Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4254 and Echvi_4255 are separated by 28 nucleotides Echvi_4255 and Echvi_4256 are separated by 21 nucleotides
Echvi_4254: Echvi_4254 - Beta-xylosidase, at 5,102,057 to 5,103,193
_4254
Echvi_4255: Echvi_4255 - SusD family., at 5,103,222 to 5,104,895
_4255
Echvi_4256: Echvi_4256 - TonB-linked outer membrane protein, SusC/RagA family, at 5,104,917 to 5,107,745
_4256
Position (kb)
5103
5104
5105 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5102.226 kb on + strand, within Echvi_4254 at 5102.226 kb on + strand, within Echvi_4254 at 5102.226 kb on + strand, within Echvi_4254 at 5102.226 kb on + strand, within Echvi_4254 at 5102.226 kb on + strand, within Echvi_4254 at 5102.231 kb on - strand, within Echvi_4254 at 5102.248 kb on + strand, within Echvi_4254 at 5102.368 kb on + strand, within Echvi_4254 at 5102.369 kb on - strand, within Echvi_4254 at 5102.370 kb on + strand, within Echvi_4254 at 5102.370 kb on + strand, within Echvi_4254 at 5102.371 kb on - strand, within Echvi_4254 at 5102.371 kb on - strand, within Echvi_4254 at 5102.373 kb on + strand, within Echvi_4254 at 5102.374 kb on - strand, within Echvi_4254 at 5102.517 kb on + strand, within Echvi_4254 at 5102.517 kb on + strand, within Echvi_4254 at 5102.663 kb on - strand, within Echvi_4254 at 5102.699 kb on - strand, within Echvi_4254 at 5102.733 kb on + strand, within Echvi_4254 at 5102.733 kb on + strand, within Echvi_4254 at 5102.733 kb on + strand, within Echvi_4254 at 5102.770 kb on + strand, within Echvi_4254 at 5102.782 kb on + strand, within Echvi_4254 at 5102.844 kb on + strand, within Echvi_4254 at 5102.844 kb on + strand, within Echvi_4254 at 5102.844 kb on + strand, within Echvi_4254 at 5102.844 kb on + strand, within Echvi_4254 at 5102.844 kb on + strand, within Echvi_4254 at 5102.845 kb on - strand, within Echvi_4254 at 5102.845 kb on - strand, within Echvi_4254 at 5102.943 kb on + strand, within Echvi_4254 at 5102.944 kb on - strand, within Echvi_4254 at 5102.945 kb on + strand, within Echvi_4254 at 5102.945 kb on + strand, within Echvi_4254 at 5102.945 kb on + strand, within Echvi_4254 at 5103.010 kb on + strand, within Echvi_4254 at 5103.010 kb on + strand, within Echvi_4254 at 5103.010 kb on + strand, within Echvi_4254 at 5103.010 kb on + strand, within Echvi_4254 at 5103.010 kb on + strand, within Echvi_4254 at 5103.010 kb on + strand, within Echvi_4254 at 5103.010 kb on + strand, within Echvi_4254 at 5103.011 kb on - strand, within Echvi_4254 at 5103.011 kb on - strand, within Echvi_4254 at 5103.011 kb on - strand, within Echvi_4254 at 5103.028 kb on - strand, within Echvi_4254 at 5103.151 kb on + strand at 5103.152 kb on - strand at 5103.176 kb on + strand at 5103.177 kb on - strand at 5103.178 kb on + strand at 5103.178 kb on + strand at 5103.178 kb on + strand at 5103.178 kb on + strand at 5103.181 kb on + strand at 5103.181 kb on + strand at 5103.181 kb on + strand at 5103.182 kb on - strand at 5103.188 kb on + strand at 5103.194 kb on + strand at 5103.195 kb on - strand at 5103.195 kb on - strand at 5103.200 kb on + strand at 5103.243 kb on + strand at 5103.243 kb on + strand at 5103.265 kb on - strand at 5103.286 kb on + strand at 5103.287 kb on - strand at 5103.331 kb on + strand at 5103.610 kb on - strand, within Echvi_4255 at 5103.642 kb on + strand, within Echvi_4255 at 5103.643 kb on - strand, within Echvi_4255 at 5103.643 kb on - strand, within Echvi_4255 at 5103.718 kb on + strand, within Echvi_4255 at 5103.808 kb on + strand, within Echvi_4255 at 5103.808 kb on + strand, within Echvi_4255 at 5103.808 kb on + strand, within Echvi_4255 at 5103.808 kb on + strand, within Echvi_4255 at 5103.971 kb on + strand, within Echvi_4255 at 5103.979 kb on - strand, within Echvi_4255 at 5103.985 kb on + strand, within Echvi_4255 at 5103.985 kb on + strand, within Echvi_4255 at 5103.986 kb on - strand, within Echvi_4255 at 5103.986 kb on - strand, within Echvi_4255 at 5104.072 kb on + strand, within Echvi_4255 at 5104.072 kb on + strand, within Echvi_4255 at 5104.072 kb on + strand, within Echvi_4255 at 5104.072 kb on + strand, within Echvi_4255 at 5104.072 kb on + strand, within Echvi_4255 at 5104.073 kb on - strand, within Echvi_4255 at 5104.073 kb on - strand, within Echvi_4255 at 5104.073 kb on - strand, within Echvi_4255 at 5104.073 kb on - strand, within Echvi_4255 at 5104.073 kb on - strand, within Echvi_4255 at 5104.076 kb on + strand, within Echvi_4255 at 5104.090 kb on + strand, within Echvi_4255 at 5104.090 kb on + strand, within Echvi_4255 at 5104.114 kb on + strand, within Echvi_4255 at 5104.115 kb on - strand, within Echvi_4255 at 5104.115 kb on - strand, within Echvi_4255 at 5104.188 kb on + strand, within Echvi_4255 at 5104.189 kb on - strand, within Echvi_4255 at 5104.255 kb on + strand, within Echvi_4255 at 5104.256 kb on - strand, within Echvi_4255 at 5104.256 kb on - strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.310 kb on + strand, within Echvi_4255 at 5104.311 kb on - strand, within Echvi_4255 at 5104.311 kb on - strand, within Echvi_4255 at 5104.311 kb on - strand, within Echvi_4255 at 5104.311 kb on - strand, within Echvi_4255 at 5104.346 kb on - strand, within Echvi_4255 at 5104.399 kb on + strand, within Echvi_4255 at 5104.474 kb on - strand, within Echvi_4255 at 5104.530 kb on - strand, within Echvi_4255 at 5104.530 kb on - strand, within Echvi_4255 at 5104.585 kb on + strand, within Echvi_4255 at 5104.585 kb on + strand, within Echvi_4255 at 5104.651 kb on - strand, within Echvi_4255 at 5104.745 kb on - strand at 5104.752 kb on + strand at 5104.770 kb on - strand at 5104.775 kb on + strand at 5104.776 kb on - strand at 5104.777 kb on + strand at 5104.875 kb on + strand at 5104.887 kb on + strand at 5104.888 kb on - strand at 5104.943 kb on + strand at 5104.986 kb on + strand at 5105.019 kb on + strand at 5105.084 kb on + strand at 5105.085 kb on - strand at 5105.085 kb on - strand at 5105.086 kb on + strand at 5105.188 kb on + strand at 5105.272 kb on + strand, within Echvi_4256 at 5105.342 kb on - strand, within Echvi_4256 at 5105.366 kb on - strand, within Echvi_4256 at 5105.366 kb on - strand, within Echvi_4256 at 5105.370 kb on + strand, within Echvi_4256 at 5105.446 kb on + strand, within Echvi_4256 at 5105.447 kb on - strand, within Echvi_4256 at 5105.451 kb on + strand, within Echvi_4256 at 5105.452 kb on - strand, within Echvi_4256 at 5105.596 kb on + strand, within Echvi_4256 at 5105.596 kb on + strand, within Echvi_4256 at 5105.597 kb on - strand, within Echvi_4256 at 5105.630 kb on + strand, within Echvi_4256 at 5105.652 kb on + strand, within Echvi_4256 at 5105.652 kb on + strand, within Echvi_4256 at 5105.652 kb on + strand, within Echvi_4256 at 5105.652 kb on + strand, within Echvi_4256 at 5105.653 kb on - strand, within Echvi_4256 at 5105.668 kb on + strand, within Echvi_4256 at 5105.669 kb on - strand, within Echvi_4256 at 5105.698 kb on + strand, within Echvi_4256 at 5105.723 kb on + strand, within Echvi_4256 at 5105.726 kb on + strand, within Echvi_4256 at 5105.749 kb on + strand, within Echvi_4256 at 5105.749 kb on + strand, within Echvi_4256 at 5105.783 kb on + strand, within Echvi_4256 at 5105.805 kb on - strand, within Echvi_4256 at 5105.808 kb on - strand, within Echvi_4256 at 5105.808 kb on - strand, within Echvi_4256 at 5105.808 kb on - strand, within Echvi_4256 at 5105.885 kb on + strand, within Echvi_4256 at 5105.885 kb on + strand, within Echvi_4256 at 5105.885 kb on + strand, within Echvi_4256 at 5105.885 kb on + strand, within Echvi_4256 at 5105.886 kb on - strand, within Echvi_4256
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 5,102,226 + Echvi_4254 0.15 -0.1 5,102,226 + Echvi_4254 0.15 -0.7 5,102,226 + Echvi_4254 0.15 +0.1 5,102,226 + Echvi_4254 0.15 -0.6 5,102,226 + Echvi_4254 0.15 -0.4 5,102,231 - Echvi_4254 0.15 -1.9 5,102,248 + Echvi_4254 0.17 -1.0 5,102,368 + Echvi_4254 0.27 -0.6 5,102,369 - Echvi_4254 0.27 -0.7 5,102,370 + Echvi_4254 0.28 -0.8 5,102,370 + Echvi_4254 0.28 +0.2 5,102,371 - Echvi_4254 0.28 -2.1 5,102,371 - Echvi_4254 0.28 -0.7 5,102,373 + Echvi_4254 0.28 +0.2 5,102,374 - Echvi_4254 0.28 -0.3 5,102,517 + Echvi_4254 0.40 -1.2 5,102,517 + Echvi_4254 0.40 -0.3 5,102,663 - Echvi_4254 0.53 -0.5 5,102,699 - Echvi_4254 0.56 +0.3 5,102,733 + Echvi_4254 0.59 +0.8 5,102,733 + Echvi_4254 0.59 -1.0 5,102,733 + Echvi_4254 0.59 +0.3 5,102,770 + Echvi_4254 0.63 -0.5 5,102,782 + Echvi_4254 0.64 +0.9 5,102,844 + Echvi_4254 0.69 -1.3 5,102,844 + Echvi_4254 0.69 +0.2 5,102,844 + Echvi_4254 0.69 +0.3 5,102,844 + Echvi_4254 0.69 +0.5 5,102,844 + Echvi_4254 0.69 +0.4 5,102,845 - Echvi_4254 0.69 +1.7 5,102,845 - Echvi_4254 0.69 -0.4 5,102,943 + Echvi_4254 0.78 +1.1 5,102,944 - Echvi_4254 0.78 -1.9 5,102,945 + Echvi_4254 0.78 -0.3 5,102,945 + Echvi_4254 0.78 -0.2 5,102,945 + Echvi_4254 0.78 -0.1 5,103,010 + Echvi_4254 0.84 -1.8 5,103,010 + Echvi_4254 0.84 -0.0 5,103,010 + Echvi_4254 0.84 +0.2 5,103,010 + Echvi_4254 0.84 +0.1 5,103,010 + Echvi_4254 0.84 -0.2 5,103,010 + Echvi_4254 0.84 -0.8 5,103,010 + Echvi_4254 0.84 -1.7 5,103,011 - Echvi_4254 0.84 +0.2 5,103,011 - Echvi_4254 0.84 -0.8 5,103,011 - Echvi_4254 0.84 +0.5 5,103,028 - Echvi_4254 0.85 +0.8 5,103,151 + -0.6 5,103,152 - -0.3 5,103,176 + -0.4 5,103,177 - +2.4 5,103,178 + +0.4 5,103,178 + -1.3 5,103,178 + +0.7 5,103,178 + -2.0 5,103,181 + +1.0 5,103,181 + +0.7 5,103,181 + -1.0 5,103,182 - -3.2 5,103,188 + -1.3 5,103,194 + +0.7 5,103,195 - +0.5 5,103,195 - +0.5 5,103,200 + -0.7 5,103,243 + -0.2 5,103,243 + -0.1 5,103,265 - -0.3 5,103,286 + +1.0 5,103,287 - -0.3 5,103,331 + +0.2 5,103,610 - Echvi_4255 0.23 -0.3 5,103,642 + Echvi_4255 0.25 +0.7 5,103,643 - Echvi_4255 0.25 +0.1 5,103,643 - Echvi_4255 0.25 -0.6 5,103,718 + Echvi_4255 0.30 +0.8 5,103,808 + Echvi_4255 0.35 +0.5 5,103,808 + Echvi_4255 0.35 -0.3 5,103,808 + Echvi_4255 0.35 +0.9 5,103,808 + Echvi_4255 0.35 -0.2 5,103,971 + Echvi_4255 0.45 +0.1 5,103,979 - Echvi_4255 0.45 -1.1 5,103,985 + Echvi_4255 0.46 +0.8 5,103,985 + Echvi_4255 0.46 -0.5 5,103,986 - Echvi_4255 0.46 +0.7 5,103,986 - Echvi_4255 0.46 -0.6 5,104,072 + Echvi_4255 0.51 +0.7 5,104,072 + Echvi_4255 0.51 +0.5 5,104,072 + Echvi_4255 0.51 +0.4 5,104,072 + Echvi_4255 0.51 +0.7 5,104,072 + Echvi_4255 0.51 +1.1 5,104,073 - Echvi_4255 0.51 -0.7 5,104,073 - Echvi_4255 0.51 -0.7 5,104,073 - Echvi_4255 0.51 +0.1 5,104,073 - Echvi_4255 0.51 -0.4 5,104,073 - Echvi_4255 0.51 +1.9 5,104,076 + Echvi_4255 0.51 +0.7 5,104,090 + Echvi_4255 0.52 -0.0 5,104,090 + Echvi_4255 0.52 -0.9 5,104,114 + Echvi_4255 0.53 +0.7 5,104,115 - Echvi_4255 0.53 +0.7 5,104,115 - Echvi_4255 0.53 +1.1 5,104,188 + Echvi_4255 0.58 +0.1 5,104,189 - Echvi_4255 0.58 +0.1 5,104,255 + Echvi_4255 0.62 +0.5 5,104,256 - Echvi_4255 0.62 +0.1 5,104,256 - Echvi_4255 0.62 +0.9 5,104,310 + Echvi_4255 0.65 +0.2 5,104,310 + Echvi_4255 0.65 -1.7 5,104,310 + Echvi_4255 0.65 +0.2 5,104,310 + Echvi_4255 0.65 -0.8 5,104,310 + Echvi_4255 0.65 +0.3 5,104,310 + Echvi_4255 0.65 -0.5 5,104,310 + Echvi_4255 0.65 +0.3 5,104,310 + Echvi_4255 0.65 -1.3 5,104,311 - Echvi_4255 0.65 +0.5 5,104,311 - Echvi_4255 0.65 -0.3 5,104,311 - Echvi_4255 0.65 +1.7 5,104,311 - Echvi_4255 0.65 -0.2 5,104,346 - Echvi_4255 0.67 -0.3 5,104,399 + Echvi_4255 0.70 -1.5 5,104,474 - Echvi_4255 0.75 -1.2 5,104,530 - Echvi_4255 0.78 +1.1 5,104,530 - Echvi_4255 0.78 -0.9 5,104,585 + Echvi_4255 0.81 -1.2 5,104,585 + Echvi_4255 0.81 +1.4 5,104,651 - Echvi_4255 0.85 -0.3 5,104,745 - +0.3 5,104,752 + +0.8 5,104,770 - -0.7 5,104,775 + -0.6 5,104,776 - -0.6 5,104,777 + +0.1 5,104,875 + -0.8 5,104,887 + -2.5 5,104,888 - -2.6 5,104,943 + -0.0 5,104,986 + +0.2 5,105,019 + +1.0 5,105,084 + -0.3 5,105,085 - -0.6 5,105,085 - -1.9 5,105,086 + +0.3 5,105,188 + +0.7 5,105,272 + Echvi_4256 0.13 -0.6 5,105,342 - Echvi_4256 0.15 +0.6 5,105,366 - Echvi_4256 0.16 -1.6 5,105,366 - Echvi_4256 0.16 -0.3 5,105,370 + Echvi_4256 0.16 +0.4 5,105,446 + Echvi_4256 0.19 -1.2 5,105,447 - Echvi_4256 0.19 -0.2 5,105,451 + Echvi_4256 0.19 -0.3 5,105,452 - Echvi_4256 0.19 -0.7 5,105,596 + Echvi_4256 0.24 -0.0 5,105,596 + Echvi_4256 0.24 -1.1 5,105,597 - Echvi_4256 0.24 -0.8 5,105,630 + Echvi_4256 0.25 -0.8 5,105,652 + Echvi_4256 0.26 +0.1 5,105,652 + Echvi_4256 0.26 -0.0 5,105,652 + Echvi_4256 0.26 +0.1 5,105,652 + Echvi_4256 0.26 -0.8 5,105,653 - Echvi_4256 0.26 +0.1 5,105,668 + Echvi_4256 0.27 -0.5 5,105,669 - Echvi_4256 0.27 +0.2 5,105,698 + Echvi_4256 0.28 -0.0 5,105,723 + Echvi_4256 0.28 +0.1 5,105,726 + Echvi_4256 0.29 +1.1 5,105,749 + Echvi_4256 0.29 +0.2 5,105,749 + Echvi_4256 0.29 +2.0 5,105,783 + Echvi_4256 0.31 -0.2 5,105,805 - Echvi_4256 0.31 -0.6 5,105,808 - Echvi_4256 0.31 +0.3 5,105,808 - Echvi_4256 0.31 +0.3 5,105,808 - Echvi_4256 0.31 +0.7 5,105,885 + Echvi_4256 0.34 +0.2 5,105,885 + Echvi_4256 0.34 -0.1 5,105,885 + Echvi_4256 0.34 +0.1 5,105,885 + Echvi_4256 0.34 +0.1 5,105,886 - Echvi_4256 0.34 -1.8
Or see this region's nucleotide sequence