on + strand, within Echvi_4382at 5240.857 kb on + strand, within Echvi_4382at 5240.871 kb on + strand, within Echvi_4382at 5240.928 kb on + strand, within Echvi_4382at 5240.928 kb on + strand, within Echvi_4382at 5240.929 kb on - strand, within Echvi_4382at 5241.090 kb on + strand, within Echvi_4382at 5241.090 kb on + strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.093 kb on + strand, within Echvi_4382at 5241.094 kb on - strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.120 kb on - strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.124 kb on - strand, within Echvi_4382at 5241.124 kb on - strand, within Echvi_4382at 5241.129 kb on + strand, within Echvi_4382at 5241.129 kb on + strand, within Echvi_4382at 5241.130 kb on - strand, within Echvi_4382at 5241.130 kb on - strand, within Echvi_4382at 5241.179 kb on + strand, within Echvi_4382at 5241.180 kb on - strand, within Echvi_4382at 5241.190 kb on + strand, within Echvi_4382at 5241.191 kb on - strand, within Echvi_4382at 5241.194 kb on + strand, within Echvi_4382at 5241.194 kb on + strand, within Echvi_4382at 5241.246 kb on + strand, within Echvi_4382at 5241.271 kb on - strand, within Echvi_4382at 5241.287 kb on + strand, within Echvi_4382at 5241.287 kb on + strand, within Echvi_4382at 5241.288 kb on - strand, within Echvi_4382at 5241.288 kb on - strand, within Echvi_4382at 5241.288 kb on - strand, within Echvi_4382at 5241.300 kb on - strand, within Echvi_4382at 5241.325 kb on - strandat 5241.399 kb on - strandat 5241.399 kb on - strandat 5241.401 kb on + strandat 5241.402 kb on - strandat 5241.415 kb on + strandat 5241.415 kb on + strandat 5241.415 kb on + strandat 5241.416 kb on - strandat 5241.416 kb on - strandat 5241.427 kb on + strandat 5241.428 kb on - strandat 5241.433 kb on + strandat 5241.434 kb on - strandat 5241.680 kb on + strand, within Echvi_4383at 5241.680 kb on + strand, within Echvi_4383at 5241.681 kb on - strand, within Echvi_4383at 5241.848 kb on - strandat 5241.848 kb on - strandat 5241.923 kb on - strandat 5241.925 kb on + strandat 5241.926 kb on - strandat 5241.984 kb on + strandat 5241.984 kb on + strandat 5241.984 kb on + strandat 5241.984 kb on + strandat 5241.985 kb on - strandat 5241.985 kb on - strandat 5241.985 kb on - strandat 5242.016 kb on + strandat 5242.040 kb on - strandat 5242.040 kb on - strandat 5242.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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5,240,495 - Echvi_4382 0.25 -0.2
5,240,590 + Echvi_4382 0.32 -0.4
5,240,590 + Echvi_4382 0.32 +0.1
5,240,683 - Echvi_4382 0.40 -0.5
5,240,765 + Echvi_4382 0.46 -0.9
5,240,857 + Echvi_4382 0.53 -1.3
5,240,871 + Echvi_4382 0.55 +2.0
5,240,928 + Echvi_4382 0.59 -0.0
5,240,928 + Echvi_4382 0.59 +0.1
5,240,929 - Echvi_4382 0.59 +0.5
5,241,090 + Echvi_4382 0.72 +0.7
5,241,090 + Echvi_4382 0.72 +0.2
5,241,091 - Echvi_4382 0.72 +1.3
5,241,091 - Echvi_4382 0.72 +0.0
5,241,091 - Echvi_4382 0.72 -0.6
5,241,093 + Echvi_4382 0.72 +0.4
5,241,094 - Echvi_4382 0.72 +0.4
5,241,106 + Echvi_4382 0.73 -0.4
5,241,106 + Echvi_4382 0.73 -1.1
5,241,106 + Echvi_4382 0.73 +0.1
5,241,106 + Echvi_4382 0.73 -0.2
5,241,106 + Echvi_4382 0.73 -1.3
5,241,106 + Echvi_4382 0.73 +2.9
5,241,106 + Echvi_4382 0.73 +0.6
5,241,107 - Echvi_4382 0.73 +0.1
5,241,107 - Echvi_4382 0.73 -0.4
5,241,107 - Echvi_4382 0.73 -0.3
5,241,107 - Echvi_4382 0.73 -1.9
5,241,107 - Echvi_4382 0.73 +1.2
5,241,107 - Echvi_4382 0.73 -0.2
5,241,107 - Echvi_4382 0.73 +0.4
5,241,107 - Echvi_4382 0.73 +0.4
5,241,107 - Echvi_4382 0.73 +0.4
5,241,120 - Echvi_4382 0.74 +0.2
5,241,123 + Echvi_4382 0.74 -1.8
5,241,123 + Echvi_4382 0.74 -0.4
5,241,123 + Echvi_4382 0.74 -0.0
5,241,123 + Echvi_4382 0.74 +0.1
5,241,124 - Echvi_4382 0.74 -1.9
5,241,124 - Echvi_4382 0.74 +0.7
5,241,129 + Echvi_4382 0.75 +0.3
5,241,129 + Echvi_4382 0.75 +0.9
5,241,130 - Echvi_4382 0.75 -0.6
5,241,130 - Echvi_4382 0.75 +0.6
5,241,179 + Echvi_4382 0.79 -0.6
5,241,180 - Echvi_4382 0.79 -0.4
5,241,190 + Echvi_4382 0.80 +1.0
5,241,191 - Echvi_4382 0.80 +0.7
5,241,194 + Echvi_4382 0.80 -0.5
5,241,194 + Echvi_4382 0.80 -0.3
5,241,246 + Echvi_4382 0.84 -0.2
5,241,271 - Echvi_4382 0.86 +0.1
5,241,287 + Echvi_4382 0.87 -0.8
5,241,287 + Echvi_4382 0.87 -0.9
5,241,288 - Echvi_4382 0.87 +0.0
5,241,288 - Echvi_4382 0.87 -0.5
5,241,288 - Echvi_4382 0.87 -0.9
5,241,300 - Echvi_4382 0.88 +0.2
5,241,325 - +0.6
5,241,399 - -0.4
5,241,399 - -0.2
5,241,401 + +0.1
5,241,402 - +0.2
5,241,415 + -0.3
5,241,415 + -0.4
5,241,415 + -0.6
5,241,416 - -0.2
5,241,416 - +0.8
5,241,427 + -0.6
5,241,428 - +0.3
5,241,433 + -0.9
5,241,434 - -1.4
5,241,680 + Echvi_4383 0.62 +0.4
5,241,680 + Echvi_4383 0.62 -1.6
5,241,681 - Echvi_4383 0.62 -0.9
5,241,848 - +0.2
5,241,848 - +1.2
5,241,923 - +0.1
5,241,925 + -1.9
5,241,926 - -0.2
5,241,984 + +0.1
5,241,984 + +1.7
5,241,984 + +0.4
5,241,984 + +0.2
5,241,985 - +1.1
5,241,985 - +0.7
5,241,985 - +1.0
5,242,016 + -0.3
5,242,040 - -0.2
5,242,040 - +1.1
5,242,040 - -0.6

Or see this region's nucleotide sequence