Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4072 and Echvi_4073 are separated by 164 nucleotides Echvi_4073 and Echvi_4074 are separated by 119 nucleotides
Echvi_4072: Echvi_4072 - hypothetical protein, at 4,881,546 to 4,882,970
_4072
Echvi_4073: Echvi_4073 - deoxyuridine 5'-triphosphate nucleotidohydrolase (dut), at 4,883,135 to 4,883,569
_4073
Echvi_4074: Echvi_4074 - Tetratricopeptide repeat., at 4,883,689 to 4,885,437
_4074
Position (kb)
4883
4884 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4882.269 kb on - strand, within Echvi_4072 at 4882.469 kb on - strand, within Echvi_4072 at 4882.609 kb on + strand, within Echvi_4072 at 4882.609 kb on + strand, within Echvi_4072 at 4882.609 kb on + strand, within Echvi_4072 at 4882.610 kb on - strand, within Echvi_4072 at 4882.610 kb on - strand, within Echvi_4072 at 4882.610 kb on - strand, within Echvi_4072 at 4882.610 kb on - strand, within Echvi_4072 at 4882.610 kb on - strand, within Echvi_4072 at 4882.611 kb on + strand, within Echvi_4072 at 4882.612 kb on - strand, within Echvi_4072 at 4882.671 kb on - strand, within Echvi_4072 at 4882.689 kb on + strand, within Echvi_4072 at 4882.689 kb on + strand, within Echvi_4072 at 4882.699 kb on + strand, within Echvi_4072 at 4882.699 kb on + strand, within Echvi_4072 at 4882.761 kb on - strand, within Echvi_4072 at 4882.761 kb on - strand, within Echvi_4072 at 4882.761 kb on - strand, within Echvi_4072 at 4882.761 kb on - strand, within Echvi_4072 at 4882.852 kb on + strand at 4882.930 kb on - strand at 4882.936 kb on - strand at 4882.959 kb on - strand at 4883.000 kb on + strand at 4883.001 kb on - strand at 4883.001 kb on - strand at 4883.003 kb on + strand at 4883.004 kb on - strand at 4883.004 kb on - strand at 4883.055 kb on + strand at 4883.055 kb on + strand at 4883.056 kb on - strand at 4883.056 kb on - strand at 4883.110 kb on - strand at 4883.111 kb on + strand at 4883.131 kb on + strand at 4883.211 kb on + strand, within Echvi_4073 at 4883.241 kb on + strand, within Echvi_4073 at 4883.336 kb on + strand, within Echvi_4073 at 4883.336 kb on + strand, within Echvi_4073 at 4883.337 kb on - strand, within Echvi_4073 at 4883.338 kb on + strand, within Echvi_4073 at 4883.653 kb on + strand at 4883.653 kb on + strand at 4883.653 kb on + strand at 4883.653 kb on + strand at 4883.653 kb on + strand at 4883.654 kb on - strand at 4883.654 kb on - strand at 4883.654 kb on - strand at 4883.658 kb on + strand at 4883.659 kb on - strand at 4883.667 kb on + strand at 4883.668 kb on - strand at 4883.685 kb on + strand at 4883.696 kb on + strand at 4883.717 kb on + strand at 4883.788 kb on - strand at 4883.872 kb on + strand, within Echvi_4074 at 4883.872 kb on + strand, within Echvi_4074 at 4883.890 kb on + strand, within Echvi_4074 at 4883.941 kb on - strand, within Echvi_4074 at 4884.031 kb on + strand, within Echvi_4074 at 4884.032 kb on - strand, within Echvi_4074 at 4884.032 kb on - strand, within Echvi_4074 at 4884.035 kb on - strand, within Echvi_4074 at 4884.058 kb on + strand, within Echvi_4074 at 4884.136 kb on + strand, within Echvi_4074 at 4884.136 kb on + strand, within Echvi_4074 at 4884.137 kb on - strand, within Echvi_4074 at 4884.137 kb on - strand, within Echvi_4074 at 4884.218 kb on - strand, within Echvi_4074 at 4884.459 kb on + strand, within Echvi_4074
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 4,882,269 - Echvi_4072 0.51 +0.0 4,882,469 - Echvi_4072 0.65 -0.1 4,882,609 + Echvi_4072 0.75 -0.8 4,882,609 + Echvi_4072 0.75 -0.4 4,882,609 + Echvi_4072 0.75 +0.6 4,882,610 - Echvi_4072 0.75 -0.2 4,882,610 - Echvi_4072 0.75 +1.9 4,882,610 - Echvi_4072 0.75 +0.8 4,882,610 - Echvi_4072 0.75 -0.0 4,882,610 - Echvi_4072 0.75 +1.2 4,882,611 + Echvi_4072 0.75 +0.1 4,882,612 - Echvi_4072 0.75 -0.9 4,882,671 - Echvi_4072 0.79 -1.0 4,882,689 + Echvi_4072 0.80 -2.0 4,882,689 + Echvi_4072 0.80 +1.0 4,882,699 + Echvi_4072 0.81 -0.1 4,882,699 + Echvi_4072 0.81 -0.1 4,882,761 - Echvi_4072 0.85 -0.4 4,882,761 - Echvi_4072 0.85 -0.5 4,882,761 - Echvi_4072 0.85 -0.3 4,882,761 - Echvi_4072 0.85 -1.6 4,882,852 + -1.2 4,882,930 - +0.3 4,882,936 - +0.4 4,882,959 - +0.6 4,883,000 + +0.2 4,883,001 - -0.5 4,883,001 - +0.6 4,883,003 + +1.8 4,883,004 - +0.7 4,883,004 - -0.2 4,883,055 + +0.0 4,883,055 + +0.2 4,883,056 - -2.3 4,883,056 - +0.9 4,883,110 - +0.9 4,883,111 + -0.0 4,883,131 + -0.3 4,883,211 + Echvi_4073 0.17 -1.2 4,883,241 + Echvi_4073 0.24 -1.3 4,883,336 + Echvi_4073 0.46 -0.8 4,883,336 + Echvi_4073 0.46 -0.7 4,883,337 - Echvi_4073 0.46 +1.6 4,883,338 + Echvi_4073 0.47 -0.3 4,883,653 + -0.3 4,883,653 + -0.2 4,883,653 + +1.9 4,883,653 + +0.3 4,883,653 + +0.7 4,883,654 - +0.8 4,883,654 - +0.6 4,883,654 - +1.8 4,883,658 + +1.8 4,883,659 - +0.7 4,883,667 + -0.6 4,883,668 - +2.1 4,883,685 + -0.9 4,883,696 + -0.5 4,883,717 + +1.0 4,883,788 - +0.3 4,883,872 + Echvi_4074 0.10 -0.1 4,883,872 + Echvi_4074 0.10 +0.8 4,883,890 + Echvi_4074 0.11 -0.1 4,883,941 - Echvi_4074 0.14 +0.5 4,884,031 + Echvi_4074 0.20 +1.5 4,884,032 - Echvi_4074 0.20 -1.0 4,884,032 - Echvi_4074 0.20 +1.6 4,884,035 - Echvi_4074 0.20 +1.6 4,884,058 + Echvi_4074 0.21 +1.0 4,884,136 + Echvi_4074 0.26 -0.5 4,884,136 + Echvi_4074 0.26 +0.4 4,884,137 - Echvi_4074 0.26 +0.5 4,884,137 - Echvi_4074 0.26 +0.5 4,884,218 - Echvi_4074 0.30 +0.6 4,884,459 + Echvi_4074 0.44 +1.1
Or see this region's nucleotide sequence